Wall clock time and date at job start Tue Mar 31 2020 05:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47229 * 2 1 4 4 C 1.52996 * 109.46996 * 119.99903 * 2 1 3 5 5 N 1.46503 * 109.47077 * 64.99964 * 4 2 1 6 6 C 1.34781 * 120.00161 * 179.97438 * 5 4 2 7 7 O 1.21282 * 119.99746 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.00039 * 180.02562 * 6 5 4 9 9 H 1.08997 * 109.47231 * 53.58290 * 8 6 5 10 10 C 1.53002 * 109.47370 * 293.57933 * 8 6 5 11 11 N 1.46904 * 109.47074 * 173.58066 * 8 6 5 12 12 C 1.46850 * 110.99992 * 195.44062 * 11 8 6 13 13 C 1.53042 * 109.52044 * 174.15908 * 12 11 8 14 14 C 1.53117 * 109.27647 * 59.17928 * 13 12 11 15 15 C 1.53120 * 109.16145 * 302.34298 * 14 13 12 16 16 H 1.09004 * 109.53557 * 297.69352 * 15 14 13 17 17 C 1.50700 * 109.50157 * 177.59754 * 15 14 13 18 18 H 1.08001 * 120.00173 * 245.48722 * 17 15 14 19 19 C 1.37877 * 119.99891 * 65.48259 * 17 15 14 20 20 N 1.31511 * 120.00337 * 355.37748 * 19 17 15 21 21 Si 1.86801 * 119.99790 * 175.37232 * 19 17 15 22 22 H 1.48499 * 109.47328 * 95.00459 * 21 19 17 23 23 H 1.48507 * 109.47396 * 215.00259 * 21 19 17 24 24 H 1.48502 * 109.47286 * 335.00164 * 21 19 17 25 25 C 1.46840 * 111.00049 * 71.22816 * 11 8 6 26 26 H 1.09007 * 109.47150 * 60.00289 * 1 2 3 27 27 H 1.08999 * 109.47497 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47625 * 300.00293 * 1 2 3 29 29 H 1.09000 * 109.46996 * 239.99956 * 2 1 3 30 30 H 1.08998 * 109.47031 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46919 * 300.00202 * 3 2 1 32 32 H 1.09002 * 109.46854 * 59.99625 * 3 2 1 33 33 H 1.08999 * 109.47509 * 304.99912 * 4 2 1 34 34 H 1.09005 * 109.47171 * 184.99490 * 4 2 1 35 35 H 0.97002 * 120.00217 * 0.02562 * 5 4 2 36 36 H 1.08995 * 109.46687 * 59.99924 * 10 8 6 37 37 H 1.08993 * 109.47047 * 179.97438 * 10 8 6 38 38 H 1.08995 * 109.46717 * 300.00376 * 10 8 6 39 39 H 1.09000 * 109.46109 * 294.17451 * 12 11 8 40 40 H 1.09001 * 109.46105 * 54.14181 * 12 11 8 41 41 H 1.08998 * 109.50276 * 299.23423 * 13 12 11 42 42 H 1.09002 * 109.52902 * 179.14027 * 13 12 11 43 43 H 1.09006 * 109.52054 * 182.43450 * 14 13 12 44 44 H 1.09000 * 109.52242 * 62.24987 * 14 13 12 45 45 H 0.96994 * 120.00045 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.46776 * 305.85719 * 25 11 8 47 47 H 1.08999 * 109.46142 * 65.82611 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.6523 -2.1328 1.1906 6 6 1.9963 -2.9683 2.1907 7 8 2.6263 -2.5513 3.1395 8 6 1.5981 -4.4204 2.1301 9 1 1.9358 -4.8507 1.1873 10 6 0.0756 -4.5363 2.2272 11 7 2.2166 -5.1449 3.2484 12 6 2.1628 -6.5959 3.0294 13 6 2.9412 -7.3095 4.1372 14 6 2.3272 -6.9561 5.4946 15 6 2.3515 -5.4360 5.6768 16 1 3.3837 -5.0856 5.6788 17 6 1.6954 -5.0756 6.9847 18 1 0.7745 -4.5113 6.9895 19 6 2.2707 -5.4661 8.1753 20 7 3.3413 -6.2298 8.1690 21 14 1.5295 -4.9104 9.7974 22 1 0.6100 -5.9593 10.3067 23 1 2.6147 -4.6815 10.7850 24 1 0.7746 -3.6485 9.5902 25 6 1.5902 -4.7768 4.5245 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6054 -0.2617 2.1370 34 1 3.1263 -0.6444 1.2951 35 1 1.1488 -2.4664 0.4316 36 1 -0.3833 -3.9987 1.3974 37 1 -0.2124 -5.5865 2.1828 38 1 -0.2621 -4.1059 3.1699 39 1 1.1244 -6.9271 3.0440 40 1 2.6062 -6.8340 2.0626 41 1 3.9828 -6.9891 4.1143 42 1 2.8885 -8.3873 3.9833 43 1 2.9050 -7.4277 6.2896 44 1 1.2973 -7.3111 5.5320 45 1 3.7462 -6.5043 9.0065 46 1 1.6178 -3.6937 4.6437 47 1 0.5546 -5.1165 4.5320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397688533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:38 Heat of formation + Delta-G solvation = -53.186231 kcal Electronic energy + Delta-G solvation = -23423.553127 eV Core-core repulsion = 20219.412684 eV Total energy + Delta-G solvation = -3204.140443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.95824 -38.01870 -36.54835 -34.14715 -33.19063 -32.13184 -29.75742 -29.04013 -27.48305 -26.45731 -24.85948 -24.45555 -21.98450 -21.25604 -20.68193 -19.65454 -18.27189 -16.81597 -16.43933 -16.03493 -15.51696 -14.86120 -14.73966 -14.24077 -14.16320 -14.02500 -13.57789 -13.35997 -13.18901 -12.85648 -12.62692 -12.45551 -12.25156 -12.23253 -12.03380 -11.60508 -11.51718 -11.40206 -11.28048 -11.09904 -10.98507 -10.85952 -10.57077 -10.54706 -10.00801 -9.75793 -9.49171 -9.27787 -8.95883 -8.80104 -8.55678 -8.18419 -7.54439 -5.87155 -3.91053 2.99518 3.23570 3.37519 3.44462 3.49047 4.46263 4.49788 4.59791 4.62782 4.74651 4.95663 5.20953 5.24991 5.26526 5.33202 5.43691 5.43982 5.53446 5.59410 5.66770 5.69905 5.71501 5.79419 5.83118 5.91510 5.97752 6.04653 6.07599 6.22318 6.33331 6.50708 6.54987 6.71854 6.77892 6.84282 7.16124 7.31701 7.44768 7.62590 7.74675 7.86707 7.91421 8.23116 8.28945 8.57589 8.61462 9.13569 9.72073 11.20098 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018949 B = 0.004153 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.330038 B = 6739.882757 C = 7633.756434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.145 4.145 4 C 0.125 3.875 5 N -0.739 5.739 6 C 0.515 3.485 7 O -0.504 6.504 8 C 0.065 3.935 9 H 0.095 0.905 10 C -0.180 4.180 11 N -0.516 5.516 12 C 0.064 3.936 13 C -0.117 4.117 14 C -0.109 4.109 15 C 0.057 3.943 16 H 0.037 0.963 17 C -0.510 4.510 18 H 0.051 0.949 19 C 0.062 3.938 20 N -0.889 5.889 21 Si 0.888 3.112 22 H -0.283 1.283 23 H -0.286 1.286 24 H -0.275 1.275 25 C 0.066 3.934 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.395 0.605 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.025 0.975 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.046 0.954 43 H 0.085 0.915 44 H 0.029 0.971 45 H 0.258 0.742 46 H 0.074 0.926 47 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.584 7.515 -19.431 21.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.126 4.126 3 C -0.203 4.203 4 C 0.001 3.999 5 N -0.394 5.394 6 C 0.301 3.699 7 O -0.376 6.376 8 C -0.048 4.048 9 H 0.113 0.887 10 C -0.239 4.239 11 N -0.240 5.240 12 C -0.064 4.064 13 C -0.155 4.155 14 C -0.147 4.147 15 C 0.038 3.962 16 H 0.055 0.945 17 C -0.549 4.549 18 H 0.070 0.930 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.716 3.284 22 H -0.210 1.210 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.061 4.061 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.228 0.772 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.104 0.896 44 H 0.048 0.952 45 H 0.068 0.932 46 H 0.093 0.907 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -4.471 7.874 -18.540 20.633 hybrid contribution -1.509 -0.143 0.435 1.577 sum -5.980 7.732 -18.105 20.575 Atomic orbital electron populations 1.21869 0.94780 1.01931 1.02029 1.21349 0.96391 0.96899 0.97999 1.21765 1.01323 0.95071 1.02150 1.21358 1.00030 0.80799 0.97728 1.46038 1.59515 1.09560 1.24326 1.20662 0.79259 0.87908 0.82109 1.90752 1.37445 1.77248 1.32167 1.21572 0.93562 0.92118 0.97551 0.88746 1.22389 0.95749 1.02839 1.02945 1.61931 1.55299 1.05215 1.01582 1.22064 0.98227 0.87482 0.98632 1.21669 1.00130 0.97120 0.96547 1.21665 0.98360 1.00403 0.94296 1.18642 0.96548 0.90722 0.90314 0.94483 1.21138 1.08668 1.34285 0.90765 0.93032 1.24925 0.95039 0.95049 0.98836 1.69917 1.21221 1.35327 1.26312 0.86651 0.78770 0.79004 0.83975 1.20971 1.21226 1.19958 1.22445 0.94887 1.01105 0.87640 0.92578 0.92596 0.92328 0.90690 0.92305 0.92331 0.92260 0.91610 0.91649 0.77156 0.92468 0.91538 0.91105 0.95669 0.92519 0.92013 0.93498 0.89639 0.95225 0.93203 0.90732 0.96490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.07 37.16 0.34 -0.69 16 2 C -0.11 -0.80 2.96 -90.62 -0.27 -1.07 16 3 C -0.15 -0.99 9.19 37.16 0.34 -0.65 16 4 C 0.12 1.35 5.06 -4.04 -0.02 1.33 16 5 N -0.74 -8.47 5.26 -60.29 -0.32 -8.79 16 6 C 0.52 8.32 6.89 -10.99 -0.08 8.24 16 7 O -0.50 -10.81 14.50 5.56 0.08 -10.73 16 8 C 0.06 0.97 2.70 -68.86 -0.19 0.79 16 9 H 0.09 1.17 7.88 -51.93 -0.41 0.76 16 10 C -0.18 -2.34 8.31 37.16 0.31 -2.03 16 11 N -0.52 -10.03 4.29 -228.08 -0.98 -11.01 16 12 C 0.06 1.12 5.21 -3.83 -0.02 1.10 16 13 C -0.12 -2.34 6.09 -26.65 -0.16 -2.51 16 14 C -0.11 -2.67 5.08 -26.61 -0.14 -2.80 16 15 C 0.06 1.51 2.20 -91.69 -0.20 1.31 16 16 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 17 C -0.51 -14.73 8.49 -34.44 -0.29 -15.03 16 18 H 0.05 1.48 7.75 -52.49 -0.41 1.07 16 19 C 0.06 1.81 5.36 -17.82 -0.10 1.71 16 20 N -0.89 -26.43 11.58 55.43 0.64 -25.79 16 21 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.07 1.50 3.42 -3.84 -0.01 1.49 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.37 7.18 -51.93 -0.37 0.00 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.39 3.29 7.55 -40.82 -0.31 2.98 16 36 H 0.06 0.56 8.04 -51.93 -0.42 0.14 16 37 H 0.07 0.84 7.04 -51.93 -0.37 0.47 16 38 H 0.07 1.09 6.44 -51.93 -0.33 0.75 16 39 H 0.03 0.43 7.08 -51.93 -0.37 0.06 16 40 H 0.06 0.85 7.96 -51.93 -0.41 0.44 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.09 2.33 6.41 -51.93 -0.33 2.00 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.07 1.85 6.07 -51.93 -0.32 1.54 16 47 H 0.02 0.38 6.58 -51.93 -0.34 0.04 16 LS Contribution 358.55 15.07 5.40 5.40 Total: -1.00 -32.82 358.55 -9.27 -42.09 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -8.59 Total: 0.53 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -0.48 Total: -8.81 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -0.65 Total: -45.59 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.82 -9.27 -42.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397688533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.098 kcal (2) G-P(sol) polarization free energy of solvation -32.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds