Wall clock time and date at job start Tue Mar 31 2020 05:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47501 * 2 1 4 4 C 1.50692 * 109.47013 * 120.00914 * 2 1 3 5 5 O 1.21284 * 120.00560 * 105.27763 * 4 2 1 6 6 N 1.34783 * 119.99785 * 285.26875 * 4 2 1 7 7 C 1.46494 * 120.00231 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.47132 * 60.00346 * 7 6 4 9 9 C 1.52994 * 109.47516 * 180.02562 * 7 6 4 10 10 C 1.53005 * 109.47561 * 300.00632 * 7 6 4 11 11 N 1.46906 * 109.46829 * 240.00368 * 2 1 3 12 12 C 1.46850 * 110.99822 * 76.43970 * 11 2 1 13 13 C 1.53037 * 109.52250 * 174.15910 * 12 11 2 14 14 C 1.53121 * 109.27782 * 59.18355 * 13 12 11 15 15 C 1.53127 * 109.15814 * 302.34325 * 14 13 12 16 16 H 1.09001 * 109.53607 * 297.69672 * 15 14 13 17 17 C 1.50703 * 109.50114 * 177.59528 * 15 14 13 18 18 H 1.08005 * 119.99698 * 240.19870 * 17 15 14 19 19 C 1.37871 * 120.00162 * 60.19836 * 17 15 14 20 20 N 1.31519 * 119.99713 * 359.97438 * 19 17 15 21 21 Si 1.86791 * 120.00360 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47143 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47390 * 119.99901 * 21 19 17 24 24 H 1.48498 * 109.47594 * 240.00037 * 21 19 17 25 25 C 1.46849 * 111.00039 * 312.23350 * 11 2 1 26 26 H 1.09006 * 109.46413 * 299.99757 * 1 2 3 27 27 H 1.08994 * 109.47331 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46767 * 59.99276 * 1 2 3 29 29 H 0.97000 * 119.99567 * 0.02562 * 6 4 2 30 30 H 1.09001 * 109.47110 * 59.99514 * 8 7 6 31 31 H 1.08997 * 109.47884 * 180.02562 * 8 7 6 32 32 H 1.09005 * 109.47445 * 300.00204 * 8 7 6 33 33 H 1.09003 * 109.46980 * 60.00703 * 9 7 6 34 34 H 1.09002 * 109.47308 * 179.97438 * 9 7 6 35 35 H 1.08995 * 109.47362 * 300.00288 * 9 7 6 36 36 H 1.09006 * 109.47030 * 59.99422 * 10 7 6 37 37 H 1.08995 * 109.47557 * 179.97438 * 10 7 6 38 38 H 1.08998 * 109.46916 * 300.00119 * 10 7 6 39 39 H 1.08998 * 109.46727 * 294.17858 * 12 11 2 40 40 H 1.09002 * 109.46023 * 54.14815 * 12 11 2 41 41 H 1.08999 * 109.50166 * 299.24109 * 13 12 11 42 42 H 1.08999 * 109.53447 * 179.14052 * 13 12 11 43 43 H 1.08997 * 109.52279 * 182.44182 * 14 13 12 44 44 H 1.08997 * 109.52603 * 62.24572 * 14 13 12 45 45 H 0.96999 * 119.99576 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.45993 * 305.85386 * 25 11 2 47 47 H 1.08998 * 109.46088 * 65.83223 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 8 2.4954 -1.8278 1.1389 6 7 1.9671 -0.1045 2.4324 7 6 2.4559 -0.7949 3.6284 8 6 3.9413 -1.1198 3.4584 9 6 2.2670 0.1060 4.8504 10 6 1.6695 -2.0925 3.8255 11 7 2.0197 -0.6925 -1.1995 12 6 1.8920 0.1602 -2.3883 13 6 2.5422 -0.5335 -3.5875 14 6 1.8543 -1.8805 -3.8264 15 6 1.9596 -2.7306 -2.5571 16 1 3.0086 -2.9286 -2.3369 17 6 1.2338 -4.0351 -2.7636 18 1 0.4036 -4.2982 -2.1248 19 6 1.6296 -4.8927 -3.7680 20 7 2.6403 -4.5721 -4.5461 21 14 0.7306 -6.5099 -4.0236 22 1 -0.3613 -6.6326 -3.0246 23 1 0.1550 -6.5455 -5.3921 24 1 1.6828 -7.6373 -3.8577 25 6 1.3263 -1.9732 -1.3878 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5140 -0.8900 29 1 1.5965 0.7890 2.5055 30 1 4.5017 -0.1955 3.3180 31 1 4.3050 -1.6339 4.3481 32 1 4.0756 -1.7618 2.5878 33 1 1.2087 0.3370 4.9714 34 1 2.6303 -0.4080 5.7404 35 1 2.8270 1.0305 4.7103 36 1 1.8037 -2.7345 2.9549 37 1 2.0334 -2.6064 4.7151 38 1 0.6112 -1.8611 3.9465 39 1 0.8368 0.3352 -2.5982 40 1 2.3889 1.1132 -2.2068 41 1 3.6005 -0.6964 -3.3838 42 1 2.4341 0.0924 -4.4733 43 1 2.3426 -2.3975 -4.6524 44 1 0.8044 -1.7156 -4.0682 45 1 2.9190 -5.1756 -5.2524 46 1 1.4123 -2.5696 -0.4795 47 1 0.2738 -1.7882 -1.6025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397669342.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:26 Heat of formation + Delta-G solvation = -66.473335 kcal Electronic energy + Delta-G solvation = -24027.470360 eV Core-core repulsion = 20822.753745 eV Total energy + Delta-G solvation = -3204.716615 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.41383 -39.65716 -37.34516 -35.87776 -34.17177 -32.81975 -31.65012 -30.11146 -28.19805 -28.17963 -26.95749 -26.14827 -23.91996 -23.11974 -21.42723 -20.45453 -20.02064 -18.50897 -17.86462 -17.13190 -16.61816 -16.09446 -15.99687 -15.49857 -15.43479 -15.03952 -14.81084 -14.64069 -14.49619 -14.29270 -13.86940 -13.44116 -13.41111 -13.09980 -13.05116 -12.96841 -12.85026 -12.82603 -12.71632 -12.50798 -12.49427 -12.24847 -12.03056 -11.87736 -11.77583 -11.61518 -11.36007 -10.93705 -10.73126 -10.37560 -10.16163 -9.94640 -9.00891 -8.08163 -6.22068 1.37145 1.38422 1.50570 1.82702 2.20357 2.42112 3.18053 3.20213 3.76556 3.99970 4.02448 4.07880 4.14876 4.19819 4.30493 4.34502 4.45230 4.64332 4.68422 4.71660 4.73273 4.73834 4.83729 4.87712 4.88211 4.92826 4.99501 5.03900 5.04579 5.12926 5.21920 5.25301 5.29689 5.41446 5.42457 5.43713 5.53796 5.62995 5.76671 5.97748 6.19798 6.23238 6.34389 6.49152 6.81320 6.90840 7.45044 7.52917 8.96974 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019174 B = 0.004806 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.926235 B = 5825.120110 C = 6637.498281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.062 3.938 3 H 0.131 0.869 4 C 0.515 3.485 5 O -0.555 6.555 6 N -0.714 5.714 7 C 0.167 3.833 8 C -0.162 4.162 9 C -0.144 4.144 10 C -0.162 4.162 11 N -0.537 5.537 12 C 0.067 3.933 13 C -0.111 4.111 14 C -0.102 4.102 15 C 0.055 3.945 16 H -0.018 1.018 17 C -0.534 4.534 18 H 0.044 0.956 19 C 0.013 3.987 20 N -0.916 5.916 21 Si 0.955 3.045 22 H -0.270 1.270 23 H -0.274 1.274 24 H -0.281 1.281 25 C 0.089 3.911 26 H 0.094 0.906 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.413 0.587 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.037 0.963 40 H 0.096 0.904 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.026 0.974 45 H 0.260 0.740 46 H 0.053 0.947 47 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.480 16.230 16.331 23.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.050 4.050 3 H 0.149 0.851 4 C 0.301 3.699 5 O -0.432 6.432 6 N -0.368 5.368 7 C 0.082 3.918 8 C -0.220 4.220 9 C -0.201 4.201 10 C -0.220 4.220 11 N -0.261 5.261 12 C -0.060 4.060 13 C -0.149 4.149 14 C -0.141 4.141 15 C 0.036 3.964 16 H 0.000 1.000 17 C -0.573 4.573 18 H 0.063 0.937 19 C -0.186 4.186 20 N -0.556 5.556 21 Si 0.780 3.220 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.207 1.207 25 C -0.038 4.038 26 H 0.113 0.887 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.250 0.750 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.114 0.886 41 H 0.062 0.938 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -2.542 15.266 16.200 22.404 hybrid contribution -1.084 -1.016 -0.678 1.633 sum -3.626 14.250 15.522 21.381 Atomic orbital electron populations 1.22294 0.94119 1.02171 1.04384 1.21767 0.95198 0.99056 0.88954 0.85141 1.20861 0.77641 0.86148 0.85210 1.90681 1.45230 1.21102 1.86159 1.46033 1.64442 1.20496 1.05866 1.20387 0.93134 0.92897 0.85425 1.22182 0.95633 1.01885 1.02264 1.22012 1.03402 0.99345 0.95343 1.22193 1.00152 0.97750 1.01939 1.61758 1.57538 1.04106 1.02712 1.22096 0.99021 0.95719 0.89202 1.21590 0.99246 0.96562 0.97518 1.21444 0.97458 0.94703 1.00468 1.18550 0.93805 0.92609 0.91459 0.99978 1.21528 1.15946 1.04480 1.15298 0.93749 1.25732 0.95838 1.01355 0.95636 1.70059 1.27870 1.37626 1.20005 0.85561 0.78633 0.79698 0.78094 1.19413 1.19972 1.20660 1.21949 0.93625 0.89480 0.98776 0.88750 0.94271 0.90728 0.74998 0.92038 0.90753 0.94315 0.90764 0.89998 0.90687 0.94378 0.90718 0.92131 0.94449 0.88562 0.93787 0.90616 0.92659 0.95556 0.93092 0.92870 0.96459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.30 71.98 0.60 -3.47 16 2 C 0.06 1.71 2.70 44.17 0.12 1.83 16 3 H 0.13 2.60 7.86 -2.39 -0.02 2.58 16 4 C 0.52 15.76 6.39 87.65 0.56 16.32 16 5 O -0.55 -23.40 10.52 -3.04 -0.03 -23.43 16 6 N -0.71 -14.69 5.11 -422.93 -2.16 -16.84 16 7 C 0.17 3.34 1.06 3.60 0.00 3.35 16 8 C -0.16 -3.83 8.40 71.98 0.60 -3.23 16 9 C -0.14 -1.61 8.59 71.98 0.62 -0.99 16 10 C -0.16 -3.87 8.40 71.98 0.60 -3.26 16 11 N -0.54 -20.35 4.35 -875.48 -3.81 -24.16 16 12 C 0.07 2.19 5.22 86.33 0.45 2.64 16 13 C -0.11 -4.42 6.09 30.65 0.19 -4.23 16 14 C -0.10 -5.19 5.03 30.68 0.15 -5.04 16 15 C 0.05 3.06 2.26 -11.48 -0.03 3.04 16 16 H -0.02 -1.18 8.14 -2.39 -0.02 -1.19 16 17 C -0.53 -32.28 8.56 25.60 0.22 -32.06 16 18 H 0.04 2.67 7.74 -2.91 -0.02 2.65 16 19 C 0.01 0.76 5.30 84.65 0.45 1.21 16 20 N -0.92 -56.37 11.36 21.45 0.24 -56.12 16 21 Si 0.95 46.49 29.54 68.60 2.03 48.52 16 22 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 23 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 25 C 0.09 4.20 3.39 86.33 0.29 4.49 16 26 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.04 1.19 6.44 -2.39 -0.02 1.17 16 28 H 0.07 1.66 7.09 -2.39 -0.02 1.64 16 29 H 0.41 5.22 8.47 -92.71 -0.79 4.43 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.04 1.28 6.17 -2.38 -0.01 1.27 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.04 1.26 6.17 -2.38 -0.01 1.25 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.04 1.15 7.13 -2.39 -0.02 1.14 16 40 H 0.10 2.45 7.95 -2.39 -0.02 2.43 16 41 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.05 3.16 6.16 -2.39 -0.01 3.14 16 44 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 46 H 0.05 2.78 5.90 -2.38 -0.01 2.76 16 47 H 0.02 0.80 6.59 -2.39 -0.02 0.78 16 Total: -1.00 -76.53 351.57 1.25 -75.28 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.15 Total: 16.18 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: 4.83 Total: -19.40 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -5.72 Total: -97.13 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.03 Total: -23.43 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -76.53 1.25 -75.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397669342.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.802 kcal (2) G-P(sol) polarization free energy of solvation -76.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds