Wall clock time and date at job start Tue Mar 31 2020 05:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47102 * 2 1 4 4 C 1.53009 * 109.46923 * 119.99664 * 2 1 3 5 5 N 1.46493 * 109.46807 * 174.99840 * 4 2 1 6 6 C 1.34783 * 119.99902 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99667 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00315 * 180.02562 * 6 5 4 9 9 H 1.08996 * 109.47113 * 326.83178 * 8 6 5 10 10 C 1.53006 * 109.47044 * 86.82551 * 8 6 5 11 11 N 1.46897 * 109.47200 * 206.82463 * 8 6 5 12 12 C 1.46844 * 110.99788 * 51.07503 * 11 8 6 13 13 C 1.53035 * 109.52617 * 174.16186 * 12 11 8 14 14 C 1.53122 * 109.27946 * 59.17264 * 13 12 11 15 15 C 1.53120 * 109.16174 * 302.35054 * 14 13 12 16 16 H 1.08995 * 109.50109 * 297.66929 * 15 14 13 17 17 C 1.50698 * 109.49949 * 177.59488 * 15 14 13 18 18 H 1.08008 * 119.99657 * 244.59837 * 17 15 14 19 19 C 1.37872 * 120.00167 * 64.59779 * 17 15 14 20 20 N 1.31510 * 120.00365 * 7.14238 * 19 17 15 21 21 Si 1.86804 * 119.99760 * 187.14074 * 19 17 15 22 22 H 1.48512 * 109.46874 * 94.94689 * 21 19 17 23 23 H 1.48501 * 109.47134 * 214.93897 * 21 19 17 24 24 H 1.48500 * 109.47602 * 334.94748 * 21 19 17 25 25 C 1.46844 * 111.00179 * 286.86139 * 11 8 6 26 26 H 1.09004 * 109.46936 * 300.00338 * 1 2 3 27 27 H 1.09001 * 109.46652 * 59.99764 * 1 2 3 28 28 H 1.08996 * 109.47143 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47267 * 239.99901 * 2 1 3 30 30 H 1.08998 * 109.47140 * 59.99823 * 3 2 1 31 31 H 1.09005 * 109.46734 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47046 * 299.99203 * 3 2 1 33 33 H 1.08998 * 109.46815 * 54.99819 * 4 2 1 34 34 H 1.08993 * 109.47129 * 295.00150 * 4 2 1 35 35 H 0.96995 * 120.00556 * 0.02562 * 5 4 2 36 36 H 1.08993 * 109.46948 * 179.97438 * 10 8 6 37 37 H 1.08997 * 109.47059 * 300.00008 * 10 8 6 38 38 H 1.09000 * 109.47125 * 60.00363 * 10 8 6 39 39 H 1.09010 * 109.46265 * 294.17299 * 12 11 8 40 40 H 1.08993 * 109.46658 * 54.14114 * 12 11 8 41 41 H 1.08994 * 109.50682 * 179.11906 * 13 12 11 42 42 H 1.09006 * 109.50035 * 299.19641 * 13 12 11 43 43 H 1.09006 * 109.52038 * 62.25530 * 14 13 12 44 44 H 1.09001 * 109.52136 * 182.44081 * 14 13 12 45 45 H 0.96994 * 120.00095 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.46726 * 305.85862 * 25 11 8 47 47 H 1.09006 * 109.46095 * 65.82744 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5000 -0.8264 1.1907 6 6 4.1730 -1.4292 2.1908 7 8 3.5698 -1.8841 3.1396 8 6 5.6749 -1.5369 2.1308 9 1 5.9900 -1.6472 1.0933 10 6 6.3009 -0.2722 2.7222 11 7 6.1131 -2.7072 2.9029 12 6 5.3720 -3.9098 2.5018 13 6 5.9522 -5.1310 3.2187 14 6 5.8478 -4.9255 4.7325 15 6 6.5868 -3.6409 5.1174 16 1 7.6433 -3.7405 4.8688 17 6 6.4389 -3.3998 6.5976 18 1 5.9027 -2.5320 6.9524 19 6 6.9880 -4.2870 7.4989 20 7 7.7583 -5.2644 7.0735 21 14 6.6378 -4.1008 9.3243 22 1 5.4957 -4.9724 9.7007 23 1 7.8395 -4.4965 10.1018 24 1 6.2995 -2.6857 9.6217 25 6 5.9882 -2.4629 4.3455 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.6767 1.9563 0.8899 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6053 -1.7197 1.2953 34 1 1.7516 -0.1583 2.1370 35 1 3.9824 -0.4622 0.4321 36 1 7.3872 -0.3503 2.6792 37 1 5.9757 0.5962 2.1493 38 1 5.9858 -0.1618 3.7598 39 1 4.3218 -3.7958 2.7707 40 1 5.4579 -4.0467 1.4239 41 1 5.3919 -6.0211 2.9327 42 1 6.9985 -5.2542 2.9389 43 1 4.7989 -4.8416 5.0171 44 1 6.2991 -5.7737 5.2472 45 1 8.1448 -5.8883 7.7076 46 1 6.5215 -1.5489 4.6067 47 1 4.9351 -2.3558 4.6058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397688531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:34 Heat of formation + Delta-G solvation = -52.920435 kcal Electronic energy + Delta-G solvation = -23584.703327 eV Core-core repulsion = 20380.574410 eV Total energy + Delta-G solvation = -3204.128917 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.27144 -37.85379 -36.49047 -34.06786 -33.29510 -32.26472 -29.82807 -29.11764 -27.53587 -26.63631 -24.89201 -24.04575 -21.90015 -21.16290 -20.76497 -19.69386 -18.64099 -16.83898 -16.54900 -16.05066 -15.53462 -15.16832 -14.66766 -14.38736 -14.13207 -14.04487 -13.61188 -13.29281 -13.05979 -12.71861 -12.64613 -12.46053 -12.35208 -12.04033 -11.98956 -11.90270 -11.44133 -11.28935 -11.21938 -11.04469 -11.01999 -10.80011 -10.58615 -10.43686 -10.00930 -9.93142 -9.71753 -9.30983 -8.99561 -8.85714 -8.59344 -8.19774 -7.43652 -5.89181 -3.90499 2.82034 3.25270 3.38293 3.44896 3.48691 4.41758 4.43917 4.54522 4.58645 4.69151 4.97682 5.20985 5.21648 5.28039 5.34941 5.37944 5.42918 5.48002 5.57165 5.64320 5.67429 5.76966 5.81802 5.91119 5.93083 5.98089 6.07774 6.20419 6.31690 6.38760 6.48637 6.64881 6.68696 6.83680 6.95940 7.17552 7.33053 7.41016 7.54564 7.72241 7.85208 7.88484 8.16251 8.24584 8.42073 8.62332 9.14051 9.72033 11.19816 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024750 B = 0.003856 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.035188 B = 7259.277063 C = 7489.257522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C -0.148 4.148 4 C 0.122 3.878 5 N -0.736 5.736 6 C 0.483 3.517 7 O -0.523 6.523 8 C 0.065 3.935 9 H 0.092 0.908 10 C -0.143 4.143 11 N -0.509 5.509 12 C 0.049 3.951 13 C -0.114 4.114 14 C -0.105 4.105 15 C 0.056 3.944 16 H 0.036 0.964 17 C -0.510 4.510 18 H 0.053 0.947 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.886 3.114 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 C 0.049 3.951 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.396 0.604 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.046 0.954 40 H 0.050 0.950 41 H 0.045 0.955 42 H 0.059 0.941 43 H 0.033 0.967 44 H 0.074 0.926 45 H 0.258 0.742 46 H 0.061 0.939 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.235 10.868 -17.207 22.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.206 4.206 4 C -0.003 4.003 5 N -0.390 5.390 6 C 0.268 3.732 7 O -0.398 6.398 8 C -0.048 4.048 9 H 0.110 0.890 10 C -0.201 4.201 11 N -0.232 5.232 12 C -0.078 4.078 13 C -0.151 4.151 14 C -0.143 4.143 15 C 0.037 3.963 16 H 0.054 0.946 17 C -0.549 4.549 18 H 0.071 0.929 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.714 3.286 22 H -0.209 1.209 23 H -0.214 1.214 24 H -0.200 1.200 25 C -0.077 4.077 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.230 0.770 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.052 0.948 44 H 0.092 0.908 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.062 10.285 -16.513 21.462 hybrid contribution -0.909 0.292 0.728 1.201 sum -9.972 10.577 -15.786 21.459 Atomic orbital electron populations 1.21766 0.94172 1.02213 1.02157 1.21353 0.96659 0.96685 0.97965 1.21866 1.01115 0.95561 1.02034 1.21376 0.80677 1.00458 0.97747 1.46325 1.07368 1.60887 1.24442 1.22474 0.91822 0.76995 0.81935 1.90714 1.70386 1.46102 1.32589 1.21944 0.87994 0.94521 1.00292 0.89015 1.21871 1.02160 0.94078 1.01986 1.62582 1.52850 1.00389 1.07368 1.22204 0.96847 0.91075 0.97703 1.21618 1.00190 0.94698 0.98644 1.21576 0.99165 1.02302 0.91261 1.18648 0.95740 0.88916 0.93021 0.94606 1.21151 1.34132 1.08659 0.90947 0.92898 1.24921 0.94777 0.95663 0.98416 1.69964 1.31826 1.16863 1.34120 0.86679 0.77683 0.78312 0.85905 1.20857 1.21383 1.19958 1.22630 1.00727 1.00611 0.83773 0.92314 0.92259 0.92339 0.90658 0.92392 0.92544 0.92500 0.91797 0.91706 0.76987 0.90414 0.92590 0.91060 0.93542 0.93145 0.93669 0.92212 0.94838 0.90780 0.93223 0.92083 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.19 37.16 0.34 -0.62 16 2 C -0.11 -0.78 2.96 -90.61 -0.27 -1.05 16 3 C -0.15 -0.97 9.07 37.16 0.34 -0.64 16 4 C 0.12 1.28 5.06 -4.04 -0.02 1.25 16 5 N -0.74 -8.17 5.28 -60.30 -0.32 -8.49 16 6 C 0.48 7.44 6.06 -10.98 -0.07 7.37 16 7 O -0.52 -10.54 12.37 5.56 0.07 -10.47 16 8 C 0.07 0.97 3.00 -68.86 -0.21 0.77 16 9 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 10 C -0.14 -1.92 8.47 37.16 0.31 -1.60 16 11 N -0.51 -9.76 4.75 -228.09 -1.08 -10.85 16 12 C 0.05 0.95 4.84 -3.84 -0.02 0.93 16 13 C -0.11 -2.37 6.09 -26.65 -0.16 -2.53 16 14 C -0.10 -2.63 5.08 -26.61 -0.14 -2.77 16 15 C 0.06 1.47 2.14 -91.69 -0.20 1.27 16 16 H 0.04 1.04 8.12 -51.93 -0.42 0.62 16 17 C -0.51 -14.69 8.50 -34.44 -0.29 -14.98 16 18 H 0.05 1.52 7.76 -52.48 -0.41 1.12 16 19 C 0.06 1.82 5.25 -17.82 -0.09 1.73 16 20 N -0.89 -26.37 12.01 55.43 0.67 -25.70 16 21 Si 0.89 22.11 29.54 -169.99 -5.02 17.08 16 22 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.05 1.11 3.80 -3.84 -0.01 1.10 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.35 7.18 -51.93 -0.37 -0.02 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.40 3.21 7.65 -40.82 -0.31 2.90 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 1.12 6.20 -51.93 -0.32 0.80 16 39 H 0.05 0.97 5.87 -51.92 -0.30 0.67 16 40 H 0.05 0.84 8.12 -51.93 -0.42 0.41 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.07 2.03 6.80 -51.93 -0.35 1.68 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.06 1.35 5.81 -51.93 -0.30 1.05 16 47 H 0.05 1.29 5.87 -51.93 -0.30 0.99 16 LS Contribution 356.47 15.07 5.37 5.37 Total: -1.00 -32.30 356.47 -9.37 -41.68 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -8.58 Total: 1.15 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -0.48 Total: -9.78 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -0.74 Total: -45.03 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.07 Total: -10.47 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.30 -9.37 -41.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397688531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.243 kcal (2) G-P(sol) polarization free energy of solvation -32.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds