Wall clock time and date at job start Tue Mar 31 2020 05:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46865 * 2 1 4 4 C 1.50695 * 109.47102 * 239.99548 * 2 1 3 5 5 O 1.21280 * 120.00099 * 269.12498 * 4 2 1 6 6 N 1.34781 * 119.99892 * 89.12687 * 4 2 1 7 7 C 1.46503 * 119.99654 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.47174 * 60.00483 * 7 6 4 9 9 C 1.53003 * 109.46675 * 180.02562 * 7 6 4 10 10 C 1.53001 * 109.47333 * 300.00007 * 7 6 4 11 11 N 1.46897 * 109.46871 * 119.99716 * 2 1 3 12 12 C 1.46852 * 111.00154 * 172.10636 * 11 2 1 13 13 C 1.53031 * 109.52655 * 174.15833 * 12 11 2 14 14 C 1.53118 * 109.27895 * 59.17820 * 13 12 11 15 15 C 1.53116 * 109.16254 * 302.34543 * 14 13 12 16 16 H 1.08999 * 109.50457 * 297.67470 * 15 14 13 17 17 C 1.50702 * 109.50471 * 177.59329 * 15 14 13 18 18 H 1.08004 * 119.99914 * 240.00089 * 17 15 14 19 19 C 1.37869 * 120.00016 * 60.00069 * 17 15 14 20 20 N 1.31516 * 120.00028 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 120.00174 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47341 * 90.00002 * 21 19 17 23 23 H 1.48502 * 109.47120 * 210.00239 * 21 19 17 24 24 H 1.48498 * 109.47011 * 329.99902 * 21 19 17 25 25 C 1.46849 * 111.00532 * 47.89410 * 11 2 1 26 26 H 1.08997 * 109.47067 * 60.00457 * 1 2 3 27 27 H 1.09002 * 109.46756 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47357 * 300.00144 * 1 2 3 29 29 H 0.96996 * 120.00046 * 359.97438 * 6 4 2 30 30 H 1.08998 * 109.47004 * 59.99451 * 8 7 6 31 31 H 1.08998 * 109.46574 * 179.97438 * 8 7 6 32 32 H 1.08997 * 109.46429 * 299.99417 * 8 7 6 33 33 H 1.09000 * 109.46971 * 60.00468 * 9 7 6 34 34 H 1.09000 * 109.47028 * 180.02562 * 9 7 6 35 35 H 1.08998 * 109.47295 * 299.99889 * 9 7 6 36 36 H 1.08999 * 109.46893 * 60.00377 * 10 7 6 37 37 H 1.09000 * 109.46895 * 180.02562 * 10 7 6 38 38 H 1.08998 * 109.46783 * 300.00015 * 10 7 6 39 39 H 1.09003 * 109.45704 * 294.17821 * 12 11 2 40 40 H 1.09004 * 109.46186 * 54.13888 * 12 11 2 41 41 H 1.09002 * 109.50309 * 179.12168 * 13 12 11 42 42 H 1.09000 * 109.50541 * 299.19504 * 13 12 11 43 43 H 1.09005 * 109.52055 * 62.25258 * 14 13 12 44 44 H 1.08997 * 109.52499 * 182.43929 * 14 13 12 45 45 H 0.97000 * 120.00133 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.46303 * 305.85903 * 25 11 2 47 47 H 1.09003 * 109.45787 * 65.82179 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.2496 -1.9032 -1.1957 6 7 2.2402 -0.0205 -2.3693 7 6 2.7291 -0.7111 -3.5653 8 6 1.7322 -1.7993 -3.9691 9 6 2.8788 0.2940 -4.7091 10 6 4.0873 -1.3491 -3.2665 11 7 2.0196 -0.6924 1.1995 12 6 3.4754 -0.8773 1.1431 13 6 3.9677 -1.4675 2.4664 14 6 3.2730 -2.8100 2.7107 15 6 1.7567 -2.5976 2.7167 16 1 1.4859 -1.9307 3.5353 17 6 1.0636 -3.9235 2.8976 18 1 0.3827 -4.2846 2.1410 19 6 1.2985 -4.6754 4.0290 20 7 2.1279 -4.2359 4.9502 21 14 0.4399 -6.3193 4.2530 22 1 1.2741 -7.3977 3.6646 23 1 0.2419 -6.5810 5.7013 24 1 -0.8789 -6.2858 3.5712 25 6 1.3284 -1.9746 1.3861 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 2.0661 0.9333 -2.3972 30 1 0.7647 -1.3448 -4.1820 31 1 2.0958 -2.3128 -4.8592 32 1 1.6260 -2.5152 -3.1541 33 1 3.5893 1.0689 -4.4212 34 1 3.2421 -0.2199 -5.5991 35 1 1.9115 0.7488 -4.9222 36 1 3.9810 -2.0650 -2.4515 37 1 4.4512 -1.8625 -4.1565 38 1 4.7974 -0.5738 -2.9789 39 1 3.7238 -1.5566 0.3276 40 1 3.9574 0.0855 0.9732 41 1 5.0460 -1.6191 2.4185 42 1 3.7325 -0.7820 3.2805 43 1 3.5399 -3.5079 1.9170 44 1 3.5881 -3.2135 3.6729 45 1 2.2930 -4.7648 5.7464 46 1 0.2512 -1.8088 1.3927 47 1 1.5870 -2.6487 0.5695 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397669346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:31 Heat of formation + Delta-G solvation = -65.168140 kcal Electronic energy + Delta-G solvation = -24283.920752 eV Core-core repulsion = 21079.260734 eV Total energy + Delta-G solvation = -3204.660018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.69051 -39.46611 -37.35014 -35.73892 -34.29115 -32.84712 -31.74070 -30.32736 -28.23401 -28.22006 -27.06035 -25.80053 -23.92957 -22.96743 -21.30913 -20.55118 -20.39315 -18.48635 -17.98181 -17.23632 -16.64056 -16.29546 -15.95121 -15.64101 -15.34823 -15.10268 -14.87104 -14.53822 -14.30863 -14.18389 -13.94535 -13.69311 -13.28627 -13.10491 -13.01615 -12.99217 -12.85128 -12.82969 -12.56513 -12.52900 -12.41114 -12.16609 -12.02708 -11.92853 -11.79632 -11.62493 -11.33274 -10.89330 -10.84910 -10.61203 -10.36890 -9.99552 -8.91374 -8.07428 -6.20853 1.38702 1.39630 1.50182 1.71031 2.27593 2.42633 3.06078 3.18818 3.76028 3.97722 4.00898 4.05177 4.15605 4.18406 4.27811 4.33300 4.47126 4.68977 4.69579 4.71172 4.75967 4.79192 4.84464 4.84707 4.90185 4.95024 4.96075 5.00071 5.07573 5.14846 5.20701 5.25175 5.30759 5.38004 5.38719 5.42246 5.52470 5.63205 5.72681 5.96963 6.12578 6.20610 6.26671 6.48509 6.72240 6.90853 7.42308 7.46264 8.97366 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022945 B = 0.004611 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.999598 B = 6070.370981 C = 6319.166231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.060 3.940 3 H 0.130 0.870 4 C 0.486 3.514 5 O -0.562 6.562 6 N -0.712 5.712 7 C 0.164 3.836 8 C -0.160 4.160 9 C -0.144 4.144 10 C -0.161 4.161 11 N -0.515 5.515 12 C 0.060 3.940 13 C -0.108 4.108 14 C -0.100 4.100 15 C 0.054 3.946 16 H -0.002 1.002 17 C -0.534 4.534 18 H 0.044 0.956 19 C 0.015 3.985 20 N -0.915 5.915 21 Si 0.953 3.047 22 H -0.279 1.279 23 H -0.278 1.278 24 H -0.269 1.269 25 C 0.070 3.930 26 H 0.091 0.909 27 H 0.040 0.960 28 H 0.079 0.921 29 H 0.413 0.587 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.027 0.973 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.008 0.992 44 H 0.058 0.942 45 H 0.260 0.740 46 H 0.058 0.942 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.328 14.209 -18.662 23.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.052 4.052 3 H 0.147 0.853 4 C 0.272 3.728 5 O -0.441 6.441 6 N -0.366 5.366 7 C 0.079 3.921 8 C -0.218 4.218 9 C -0.202 4.202 10 C -0.219 4.219 11 N -0.238 5.238 12 C -0.068 4.068 13 C -0.146 4.146 14 C -0.138 4.138 15 C 0.036 3.964 16 H 0.016 0.984 17 C -0.573 4.573 18 H 0.062 0.938 19 C -0.184 4.184 20 N -0.554 5.554 21 Si 0.778 3.222 22 H -0.205 1.205 23 H -0.203 1.203 24 H -0.194 1.194 25 C -0.057 4.057 26 H 0.110 0.890 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.250 0.750 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.045 0.955 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.027 0.973 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.451 13.614 -18.065 22.667 hybrid contribution -0.183 -1.539 -0.078 1.552 sum 1.268 12.075 -18.143 21.831 Atomic orbital electron populations 1.21834 0.91395 1.02191 1.04161 1.22159 0.98086 0.99595 0.85325 0.85258 1.22276 0.76864 0.87810 0.85873 1.90668 1.52048 1.17011 1.84339 1.46287 1.67327 1.12767 1.10208 1.20413 0.92994 0.93303 0.85429 1.22167 0.99232 0.99031 1.01402 1.22019 1.03431 0.98267 0.96473 1.22176 0.96439 1.01084 1.02182 1.62475 1.04962 1.22718 1.33655 1.22093 0.87937 0.99893 0.96884 1.21548 0.98771 0.97103 0.97154 1.21414 0.97934 0.94902 0.99598 1.18576 0.92452 0.93465 0.91945 0.98397 1.21495 1.25957 1.05371 1.04472 0.93812 1.25697 0.95916 1.01224 0.95546 1.70031 1.36549 1.39224 1.09646 0.85643 0.79091 0.80094 0.77350 1.20452 1.20335 1.19366 1.22181 0.96959 0.88782 0.97790 0.88988 0.94139 0.90238 0.74973 0.92049 0.90856 0.94231 0.90835 0.90079 0.90729 0.94262 0.90840 0.92181 0.95520 0.89505 0.91750 0.92472 0.97267 0.92380 0.93055 0.92360 0.94909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.52 71.98 0.61 -2.84 16 2 C 0.06 1.65 2.98 44.17 0.13 1.78 16 3 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 4 C 0.49 13.91 5.41 87.65 0.47 14.38 16 5 O -0.56 -21.84 8.71 -3.03 -0.03 -21.87 16 6 N -0.71 -13.85 5.11 -422.91 -2.16 -16.01 16 7 C 0.16 3.10 1.06 3.61 0.00 3.11 16 8 C -0.16 -3.56 8.40 71.98 0.60 -2.96 16 9 C -0.14 -1.54 8.59 71.98 0.62 -0.92 16 10 C -0.16 -3.64 8.40 71.98 0.60 -3.03 16 11 N -0.51 -19.28 4.74 -875.50 -4.15 -23.43 16 12 C 0.06 2.21 4.86 86.32 0.42 2.62 16 13 C -0.11 -4.53 6.09 30.64 0.19 -4.34 16 14 C -0.10 -5.29 5.02 30.67 0.15 -5.14 16 15 C 0.05 3.00 2.26 -11.49 -0.03 2.97 16 16 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 17 C -0.53 -32.01 8.56 25.60 0.22 -31.79 16 18 H 0.04 2.62 7.74 -2.91 -0.02 2.60 16 19 C 0.01 0.86 5.30 84.65 0.45 1.31 16 20 N -0.91 -55.58 11.35 21.44 0.24 -55.34 16 21 Si 0.95 46.23 29.54 68.60 2.03 48.25 16 22 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 24 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 25 C 0.07 3.28 3.81 86.33 0.33 3.61 16 26 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 27 H 0.04 1.26 6.19 -2.39 -0.01 1.25 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.41 5.00 8.47 -92.71 -0.79 4.22 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.04 1.23 6.17 -2.39 -0.01 1.21 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.04 1.24 6.17 -2.39 -0.01 1.22 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.03 1.10 6.03 -2.39 -0.01 1.09 16 40 H 0.09 2.59 8.12 -2.38 -0.02 2.57 16 41 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 44 H 0.06 3.39 6.15 -2.39 -0.01 3.37 16 45 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 46 H 0.06 2.68 5.81 -2.39 -0.01 2.66 16 47 H 0.03 1.69 5.76 -2.39 -0.01 1.68 16 Total: -1.00 -73.06 348.95 0.87 -72.19 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.15 Total: 17.43 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 4.78 Total: -21.23 kcal Atomic # 7 Polarization: -88.72 SS G_CDS: -6.06 Total: -94.78 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.03 Total: -21.87 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -73.06 0.87 -72.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397669346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.025 kcal (2) G-P(sol) polarization free energy of solvation -73.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds