Wall clock time and date at job start Tue Mar 31 2020 05:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47501 * 2 1 4 4 C 1.50692 * 109.47013 * 120.00914 * 2 1 3 5 5 O 1.21284 * 120.00560 * 105.27763 * 4 2 1 6 6 N 1.34783 * 119.99785 * 285.26875 * 4 2 1 7 7 C 1.46494 * 120.00231 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.47132 * 60.00346 * 7 6 4 9 9 C 1.52994 * 109.47516 * 180.02562 * 7 6 4 10 10 C 1.53005 * 109.47561 * 300.00632 * 7 6 4 11 11 N 1.46906 * 109.46829 * 240.00368 * 2 1 3 12 12 C 1.46850 * 110.99822 * 76.43970 * 11 2 1 13 13 C 1.53037 * 109.52250 * 174.15910 * 12 11 2 14 14 C 1.53121 * 109.27782 * 59.18355 * 13 12 11 15 15 C 1.53127 * 109.15814 * 302.34325 * 14 13 12 16 16 H 1.09001 * 109.53607 * 297.69672 * 15 14 13 17 17 C 1.50703 * 109.50114 * 177.59528 * 15 14 13 18 18 H 1.08005 * 119.99698 * 240.19870 * 17 15 14 19 19 C 1.37871 * 120.00162 * 60.19836 * 17 15 14 20 20 N 1.31519 * 119.99713 * 359.97438 * 19 17 15 21 21 Si 1.86791 * 120.00360 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47143 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47390 * 119.99901 * 21 19 17 24 24 H 1.48498 * 109.47594 * 240.00037 * 21 19 17 25 25 C 1.46849 * 111.00039 * 312.23350 * 11 2 1 26 26 H 1.09006 * 109.46413 * 299.99757 * 1 2 3 27 27 H 1.08994 * 109.47331 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46767 * 59.99276 * 1 2 3 29 29 H 0.97000 * 119.99567 * 0.02562 * 6 4 2 30 30 H 1.09001 * 109.47110 * 59.99514 * 8 7 6 31 31 H 1.08997 * 109.47884 * 180.02562 * 8 7 6 32 32 H 1.09005 * 109.47445 * 300.00204 * 8 7 6 33 33 H 1.09003 * 109.46980 * 60.00703 * 9 7 6 34 34 H 1.09002 * 109.47308 * 179.97438 * 9 7 6 35 35 H 1.08995 * 109.47362 * 300.00288 * 9 7 6 36 36 H 1.09006 * 109.47030 * 59.99422 * 10 7 6 37 37 H 1.08995 * 109.47557 * 179.97438 * 10 7 6 38 38 H 1.08998 * 109.46916 * 300.00119 * 10 7 6 39 39 H 1.08998 * 109.46727 * 294.17858 * 12 11 2 40 40 H 1.09002 * 109.46023 * 54.14815 * 12 11 2 41 41 H 1.08999 * 109.50166 * 299.24109 * 13 12 11 42 42 H 1.08999 * 109.53447 * 179.14052 * 13 12 11 43 43 H 1.08997 * 109.52279 * 182.44182 * 14 13 12 44 44 H 1.08997 * 109.52603 * 62.24572 * 14 13 12 45 45 H 0.96999 * 119.99576 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.45993 * 305.85386 * 25 11 2 47 47 H 1.08998 * 109.46088 * 65.83223 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 8 2.4954 -1.8278 1.1389 6 7 1.9671 -0.1045 2.4324 7 6 2.4559 -0.7949 3.6284 8 6 3.9413 -1.1198 3.4584 9 6 2.2670 0.1060 4.8504 10 6 1.6695 -2.0925 3.8255 11 7 2.0197 -0.6925 -1.1995 12 6 1.8920 0.1602 -2.3883 13 6 2.5422 -0.5335 -3.5875 14 6 1.8543 -1.8805 -3.8264 15 6 1.9596 -2.7306 -2.5571 16 1 3.0086 -2.9286 -2.3369 17 6 1.2338 -4.0351 -2.7636 18 1 0.4036 -4.2982 -2.1248 19 6 1.6296 -4.8927 -3.7680 20 7 2.6403 -4.5721 -4.5461 21 14 0.7306 -6.5099 -4.0236 22 1 -0.3613 -6.6326 -3.0246 23 1 0.1550 -6.5455 -5.3921 24 1 1.6828 -7.6373 -3.8577 25 6 1.3263 -1.9732 -1.3878 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5140 -0.8900 29 1 1.5965 0.7890 2.5055 30 1 4.5017 -0.1955 3.3180 31 1 4.3050 -1.6339 4.3481 32 1 4.0756 -1.7618 2.5878 33 1 1.2087 0.3370 4.9714 34 1 2.6303 -0.4080 5.7404 35 1 2.8270 1.0305 4.7103 36 1 1.8037 -2.7345 2.9549 37 1 2.0334 -2.6064 4.7151 38 1 0.6112 -1.8611 3.9465 39 1 0.8368 0.3352 -2.5982 40 1 2.3889 1.1132 -2.2068 41 1 3.6005 -0.6964 -3.3838 42 1 2.4341 0.0924 -4.4733 43 1 2.3426 -2.3975 -4.6524 44 1 0.8044 -1.7156 -4.0682 45 1 2.9190 -5.1756 -5.2524 46 1 1.4123 -2.5696 -0.4795 47 1 0.2738 -1.7882 -1.6025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397669342.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:26 Heat of formation + Delta-G solvation = -44.195903 kcal Electronic energy + Delta-G solvation = -24026.504338 eV Core-core repulsion = 20822.753745 eV Total energy + Delta-G solvation = -3203.750593 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.20588 -38.22526 -36.16848 -34.14873 -32.44081 -31.56848 -29.74219 -28.75303 -27.47731 -27.20484 -24.92069 -24.81854 -22.40983 -21.33807 -20.18431 -19.39848 -18.28191 -16.82937 -16.34767 -15.81335 -14.98110 -14.89711 -14.36891 -14.17075 -14.09852 -13.89017 -13.50434 -13.35770 -12.84182 -12.60290 -12.51126 -12.27403 -12.15451 -12.08497 -12.01370 -11.66524 -11.57062 -11.44533 -11.26118 -11.05471 -10.98725 -10.87070 -10.55711 -10.50469 -9.99544 -9.74266 -9.38979 -9.25941 -8.92096 -8.76484 -8.48373 -8.19309 -7.53295 -5.86460 -3.91098 2.99992 3.21762 3.36843 3.44471 3.48801 4.47063 4.61170 4.68481 4.84780 4.98238 5.04121 5.22588 5.26801 5.40814 5.43722 5.53986 5.64956 5.69944 5.72633 5.74063 5.77125 5.80992 5.91166 5.95295 5.97877 6.08474 6.23514 6.32346 6.39909 6.43697 6.53602 6.68581 6.76889 6.79267 6.85869 7.19191 7.32708 7.46998 7.68285 7.75945 7.87355 7.93922 8.25479 8.30564 8.61401 8.62219 9.13238 9.72163 11.19920 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019174 B = 0.004806 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.926235 B = 5825.120110 C = 6637.498281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.064 3.936 3 H 0.091 0.909 4 C 0.521 3.479 5 O -0.501 6.501 6 N -0.733 5.733 7 C 0.171 3.829 8 C -0.164 4.164 9 C -0.153 4.153 10 C -0.165 4.165 11 N -0.516 5.516 12 C 0.063 3.937 13 C -0.116 4.116 14 C -0.111 4.111 15 C 0.056 3.944 16 H 0.034 0.966 17 C -0.507 4.507 18 H 0.052 0.948 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.888 3.112 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.285 1.285 25 C 0.064 3.936 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.394 0.606 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.025 0.975 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.046 0.954 43 H 0.090 0.910 44 H 0.028 0.972 45 H 0.257 0.743 46 H 0.080 0.920 47 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.175 13.440 14.760 20.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.049 4.049 3 H 0.109 0.891 4 C 0.307 3.693 5 O -0.373 6.373 6 N -0.388 5.388 7 C 0.085 3.915 8 C -0.222 4.222 9 C -0.211 4.211 10 C -0.223 4.223 11 N -0.240 5.240 12 C -0.065 4.065 13 C -0.154 4.154 14 C -0.149 4.149 15 C 0.038 3.962 16 H 0.052 0.948 17 C -0.546 4.546 18 H 0.070 0.930 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.716 3.284 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.211 1.211 25 C -0.063 4.063 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.227 0.773 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.043 0.957 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.047 0.953 45 H 0.067 0.933 46 H 0.098 0.902 47 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -1.219 12.415 14.598 19.202 hybrid contribution -1.550 -0.143 -0.242 1.575 sum -2.769 12.272 14.356 19.088 Atomic orbital electron populations 1.22367 0.95751 1.03574 1.02098 1.21584 0.93926 0.98047 0.91356 0.89086 1.20579 0.78195 0.86729 0.83819 1.90669 1.42691 1.18691 1.85287 1.46199 1.65754 1.19948 1.06906 1.20247 0.94408 0.92565 0.84249 1.22228 0.94195 1.02240 1.03559 1.22076 1.02088 0.99667 0.97258 1.22235 0.99217 0.97494 1.03321 1.61959 1.57071 1.04635 1.00369 1.22068 0.98112 0.95110 0.91165 1.21664 1.00661 0.98460 0.94635 1.21668 0.97628 0.92645 1.02974 1.18637 0.96955 0.91989 0.88655 0.94782 1.21186 1.15661 1.02727 1.15017 0.92967 1.24920 0.95071 0.97869 0.96052 1.69911 1.26815 1.36459 1.19729 0.86602 0.79779 0.84222 0.77759 1.19921 1.21212 1.21093 1.22494 0.93892 0.87902 1.01967 0.92477 0.91062 0.91617 0.77306 0.92961 0.92299 0.89845 0.92174 0.91101 0.92135 0.89924 0.92243 0.93001 0.95714 0.92602 0.92079 0.93546 0.89199 0.95302 0.93277 0.90212 0.96551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 8.30 37.16 0.31 -2.05 16 2 C 0.06 0.95 2.70 -68.86 -0.19 0.76 16 3 H 0.09 1.12 7.86 -51.93 -0.41 0.71 16 4 C 0.52 8.08 6.39 -10.99 -0.07 8.01 16 5 O -0.50 -9.98 10.52 5.55 0.06 -9.92 16 6 N -0.73 -8.33 5.11 -47.61 -0.24 -8.57 16 7 C 0.17 1.85 1.06 -131.82 -0.14 1.71 16 8 C -0.16 -1.98 8.40 37.16 0.31 -1.67 16 9 C -0.15 -1.15 8.59 37.15 0.32 -0.83 16 10 C -0.16 -1.99 8.40 37.16 0.31 -1.67 16 11 N -0.52 -9.88 4.35 -228.07 -0.99 -10.87 16 12 C 0.06 1.11 5.22 -3.83 -0.02 1.09 16 13 C -0.12 -2.33 6.09 -26.65 -0.16 -2.49 16 14 C -0.11 -2.72 5.03 -26.60 -0.13 -2.85 16 15 C 0.06 1.49 2.26 -91.69 -0.21 1.29 16 16 H 0.03 1.02 8.14 -51.93 -0.42 0.60 16 17 C -0.51 -14.57 8.56 -34.44 -0.29 -14.87 16 18 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 20 N -0.89 -26.29 11.36 55.43 0.63 -25.66 16 21 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 25 C 0.06 1.44 3.39 -3.83 -0.01 1.43 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.11 6.44 -51.93 -0.33 0.77 16 28 H 0.06 0.85 7.09 -51.93 -0.37 0.48 16 29 H 0.39 3.28 8.47 -40.82 -0.35 2.93 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.32 6.17 -51.93 -0.32 0.99 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 1.30 6.17 -51.93 -0.32 0.98 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.02 0.42 7.13 -51.93 -0.37 0.05 16 40 H 0.06 0.84 7.95 -51.93 -0.41 0.43 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.09 2.45 6.16 -51.93 -0.32 2.13 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.08 1.94 5.90 -51.93 -0.31 1.64 16 47 H 0.02 0.36 6.59 -51.93 -0.34 0.02 16 LS Contribution 351.57 15.07 5.30 5.30 Total: -1.00 -31.79 351.57 -8.80 -40.60 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -8.46 Total: 2.56 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -0.07 Total: -10.47 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: -0.61 Total: -45.10 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.06 Total: -9.92 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.79 -8.80 -40.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397669342.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.599 kcal (2) G-P(sol) polarization free energy of solvation -31.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds