Wall clock time and date at job start Tue Mar 31 2020 05:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46872 * 2 1 4 4 C 1.50698 * 109.46825 * 120.00069 * 2 1 3 5 5 O 1.21277 * 119.99509 * 120.00084 * 4 2 1 6 6 N 1.34776 * 120.00102 * 299.99758 * 4 2 1 7 7 C 1.46501 * 119.99567 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47087 * 60.00411 * 7 6 4 9 9 C 1.53004 * 109.46943 * 180.02562 * 7 6 4 10 10 C 1.53000 * 109.47483 * 300.00332 * 7 6 4 11 11 N 1.46901 * 109.47095 * 240.00462 * 2 1 3 12 12 C 1.46851 * 110.99542 * 305.78884 * 11 2 1 13 13 C 1.53044 * 109.51994 * 185.84303 * 12 11 2 14 14 C 1.53123 * 109.27512 * 300.81709 * 13 12 11 15 15 C 1.53118 * 109.15778 * 57.65945 * 14 13 12 16 16 H 1.09001 * 109.54037 * 62.30404 * 15 14 13 17 17 C 1.50706 * 109.50268 * 182.40341 * 15 14 13 18 18 H 1.07995 * 120.00167 * 119.52258 * 17 15 14 19 19 C 1.37879 * 119.99394 * 299.79957 * 17 15 14 20 20 N 1.31514 * 119.99350 * 179.97438 * 19 17 15 21 21 Si 1.86798 * 120.00608 * 0.02562 * 19 17 15 22 22 H 1.48500 * 109.47353 * 89.99430 * 21 19 17 23 23 H 1.48494 * 109.47031 * 209.99977 * 21 19 17 24 24 H 1.48504 * 109.46680 * 329.99678 * 21 19 17 25 25 C 1.46842 * 111.00029 * 69.99790 * 11 2 1 26 26 H 1.09000 * 109.47057 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47687 * 299.99846 * 1 2 3 28 28 H 1.09007 * 109.47367 * 60.00202 * 1 2 3 29 29 H 0.96997 * 120.00110 * 0.02562 * 6 4 2 30 30 H 1.09000 * 109.47057 * 59.99900 * 8 7 6 31 31 H 1.08996 * 109.47010 * 179.97438 * 8 7 6 32 32 H 1.08990 * 109.47083 * 299.99539 * 8 7 6 33 33 H 1.09002 * 109.47206 * 59.99821 * 9 7 6 34 34 H 1.08996 * 109.47374 * 180.02562 * 9 7 6 35 35 H 1.09004 * 109.47008 * 300.00560 * 9 7 6 36 36 H 1.09003 * 109.47044 * 59.99898 * 10 7 6 37 37 H 1.08996 * 109.47129 * 180.02562 * 10 7 6 38 38 H 1.09002 * 109.46685 * 300.00191 * 10 7 6 39 39 H 1.09001 * 109.46322 * 305.85548 * 12 11 2 40 40 H 1.08999 * 109.46740 * 65.82656 * 12 11 2 41 41 H 1.09001 * 109.50153 * 60.76039 * 13 12 11 42 42 H 1.09000 * 109.50059 * 180.87918 * 13 12 11 43 43 H 1.08990 * 109.52665 * 297.75102 * 14 13 12 44 44 H 1.08997 * 109.51718 * 177.55885 * 14 13 12 45 45 H 0.97005 * 119.99656 * 180.02562 * 20 19 17 46 46 H 1.08993 * 109.46277 * 54.14433 * 25 11 2 47 47 H 1.09000 * 109.46334 * 294.17171 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4546 7 6 2.1945 -0.9410 3.6507 8 6 3.7246 -0.9416 3.6509 9 6 1.6842 -0.2201 4.9000 10 6 1.6840 -2.3833 3.6504 11 7 2.0197 -0.6924 -1.1995 12 6 1.4391 -2.0372 -1.3046 13 6 2.0793 -2.7802 -2.4795 14 6 1.8310 -1.9944 -3.7701 15 6 2.4025 -0.5822 -3.6164 16 1 3.4805 -0.6395 -3.4656 17 6 2.1103 0.2169 -4.8603 18 1 1.5166 1.1167 -4.7971 19 6 2.5963 -0.2041 -6.0800 20 7 2.3409 0.4930 -7.1656 21 14 3.6162 -1.7651 -6.1908 22 1 2.7206 -2.9259 -6.4268 23 1 4.5807 -1.6476 -7.3138 24 1 4.3583 -1.9628 -4.9197 25 6 1.7530 0.0971 -2.4086 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.1488 0.5385 2.5436 30 1 4.0883 0.0859 3.6511 31 1 4.0875 -1.4554 4.5410 32 1 4.0878 -1.4555 2.7610 33 1 0.5941 -0.2199 4.8996 34 1 2.0475 -0.7339 5.7899 35 1 2.0475 0.8076 4.9003 36 1 2.0472 -2.8972 2.7603 37 1 2.0466 -2.8973 4.5405 38 1 0.5940 -2.3828 3.6502 39 1 1.6264 -2.5867 -0.3820 40 1 0.3644 -1.9572 -1.4677 41 1 3.1522 -2.8727 -2.3104 42 1 1.6371 -3.7726 -2.5669 43 1 0.7595 -1.9351 -3.9600 44 1 2.3223 -2.4975 -4.6029 45 1 2.6825 0.1966 -8.0238 46 1 2.1680 1.0976 -2.2879 47 1 0.6768 0.1671 -2.5666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397669344.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:29 Heat of formation + Delta-G solvation = -37.610668 kcal Electronic energy + Delta-G solvation = -23937.577023 eV Core-core repulsion = 20734.111987 eV Total energy + Delta-G solvation = -3203.465036 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.43261 -38.45168 -36.38513 -34.39928 -32.58134 -31.76341 -30.20980 -29.09482 -27.61547 -27.37677 -25.12424 -24.87606 -22.72357 -21.46448 -20.30112 -19.52668 -18.56171 -16.94876 -16.68412 -16.10189 -15.43847 -15.11952 -14.47592 -14.36744 -14.07092 -13.95420 -13.72562 -13.65861 -13.24195 -12.77553 -12.61706 -12.51612 -12.30268 -12.22103 -12.13422 -12.06507 -11.83460 -11.74044 -11.42507 -11.21676 -11.14680 -10.97475 -10.83599 -10.37381 -9.99703 -9.89890 -9.63211 -9.41781 -9.09776 -8.95100 -8.79300 -8.46366 -7.71402 -6.02946 -4.01743 2.79310 3.06571 3.34048 3.45077 3.50366 4.36930 4.47953 4.51248 4.70755 4.83059 4.89490 5.10416 5.17511 5.27978 5.29948 5.40231 5.55217 5.57443 5.58916 5.61965 5.63209 5.67965 5.75930 5.79612 5.81301 5.95833 6.05766 6.11377 6.19246 6.24815 6.28993 6.36322 6.43789 6.55942 6.62525 6.70874 6.88408 6.94481 7.26006 7.43134 7.50889 7.69236 7.71853 7.92046 8.39366 8.56126 8.99845 9.60556 11.10218 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033781 B = 0.004057 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.676112 B = 6900.148133 C = 7156.057430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.063 3.937 3 H 0.104 0.896 4 C 0.523 3.477 5 O -0.512 6.512 6 N -0.731 5.731 7 C 0.170 3.830 8 C -0.164 4.164 9 C -0.154 4.154 10 C -0.163 4.163 11 N -0.517 5.517 12 C 0.058 3.942 13 C -0.117 4.117 14 C -0.122 4.122 15 C 0.021 3.979 16 H 0.036 0.964 17 C -0.513 4.513 18 H 0.072 0.928 19 C 0.071 3.929 20 N -0.904 5.904 21 Si 0.887 3.113 22 H -0.280 1.280 23 H -0.299 1.299 24 H -0.262 1.262 25 C 0.077 3.923 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.396 0.604 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.080 0.920 40 H 0.025 0.975 41 H 0.064 0.936 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.045 0.955 45 H 0.263 0.737 46 H 0.066 0.934 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.661 -2.003 23.409 23.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.050 4.050 3 H 0.121 0.879 4 C 0.309 3.691 5 O -0.386 6.386 6 N -0.385 5.385 7 C 0.084 3.916 8 C -0.222 4.222 9 C -0.212 4.212 10 C -0.222 4.222 11 N -0.241 5.241 12 C -0.069 4.069 13 C -0.155 4.155 14 C -0.159 4.159 15 C 0.001 3.999 16 H 0.054 0.946 17 C -0.551 4.551 18 H 0.090 0.910 19 C -0.131 4.131 20 N -0.542 5.542 21 Si 0.718 3.282 22 H -0.207 1.207 23 H -0.227 1.227 24 H -0.187 1.187 25 C -0.050 4.050 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.230 0.770 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.043 0.957 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.596 -2.775 23.170 23.480 hybrid contribution -0.717 -0.262 -0.265 0.808 sum -3.313 -3.037 22.905 23.342 Atomic orbital electron populations 1.22420 0.95893 1.02977 1.02890 1.21638 0.93793 0.99005 0.90521 0.87865 1.20622 0.79794 0.84618 0.84032 1.90603 1.36253 1.25578 1.86189 1.46219 1.54656 1.32314 1.05327 1.20273 0.94426 0.92575 0.84304 1.22226 0.94295 1.02179 1.03518 1.22084 1.01445 1.00767 0.96898 1.22224 1.00715 0.95729 1.03482 1.61921 1.58279 1.02704 1.01217 1.22153 0.95345 0.89817 0.99614 1.21617 1.01132 0.97401 0.95325 1.22021 1.00801 0.98160 0.94951 1.19154 0.96382 0.91472 0.92846 0.94592 1.20998 1.33728 1.10320 0.90083 0.90992 1.24971 0.95611 0.96838 0.95650 1.69904 1.46112 1.39377 0.98809 0.86832 0.80272 0.83675 0.77452 1.20735 1.22687 1.18701 1.22138 0.98213 0.96271 0.88341 0.91806 0.92261 0.90872 0.76985 0.92812 0.92241 0.90021 0.92077 0.91042 0.92000 0.90176 0.92184 0.92934 0.90147 0.95733 0.91763 0.93046 0.92705 0.93674 0.92740 0.91564 0.95259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 8.35 37.16 0.31 -1.81 16 2 C 0.06 0.87 2.73 -68.86 -0.19 0.68 16 3 H 0.10 1.31 7.99 -51.93 -0.41 0.90 16 4 C 0.52 7.06 6.25 -10.99 -0.07 7.00 16 5 O -0.51 -8.62 10.53 5.56 0.06 -8.56 16 6 N -0.73 -7.18 5.00 -47.61 -0.24 -7.42 16 7 C 0.17 1.56 1.06 -131.82 -0.14 1.42 16 8 C -0.16 -1.69 8.40 37.16 0.31 -1.37 16 9 C -0.15 -0.97 8.59 37.16 0.32 -0.65 16 10 C -0.16 -1.62 8.40 37.16 0.31 -1.31 16 11 N -0.52 -9.27 4.34 -228.07 -0.99 -10.26 16 12 C 0.06 1.03 4.36 -3.83 -0.02 1.01 16 13 C -0.12 -2.26 6.09 -26.64 -0.16 -2.42 16 14 C -0.12 -2.73 4.74 -26.61 -0.13 -2.86 16 15 C 0.02 0.50 1.85 -91.69 -0.17 0.33 16 16 H 0.04 0.93 7.20 -51.93 -0.37 0.55 16 17 C -0.51 -14.45 9.14 -34.44 -0.31 -14.77 16 18 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 19 C 0.07 2.06 5.45 -17.82 -0.10 1.97 16 20 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 21 Si 0.89 22.67 24.36 -169.99 -4.14 18.53 16 22 H -0.28 -6.98 6.89 56.52 0.39 -6.59 16 23 H -0.30 -7.65 7.11 56.52 0.40 -7.24 16 24 H -0.26 -6.55 6.53 56.52 0.37 -6.18 16 25 C 0.08 1.55 4.35 -3.83 -0.02 1.53 16 26 H 0.06 0.79 6.46 -51.93 -0.34 0.45 16 27 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16 28 H 0.07 0.92 6.81 -51.93 -0.35 0.56 16 29 H 0.40 2.89 7.89 -40.82 -0.32 2.57 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.10 6.17 -51.93 -0.32 0.78 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 1.03 6.17 -51.93 -0.32 0.71 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 1.41 5.78 -51.93 -0.30 1.11 16 40 H 0.02 0.42 6.58 -51.93 -0.34 0.07 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.05 1.07 3.37 -51.93 -0.17 0.90 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.07 1.31 8.01 -51.93 -0.42 0.90 16 47 H 0.03 0.58 6.87 -51.93 -0.36 0.23 16 LS Contribution 343.05 15.07 5.17 5.17 Total: -1.00 -32.09 343.05 -7.66 -39.75 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -8.25 Total: 1.20 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -0.05 Total: -11.26 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -0.46 Total: -44.83 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.06 Total: -8.56 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.14 Total: 18.53 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.09 -7.66 -39.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397669344.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.142 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds