Wall clock time and date at job start Tue Mar 31 2020 05:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46995 * 2 1 4 4 C 1.52998 * 109.46836 * 120.00165 * 2 1 3 5 5 N 1.46497 * 109.47089 * 64.99606 * 4 2 1 6 6 C 1.34779 * 119.99526 * 179.97438 * 5 4 2 7 7 O 1.21282 * 120.00598 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.99949 * 180.02562 * 6 5 4 9 9 H 1.09000 * 109.46644 * 300.00092 * 8 6 5 10 10 C 1.53000 * 109.46659 * 59.99933 * 8 6 5 11 11 N 1.46900 * 109.47057 * 180.02562 * 8 6 5 12 12 C 1.46846 * 111.00114 * 298.95526 * 11 8 6 13 13 C 1.53036 * 109.52349 * 185.84585 * 12 11 8 14 14 C 1.53125 * 109.27165 * 300.81535 * 13 12 11 15 15 C 1.53117 * 109.16196 * 57.66168 * 14 13 12 16 16 H 1.08993 * 109.50670 * 62.31934 * 15 14 13 17 17 C 1.50699 * 109.50510 * 182.40366 * 15 14 13 18 18 H 1.08002 * 120.00516 * 119.99140 * 17 15 14 19 19 C 1.37884 * 119.99783 * 299.99440 * 17 15 14 20 20 N 1.31514 * 119.99707 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 119.99956 * 180.27458 * 19 17 15 22 22 H 1.48497 * 109.47172 * 179.72730 * 21 19 17 23 23 H 1.48506 * 109.47132 * 299.72429 * 21 19 17 24 24 H 1.48501 * 109.47173 * 59.72550 * 21 19 17 25 25 C 1.46847 * 110.99851 * 63.16558 * 11 8 6 26 26 H 1.08991 * 109.47321 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46804 * 300.00403 * 1 2 3 28 28 H 1.09009 * 109.46698 * 59.99946 * 1 2 3 29 29 H 1.09001 * 109.46804 * 239.99597 * 2 1 3 30 30 H 1.09002 * 109.46774 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47247 * 299.99220 * 3 2 1 32 32 H 1.09001 * 109.47674 * 60.00130 * 3 2 1 33 33 H 1.09001 * 109.46891 * 304.99366 * 4 2 1 34 34 H 1.09003 * 109.46774 * 185.00174 * 4 2 1 35 35 H 0.96989 * 120.00563 * 0.02562 * 5 4 2 36 36 H 1.09007 * 109.46666 * 180.02562 * 10 8 6 37 37 H 1.08996 * 109.47568 * 299.99745 * 10 8 6 38 38 H 1.09000 * 109.47462 * 60.00661 * 10 8 6 39 39 H 1.08996 * 109.46232 * 65.81973 * 12 11 8 40 40 H 1.09002 * 109.45872 * 305.85295 * 12 11 8 41 41 H 1.08993 * 109.50439 * 180.88183 * 13 12 11 42 42 H 1.08996 * 109.50403 * 60.75389 * 13 12 11 43 43 H 1.08993 * 109.52792 * 297.74908 * 14 13 12 44 44 H 1.09008 * 109.52063 * 177.55981 * 14 13 12 45 45 H 0.97005 * 119.99656 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.46552 * 54.14403 * 25 11 8 47 47 H 1.09000 * 109.46059 * 294.16829 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6523 -2.1328 1.1905 6 6 1.9963 -2.9682 2.1907 7 8 2.6263 -2.5513 3.1395 8 6 1.5980 -4.4204 2.1302 9 1 0.5117 -4.4976 2.0844 10 6 2.2081 -5.0649 0.8838 11 7 2.0876 -5.1128 3.3297 12 6 3.5524 -5.0507 3.4123 13 6 4.0349 -5.9020 4.5889 14 6 3.4093 -5.3757 5.8836 15 6 1.8840 -5.4058 5.7532 16 1 1.5504 -6.4347 5.6184 17 6 1.2609 -4.8342 7.0006 18 1 0.6258 -3.9631 6.9367 19 6 1.5018 -5.4235 8.2237 20 7 2.2756 -6.4840 8.3016 21 14 0.7234 -4.7197 9.7690 22 1 1.1310 -5.5326 10.9430 23 1 1.1757 -3.3177 9.9567 24 1 -0.7554 -4.7492 9.6359 25 6 1.4638 -4.5689 4.5427 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6767 1.9564 0.8900 33 1 1.6054 -0.2617 2.1369 34 1 3.1263 -0.6443 1.2951 35 1 1.1488 -2.4664 0.4316 36 1 1.9197 -6.1152 0.8398 37 1 1.8445 -4.5511 -0.0060 38 1 3.2944 -4.9878 0.9296 39 1 3.8643 -4.0168 3.5599 40 1 3.9847 -5.4317 2.4870 41 1 5.1209 -5.8431 4.6594 42 1 3.7352 -6.9386 4.4350 43 1 3.7398 -4.3519 6.0580 44 1 3.7159 -6.0057 6.7187 45 1 2.4454 -6.8984 9.1621 46 1 0.3792 -4.5999 4.4386 47 1 1.7856 -3.5372 4.6852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397688532.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:35 Heat of formation + Delta-G solvation = -72.805271 kcal Electronic energy + Delta-G solvation = -23600.272776 eV Core-core repulsion = 20395.281588 eV Total energy + Delta-G solvation = -3204.991189 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.57445 -39.18793 -37.52411 -35.85461 -34.54991 -33.71676 -31.80689 -30.61054 -28.06432 -27.46061 -26.84299 -25.36356 -23.65850 -22.91862 -21.54827 -20.81896 -20.38071 -18.48629 -17.88791 -17.41530 -16.73393 -16.55906 -16.32511 -15.71240 -15.51026 -15.27054 -14.91993 -14.49297 -14.41573 -14.20749 -13.98364 -13.72941 -13.37334 -13.29164 -13.09302 -12.95473 -12.92865 -12.80668 -12.70518 -12.45173 -12.06172 -12.03745 -11.88087 -11.70236 -11.66963 -11.57557 -11.37969 -11.21897 -10.83548 -10.66530 -10.37450 -10.03098 -8.95720 -8.08020 -6.22033 1.38479 1.41111 1.48656 1.63239 2.25283 2.42043 3.05046 3.17911 3.76540 3.86229 3.93815 4.05979 4.11651 4.17364 4.23318 4.40474 4.52269 4.58091 4.65170 4.71400 4.76213 4.77694 4.82494 4.85270 4.91714 4.97801 5.02441 5.04219 5.06744 5.16426 5.20086 5.21264 5.31657 5.37970 5.40385 5.43378 5.51602 5.55992 5.63315 5.97010 6.10184 6.18961 6.24717 6.46551 6.60817 6.89204 7.31453 7.44819 8.96576 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019588 B = 0.004221 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.124616 B = 6632.184184 C = 7480.862242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.146 4.146 4 C 0.121 3.879 5 N -0.713 5.713 6 C 0.479 3.521 7 O -0.574 6.574 8 C 0.057 3.943 9 H 0.118 0.882 10 C -0.132 4.132 11 N -0.513 5.513 12 C 0.051 3.949 13 C -0.109 4.109 14 C -0.100 4.100 15 C 0.057 3.943 16 H -0.001 1.001 17 C -0.538 4.538 18 H 0.044 0.956 19 C 0.014 3.986 20 N -0.914 5.914 21 Si 0.955 3.045 22 H -0.279 1.279 23 H -0.276 1.276 24 H -0.268 1.268 25 C 0.072 3.928 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.414 0.586 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.055 0.945 39 H 0.038 0.962 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.008 0.992 44 H 0.058 0.942 45 H 0.261 0.739 46 H 0.049 0.951 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.722 9.625 -22.519 24.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.204 4.204 4 C -0.003 4.003 5 N -0.367 5.367 6 C 0.265 3.735 7 O -0.454 6.454 8 C -0.055 4.055 9 H 0.136 0.864 10 C -0.189 4.189 11 N -0.236 5.236 12 C -0.076 4.076 13 C -0.147 4.147 14 C -0.138 4.138 15 C 0.038 3.962 16 H 0.017 0.983 17 C -0.577 4.577 18 H 0.062 0.938 19 C -0.185 4.185 20 N -0.554 5.554 21 Si 0.780 3.220 22 H -0.204 1.204 23 H -0.202 1.202 24 H -0.193 1.193 25 C -0.056 4.056 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.252 0.748 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.027 0.973 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -1.342 9.292 -21.755 23.694 hybrid contribution -0.265 1.058 1.319 1.711 sum -1.607 10.349 -20.436 22.963 Atomic orbital electron populations 1.21883 0.94145 1.02333 1.02279 1.21303 0.96772 0.96894 0.96548 1.21781 1.01240 0.94745 1.02605 1.21427 0.99160 0.80853 0.98835 1.46081 1.57566 1.09391 1.23681 1.22586 0.78715 0.90362 0.81828 1.90685 1.41499 1.78669 1.34511 1.22177 1.02584 0.86917 0.93847 0.86423 1.21833 1.00837 1.02473 0.93767 1.62420 1.06930 1.52439 1.01773 1.22245 0.87731 0.99026 0.98601 1.21568 0.98933 0.99241 0.94938 1.21411 0.97918 0.97422 0.97056 1.18532 0.92558 0.93923 0.91163 0.98253 1.21476 1.29663 1.13078 0.93477 0.93759 1.25727 0.95659 0.95235 1.01845 1.70029 1.38090 1.21738 1.25513 0.85670 0.79154 0.78263 0.78907 1.20420 1.20178 1.19348 1.22088 0.96627 0.97040 0.89803 0.92148 0.93641 0.90841 0.88877 0.92483 0.90606 0.93125 0.93933 0.93000 0.74779 0.89956 0.88661 0.92594 0.94356 0.89320 0.91840 0.92603 0.97267 0.92328 0.92988 0.93270 0.95281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.07 71.98 0.65 -1.07 16 2 C -0.10 -1.21 2.96 -10.79 -0.03 -1.24 16 3 C -0.15 -1.73 9.19 71.98 0.66 -1.06 16 4 C 0.12 2.49 5.06 86.38 0.44 2.93 16 5 N -0.71 -14.62 5.18 -463.05 -2.40 -17.02 16 6 C 0.48 14.41 6.57 87.66 0.58 14.99 16 7 O -0.57 -23.71 11.61 -3.04 -0.04 -23.74 16 8 C 0.06 1.58 2.80 44.17 0.12 1.71 16 9 H 0.12 2.89 8.11 -2.39 -0.02 2.87 16 10 C -0.13 -2.47 8.84 71.98 0.64 -1.83 16 11 N -0.51 -19.60 4.66 -875.50 -4.08 -23.68 16 12 C 0.05 1.96 4.76 86.33 0.41 2.37 16 13 C -0.11 -4.68 6.09 30.65 0.19 -4.49 16 14 C -0.10 -5.34 5.02 30.67 0.15 -5.19 16 15 C 0.06 3.17 2.27 -11.49 -0.03 3.14 16 16 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 17 C -0.54 -32.39 8.56 25.60 0.22 -32.17 16 18 H 0.04 2.65 7.74 -2.91 -0.02 2.62 16 19 C 0.01 0.83 5.30 84.66 0.45 1.28 16 20 N -0.91 -55.73 11.35 21.45 0.24 -55.49 16 21 Si 0.95 46.21 29.54 68.60 2.03 48.24 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 24 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 25 C 0.07 3.42 4.28 86.33 0.37 3.79 16 26 H 0.06 0.64 7.18 -2.39 -0.02 0.63 16 27 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.41 5.37 7.07 -92.72 -0.66 4.71 16 36 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.09 1.06 7.56 -2.39 -0.02 1.05 16 38 H 0.06 1.14 6.26 -2.39 -0.01 1.13 16 39 H 0.04 1.66 5.59 -2.39 -0.01 1.65 16 40 H 0.09 2.78 5.98 -2.39 -0.01 2.76 16 41 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 44 H 0.06 3.45 6.15 -2.38 -0.01 3.43 16 45 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 46 H 0.05 2.27 8.10 -2.39 -0.02 2.25 16 47 H 0.03 1.52 5.76 -2.39 -0.01 1.51 16 Total: -1.00 -74.09 354.09 0.85 -73.23 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.27 Total: 15.31 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 4.82 Total: -16.85 kcal Atomic # 7 Polarization: -89.95 SS G_CDS: -6.23 Total: -96.18 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.04 Total: -23.74 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -74.09 0.85 -73.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397688532.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.430 kcal (2) G-P(sol) polarization free energy of solvation -74.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds