Wall clock time and date at job start Tue Mar 31 2020 05:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46872 * 2 1 4 4 C 1.50698 * 109.46825 * 120.00069 * 2 1 3 5 5 O 1.21277 * 119.99509 * 120.00084 * 4 2 1 6 6 N 1.34776 * 120.00102 * 299.99758 * 4 2 1 7 7 C 1.46501 * 119.99567 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47087 * 60.00411 * 7 6 4 9 9 C 1.53004 * 109.46943 * 180.02562 * 7 6 4 10 10 C 1.53000 * 109.47483 * 300.00332 * 7 6 4 11 11 N 1.46901 * 109.47095 * 240.00462 * 2 1 3 12 12 C 1.46851 * 110.99542 * 305.78884 * 11 2 1 13 13 C 1.53044 * 109.51994 * 185.84303 * 12 11 2 14 14 C 1.53123 * 109.27512 * 300.81709 * 13 12 11 15 15 C 1.53118 * 109.15778 * 57.65945 * 14 13 12 16 16 H 1.09001 * 109.54037 * 62.30404 * 15 14 13 17 17 C 1.50706 * 109.50268 * 182.40341 * 15 14 13 18 18 H 1.07995 * 120.00167 * 119.52258 * 17 15 14 19 19 C 1.37879 * 119.99394 * 299.79957 * 17 15 14 20 20 N 1.31514 * 119.99350 * 179.97438 * 19 17 15 21 21 Si 1.86798 * 120.00608 * 0.02562 * 19 17 15 22 22 H 1.48500 * 109.47353 * 89.99430 * 21 19 17 23 23 H 1.48494 * 109.47031 * 209.99977 * 21 19 17 24 24 H 1.48504 * 109.46680 * 329.99678 * 21 19 17 25 25 C 1.46842 * 111.00029 * 69.99790 * 11 2 1 26 26 H 1.09000 * 109.47057 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47687 * 299.99846 * 1 2 3 28 28 H 1.09007 * 109.47367 * 60.00202 * 1 2 3 29 29 H 0.96997 * 120.00110 * 0.02562 * 6 4 2 30 30 H 1.09000 * 109.47057 * 59.99900 * 8 7 6 31 31 H 1.08996 * 109.47010 * 179.97438 * 8 7 6 32 32 H 1.08990 * 109.47083 * 299.99539 * 8 7 6 33 33 H 1.09002 * 109.47206 * 59.99821 * 9 7 6 34 34 H 1.08996 * 109.47374 * 180.02562 * 9 7 6 35 35 H 1.09004 * 109.47008 * 300.00560 * 9 7 6 36 36 H 1.09003 * 109.47044 * 59.99898 * 10 7 6 37 37 H 1.08996 * 109.47129 * 180.02562 * 10 7 6 38 38 H 1.09002 * 109.46685 * 300.00191 * 10 7 6 39 39 H 1.09001 * 109.46322 * 305.85548 * 12 11 2 40 40 H 1.08999 * 109.46740 * 65.82656 * 12 11 2 41 41 H 1.09001 * 109.50153 * 60.76039 * 13 12 11 42 42 H 1.09000 * 109.50059 * 180.87918 * 13 12 11 43 43 H 1.08990 * 109.52665 * 297.75102 * 14 13 12 44 44 H 1.08997 * 109.51718 * 177.55885 * 14 13 12 45 45 H 0.97005 * 119.99656 * 180.02562 * 20 19 17 46 46 H 1.08993 * 109.46277 * 54.14433 * 25 11 2 47 47 H 1.09000 * 109.46334 * 294.17171 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4546 7 6 2.1945 -0.9410 3.6507 8 6 3.7246 -0.9416 3.6509 9 6 1.6842 -0.2201 4.9000 10 6 1.6840 -2.3833 3.6504 11 7 2.0197 -0.6924 -1.1995 12 6 1.4391 -2.0372 -1.3046 13 6 2.0793 -2.7802 -2.4795 14 6 1.8310 -1.9944 -3.7701 15 6 2.4025 -0.5822 -3.6164 16 1 3.4805 -0.6395 -3.4656 17 6 2.1103 0.2169 -4.8603 18 1 1.5166 1.1167 -4.7971 19 6 2.5963 -0.2041 -6.0800 20 7 2.3409 0.4930 -7.1656 21 14 3.6162 -1.7651 -6.1908 22 1 2.7206 -2.9259 -6.4268 23 1 4.5807 -1.6476 -7.3138 24 1 4.3583 -1.9628 -4.9197 25 6 1.7530 0.0971 -2.4086 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.1488 0.5385 2.5436 30 1 4.0883 0.0859 3.6511 31 1 4.0875 -1.4554 4.5410 32 1 4.0878 -1.4555 2.7610 33 1 0.5941 -0.2199 4.8996 34 1 2.0475 -0.7339 5.7899 35 1 2.0475 0.8076 4.9003 36 1 2.0472 -2.8972 2.7603 37 1 2.0466 -2.8973 4.5405 38 1 0.5940 -2.3828 3.6502 39 1 1.6264 -2.5867 -0.3820 40 1 0.3644 -1.9572 -1.4677 41 1 3.1522 -2.8727 -2.3104 42 1 1.6371 -3.7726 -2.5669 43 1 0.7595 -1.9351 -3.9600 44 1 2.3223 -2.4975 -4.6029 45 1 2.6825 0.1966 -8.0238 46 1 2.1680 1.0976 -2.2879 47 1 0.6768 0.1671 -2.5666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397669344.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:28 Heat of formation + Delta-G solvation = -60.579732 kcal Electronic energy + Delta-G solvation = -23938.573036 eV Core-core repulsion = 20734.111987 eV Total energy + Delta-G solvation = -3204.461049 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.50526 -39.78494 -37.40599 -35.92594 -34.36867 -32.95819 -31.99098 -30.32025 -28.20057 -28.16068 -26.86761 -26.28690 -24.08192 -23.13750 -21.46693 -20.45557 -20.16026 -18.83514 -17.94428 -17.35995 -16.72088 -16.25022 -15.88434 -15.63378 -15.45306 -15.06948 -15.03013 -14.88725 -14.69268 -14.44949 -13.91332 -13.78170 -13.42014 -13.23368 -13.09458 -13.01653 -12.91613 -12.83882 -12.68828 -12.52725 -12.33338 -12.26466 -12.02770 -11.88391 -11.86887 -11.63914 -11.42258 -11.03540 -10.92759 -10.61864 -10.23973 -9.95411 -9.08827 -8.30470 -6.32647 1.28852 1.35622 1.46832 1.76811 2.15657 2.32572 3.05712 3.08148 3.72317 3.95389 3.99193 4.05160 4.10229 4.15973 4.19328 4.22621 4.29820 4.47482 4.58546 4.66786 4.72385 4.74529 4.75768 4.77748 4.84933 4.89447 4.90030 4.94577 4.99904 5.04397 5.08429 5.16702 5.21028 5.25245 5.25957 5.40930 5.44326 5.45836 5.63495 5.72573 5.73915 6.17552 6.20818 6.35942 6.73943 6.75437 7.33170 7.44020 8.86063 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033781 B = 0.004057 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.676112 B = 6900.148133 C = 7156.057430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.059 3.941 3 H 0.115 0.885 4 C 0.524 3.476 5 O -0.549 6.549 6 N -0.714 5.714 7 C 0.166 3.834 8 C -0.162 4.162 9 C -0.147 4.147 10 C -0.160 4.160 11 N -0.533 5.533 12 C 0.065 3.935 13 C -0.113 4.113 14 C -0.119 4.119 15 C 0.019 3.981 16 H 0.018 0.982 17 C -0.514 4.514 18 H 0.040 0.960 19 C 0.017 3.983 20 N -0.948 5.948 21 Si 0.946 3.054 22 H -0.267 1.267 23 H -0.298 1.298 24 H -0.256 1.256 25 C 0.091 3.909 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.411 0.589 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.035 0.965 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.032 0.968 45 H 0.265 0.735 46 H 0.064 0.936 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.450 -2.552 26.366 26.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.053 4.053 3 H 0.132 0.868 4 C 0.310 3.690 5 O -0.426 6.426 6 N -0.368 5.368 7 C 0.081 3.919 8 C -0.220 4.220 9 C -0.204 4.204 10 C -0.219 4.219 11 N -0.257 5.257 12 C -0.062 4.062 13 C -0.151 4.151 14 C -0.156 4.156 15 C 0.000 4.000 16 H 0.036 0.964 17 C -0.552 4.552 18 H 0.058 0.942 19 C -0.180 4.180 20 N -0.588 5.588 21 Si 0.774 3.226 22 H -0.194 1.194 23 H -0.226 1.226 24 H -0.180 1.180 25 C -0.037 4.037 26 H 0.076 0.924 27 H 0.113 0.887 28 H 0.081 0.919 29 H 0.248 0.752 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.050 0.950 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.414 -3.300 26.179 26.606 hybrid contribution -0.483 -0.006 -1.112 1.212 sum -3.897 -3.306 25.068 25.583 Atomic orbital electron populations 1.22345 0.93801 1.02980 1.04203 1.21755 0.95454 0.99081 0.88981 0.86760 1.20532 0.79456 0.84130 0.84882 1.90607 1.38020 1.27249 1.86771 1.46086 1.53861 1.32403 1.04468 1.20426 0.93724 0.92674 0.85099 1.22190 0.95288 1.02011 1.02527 1.22037 1.02172 1.00898 0.95329 1.22180 1.01085 0.96008 1.02580 1.61776 1.59458 1.02897 1.01583 1.22076 0.95650 0.89550 0.98928 1.21587 1.00791 0.98475 0.94199 1.21906 1.00289 0.97186 0.96259 1.19075 0.95698 0.92509 0.92743 0.96405 1.21303 1.32407 1.09577 0.91938 0.94153 1.25741 0.96942 0.99942 0.95371 1.70030 1.47922 1.41388 0.99499 0.85880 0.78932 0.80335 0.77491 1.19359 1.22620 1.18049 1.21811 0.97676 0.95979 0.88197 0.92397 0.88657 0.91854 0.75181 0.92518 0.90664 0.93576 0.90871 0.89893 0.91114 0.93456 0.90720 0.92197 0.89714 0.94712 0.93003 0.90529 0.92806 0.94988 0.92576 0.91764 0.95176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.58 8.35 71.98 0.60 -2.98 16 2 C 0.06 1.53 2.73 44.17 0.12 1.65 16 3 H 0.11 2.68 7.99 -2.38 -0.02 2.66 16 4 C 0.52 13.29 6.25 87.66 0.55 13.84 16 5 O -0.55 -18.21 10.53 -3.02 -0.03 -18.24 16 6 N -0.71 -12.14 5.00 -422.92 -2.11 -14.26 16 7 C 0.17 2.62 1.06 3.60 0.00 2.63 16 8 C -0.16 -3.08 8.40 71.98 0.60 -2.48 16 9 C -0.15 -1.28 8.59 71.98 0.62 -0.66 16 10 C -0.16 -2.86 8.40 71.98 0.60 -2.26 16 11 N -0.53 -18.60 4.34 -875.49 -3.80 -22.41 16 12 C 0.07 2.21 4.36 86.33 0.38 2.59 16 13 C -0.11 -4.20 6.09 30.65 0.19 -4.01 16 14 C -0.12 -5.25 4.74 30.67 0.15 -5.11 16 15 C 0.02 0.92 1.85 -11.48 -0.02 0.90 16 16 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 17 C -0.51 -29.70 9.14 25.60 0.23 -29.46 16 18 H 0.04 2.52 7.99 -2.91 -0.02 2.50 16 19 C 0.02 1.02 5.45 84.66 0.46 1.48 16 20 N -0.95 -60.06 13.96 21.45 0.30 -59.76 16 21 Si 0.95 47.33 24.36 68.60 1.67 49.00 16 22 H -0.27 -12.74 6.89 99.48 0.69 -12.06 16 23 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 24 H -0.26 -12.44 6.53 99.48 0.65 -11.79 16 25 C 0.09 3.64 4.35 86.33 0.38 4.01 16 26 H 0.06 1.28 6.46 -2.39 -0.02 1.26 16 27 H 0.09 1.25 7.56 -2.39 -0.02 1.24 16 28 H 0.06 1.45 6.81 -2.38 -0.02 1.44 16 29 H 0.41 4.47 7.89 -92.71 -0.73 3.74 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.23 6.17 -2.39 -0.01 1.22 16 33 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.05 1.18 6.17 -2.39 -0.01 1.17 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 2.87 5.78 -2.39 -0.01 2.85 16 40 H 0.03 1.11 6.58 -2.39 -0.02 1.09 16 41 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.03 1.49 3.37 -2.39 -0.01 1.48 16 45 H 0.27 15.79 8.31 -92.70 -0.77 15.02 16 46 H 0.06 2.56 8.01 -2.39 -0.02 2.54 16 47 H 0.03 1.19 6.87 -2.39 -0.02 1.18 16 Total: -1.00 -71.68 343.05 1.01 -70.66 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.13 Total: 14.87 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 4.86 Total: -19.87 kcal Atomic # 7 Polarization: -90.81 SS G_CDS: -5.62 Total: -96.42 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.03 Total: -18.24 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.67 Total: 49.00 kcal Total: -71.68 1.01 -70.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397669344.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.082 kcal (2) G-P(sol) polarization free energy of solvation -71.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds