Wall clock time and date at job start Tue Mar 31 2020 05:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46865 * 2 1 4 4 C 1.50695 * 109.47102 * 239.99548 * 2 1 3 5 5 O 1.21280 * 120.00099 * 269.12498 * 4 2 1 6 6 N 1.34781 * 119.99892 * 89.12687 * 4 2 1 7 7 C 1.46503 * 119.99654 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.47174 * 60.00483 * 7 6 4 9 9 C 1.53003 * 109.46675 * 180.02562 * 7 6 4 10 10 C 1.53001 * 109.47333 * 300.00007 * 7 6 4 11 11 N 1.46897 * 109.46871 * 119.99716 * 2 1 3 12 12 C 1.46852 * 111.00154 * 172.10636 * 11 2 1 13 13 C 1.53031 * 109.52655 * 174.15833 * 12 11 2 14 14 C 1.53118 * 109.27895 * 59.17820 * 13 12 11 15 15 C 1.53116 * 109.16254 * 302.34543 * 14 13 12 16 16 H 1.08999 * 109.50457 * 297.67470 * 15 14 13 17 17 C 1.50702 * 109.50471 * 177.59329 * 15 14 13 18 18 H 1.08004 * 119.99914 * 240.00089 * 17 15 14 19 19 C 1.37869 * 120.00016 * 60.00069 * 17 15 14 20 20 N 1.31516 * 120.00028 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 120.00174 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47341 * 90.00002 * 21 19 17 23 23 H 1.48502 * 109.47120 * 210.00239 * 21 19 17 24 24 H 1.48498 * 109.47011 * 329.99902 * 21 19 17 25 25 C 1.46849 * 111.00532 * 47.89410 * 11 2 1 26 26 H 1.08997 * 109.47067 * 60.00457 * 1 2 3 27 27 H 1.09002 * 109.46756 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47357 * 300.00144 * 1 2 3 29 29 H 0.96996 * 120.00046 * 359.97438 * 6 4 2 30 30 H 1.08998 * 109.47004 * 59.99451 * 8 7 6 31 31 H 1.08998 * 109.46574 * 179.97438 * 8 7 6 32 32 H 1.08997 * 109.46429 * 299.99417 * 8 7 6 33 33 H 1.09000 * 109.46971 * 60.00468 * 9 7 6 34 34 H 1.09000 * 109.47028 * 180.02562 * 9 7 6 35 35 H 1.08998 * 109.47295 * 299.99889 * 9 7 6 36 36 H 1.08999 * 109.46893 * 60.00377 * 10 7 6 37 37 H 1.09000 * 109.46895 * 180.02562 * 10 7 6 38 38 H 1.08998 * 109.46783 * 300.00015 * 10 7 6 39 39 H 1.09003 * 109.45704 * 294.17821 * 12 11 2 40 40 H 1.09004 * 109.46186 * 54.13888 * 12 11 2 41 41 H 1.09002 * 109.50309 * 179.12168 * 13 12 11 42 42 H 1.09000 * 109.50541 * 299.19504 * 13 12 11 43 43 H 1.09005 * 109.52055 * 62.25258 * 14 13 12 44 44 H 1.08997 * 109.52499 * 182.43929 * 14 13 12 45 45 H 0.97000 * 120.00133 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.46303 * 305.85903 * 25 11 2 47 47 H 1.09003 * 109.45787 * 65.82179 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.2496 -1.9032 -1.1957 6 7 2.2402 -0.0205 -2.3693 7 6 2.7291 -0.7111 -3.5653 8 6 1.7322 -1.7993 -3.9691 9 6 2.8788 0.2940 -4.7091 10 6 4.0873 -1.3491 -3.2665 11 7 2.0196 -0.6924 1.1995 12 6 3.4754 -0.8773 1.1431 13 6 3.9677 -1.4675 2.4664 14 6 3.2730 -2.8100 2.7107 15 6 1.7567 -2.5976 2.7167 16 1 1.4859 -1.9307 3.5353 17 6 1.0636 -3.9235 2.8976 18 1 0.3827 -4.2846 2.1410 19 6 1.2985 -4.6754 4.0290 20 7 2.1279 -4.2359 4.9502 21 14 0.4399 -6.3193 4.2530 22 1 1.2741 -7.3977 3.6646 23 1 0.2419 -6.5810 5.7013 24 1 -0.8789 -6.2858 3.5712 25 6 1.3284 -1.9746 1.3861 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 2.0661 0.9333 -2.3972 30 1 0.7647 -1.3448 -4.1820 31 1 2.0958 -2.3128 -4.8592 32 1 1.6260 -2.5152 -3.1541 33 1 3.5893 1.0689 -4.4212 34 1 3.2421 -0.2199 -5.5991 35 1 1.9115 0.7488 -4.9222 36 1 3.9810 -2.0650 -2.4515 37 1 4.4512 -1.8625 -4.1565 38 1 4.7974 -0.5738 -2.9789 39 1 3.7238 -1.5566 0.3276 40 1 3.9574 0.0855 0.9732 41 1 5.0460 -1.6191 2.4185 42 1 3.7325 -0.7820 3.2805 43 1 3.5399 -3.5079 1.9170 44 1 3.5881 -3.2135 3.6729 45 1 2.2930 -4.7648 5.7464 46 1 0.2512 -1.8088 1.3927 47 1 1.5870 -2.6487 0.5695 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397669346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:31 Heat of formation + Delta-G solvation = -43.536056 kcal Electronic energy + Delta-G solvation = -24282.982714 eV Core-core repulsion = 21079.260734 eV Total energy + Delta-G solvation = -3203.721980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.47941 -38.07818 -36.11627 -34.07639 -32.53522 -31.65630 -29.80040 -28.90641 -27.53991 -27.28590 -25.10895 -24.29010 -22.44597 -21.16255 -20.08748 -19.52930 -18.64489 -16.85910 -16.38246 -15.87733 -15.20450 -14.89529 -14.46231 -14.18685 -14.02993 -14.00509 -13.57238 -13.06401 -12.75647 -12.58091 -12.47847 -12.35505 -12.16703 -12.05424 -11.95845 -11.82868 -11.67533 -11.27680 -11.15826 -11.09593 -10.94867 -10.81497 -10.56842 -10.42376 -9.95466 -9.75228 -9.59610 -9.31631 -8.97326 -8.88512 -8.55647 -8.19229 -7.39105 -5.86506 -3.91375 2.85100 3.24026 3.38227 3.44290 3.47988 4.42206 4.56896 4.63260 4.78594 4.93445 5.04283 5.23666 5.34414 5.37125 5.43398 5.47782 5.65651 5.66652 5.68188 5.70128 5.83359 5.85925 5.89619 5.94433 6.09091 6.21441 6.28040 6.31724 6.34866 6.45190 6.62281 6.66744 6.72488 6.87634 6.98880 7.20854 7.35805 7.47934 7.62922 7.74697 7.86407 7.90853 8.22863 8.29996 8.48110 8.62953 9.12721 9.72032 11.19598 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022945 B = 0.004611 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.999598 B = 6070.370981 C = 6319.166231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.064 3.936 3 H 0.090 0.910 4 C 0.487 3.513 5 O -0.518 6.518 6 N -0.730 5.730 7 C 0.167 3.833 8 C -0.163 4.163 9 C -0.153 4.153 10 C -0.163 4.163 11 N -0.509 5.509 12 C 0.052 3.948 13 C -0.114 4.114 14 C -0.109 4.109 15 C 0.056 3.944 16 H 0.029 0.971 17 C -0.508 4.508 18 H 0.052 0.948 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.888 3.112 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 C 0.048 3.952 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.395 0.605 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.043 0.957 40 H 0.049 0.951 41 H 0.044 0.956 42 H 0.058 0.942 43 H 0.030 0.970 44 H 0.088 0.912 45 H 0.258 0.742 46 H 0.059 0.941 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.394 11.951 -16.618 20.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.049 4.049 3 H 0.108 0.892 4 C 0.273 3.727 5 O -0.393 6.393 6 N -0.385 5.385 7 C 0.081 3.919 8 C -0.221 4.221 9 C -0.211 4.211 10 C -0.221 4.221 11 N -0.232 5.232 12 C -0.076 4.076 13 C -0.152 4.152 14 C -0.147 4.147 15 C 0.038 3.962 16 H 0.047 0.953 17 C -0.547 4.547 18 H 0.071 0.929 19 C -0.139 4.139 20 N -0.530 5.530 21 Si 0.717 3.283 22 H -0.209 1.209 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.078 4.078 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.228 0.772 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.049 0.951 44 H 0.107 0.893 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.520 11.300 -15.988 19.637 hybrid contribution -0.215 -0.856 -0.668 1.107 sum 1.305 10.444 -16.655 19.702 Atomic orbital electron populations 1.21855 0.92361 1.03611 1.02185 1.21943 0.97226 0.98619 0.87062 0.89222 1.22361 0.77105 0.88412 0.84854 1.90649 1.50085 1.14966 1.83570 1.46486 1.68876 1.11969 1.11128 1.20286 0.94277 0.92626 0.84683 1.22211 0.98173 0.99309 1.02395 1.22079 1.02146 0.98985 0.97894 1.22220 0.95233 1.01628 1.03061 1.62569 1.05143 1.25064 1.30470 1.22174 0.87723 0.98622 0.99076 1.21633 0.97951 0.99812 0.95790 1.21625 0.98011 0.92808 1.02240 1.18644 0.91916 0.94698 0.90986 0.95273 1.21162 1.25438 1.03840 1.04223 0.92930 1.24921 0.95305 0.97734 0.95925 1.69899 1.35777 1.37949 1.09351 0.86655 0.80053 0.84586 0.77040 1.20853 1.21350 1.20016 1.22647 0.96762 0.87397 1.01013 0.92640 0.91067 0.90551 0.77163 0.92970 0.92285 0.90086 0.92117 0.91138 0.92123 0.90097 0.92265 0.92966 0.93836 0.93259 0.93753 0.92366 0.95082 0.89331 0.93228 0.92284 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.52 37.16 0.32 -1.59 16 2 C 0.06 0.95 2.98 -68.87 -0.21 0.74 16 3 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.49 7.25 5.41 -10.99 -0.06 7.19 16 5 O -0.52 -9.77 8.71 5.56 0.05 -9.72 16 6 N -0.73 -8.10 5.11 -47.60 -0.24 -8.34 16 7 C 0.17 1.77 1.06 -131.81 -0.14 1.63 16 8 C -0.16 -1.90 8.40 37.16 0.31 -1.58 16 9 C -0.15 -1.14 8.59 37.16 0.32 -0.82 16 10 C -0.16 -1.94 8.40 37.16 0.31 -1.63 16 11 N -0.51 -9.65 4.74 -228.08 -1.08 -10.73 16 12 C 0.05 0.98 4.86 -3.83 -0.02 0.96 16 13 C -0.11 -2.38 6.09 -26.65 -0.16 -2.54 16 14 C -0.11 -2.74 5.02 -26.61 -0.13 -2.87 16 15 C 0.06 1.48 2.26 -91.69 -0.21 1.27 16 16 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 17 C -0.51 -14.54 8.56 -34.44 -0.29 -14.83 16 18 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 20 N -0.89 -26.19 11.35 55.43 0.63 -25.56 16 21 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.05 1.08 3.81 -3.83 -0.01 1.06 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 1.11 6.19 -51.93 -0.32 0.79 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.39 3.25 8.47 -40.82 -0.35 2.90 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.23 6.17 -51.93 -0.32 0.91 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 1.25 6.17 -51.93 -0.32 0.93 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.04 0.89 6.03 -51.93 -0.31 0.58 16 40 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.09 2.46 6.15 -51.93 -0.32 2.14 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.06 1.30 5.81 -51.93 -0.30 1.00 16 47 H 0.06 1.37 5.76 -51.93 -0.30 1.07 16 LS Contribution 348.95 15.07 5.26 5.26 Total: -1.00 -31.27 348.95 -8.90 -40.17 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -8.42 Total: 3.25 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -0.07 Total: -11.32 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -0.69 Total: -44.64 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.05 Total: -9.72 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.27 -8.90 -40.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397669346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.366 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds