Wall clock time and date at job start Tue Mar 31 2020 05:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47040 * 2 1 4 4 C 1.52993 * 109.46939 * 119.99938 * 2 1 3 5 5 N 1.46498 * 109.47616 * 65.00023 * 4 2 1 6 6 C 1.34776 * 120.00485 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99847 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00202 * 180.02562 * 6 5 4 9 9 H 1.09000 * 109.47087 * 33.20199 * 8 6 5 10 10 C 1.52992 * 109.47248 * 273.20202 * 8 6 5 11 11 N 1.46898 * 109.47335 * 153.19786 * 8 6 5 12 12 C 1.46843 * 111.00120 * 172.96353 * 11 8 6 13 13 C 1.53044 * 109.52412 * 185.84243 * 12 11 8 14 14 C 1.53120 * 109.27730 * 300.82306 * 13 12 11 15 15 C 1.53114 * 109.16394 * 57.65082 * 14 13 12 16 16 H 1.09005 * 109.53195 * 62.30485 * 15 14 13 17 17 C 1.50698 * 109.50662 * 182.40640 * 15 14 13 18 18 H 1.07999 * 120.00355 * 119.52707 * 17 15 14 19 19 C 1.37881 * 119.99796 * 299.80347 * 17 15 14 20 20 N 1.31508 * 120.00122 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99902 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47394 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47190 * 120.00315 * 21 19 17 24 24 H 1.48507 * 109.47034 * 240.00395 * 21 19 17 25 25 C 1.46843 * 111.00219 * 297.17844 * 11 8 6 26 26 H 1.09002 * 109.47555 * 299.99972 * 1 2 3 27 27 H 1.09006 * 109.47380 * 60.00154 * 1 2 3 28 28 H 1.09004 * 109.47312 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47063 * 240.00102 * 2 1 3 30 30 H 1.09000 * 109.47333 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46908 * 300.00135 * 3 2 1 32 32 H 1.08996 * 109.47242 * 59.99375 * 3 2 1 33 33 H 1.09001 * 109.47329 * 304.99656 * 4 2 1 34 34 H 1.09002 * 109.47117 * 185.00063 * 4 2 1 35 35 H 0.97002 * 119.99739 * 0.02562 * 5 4 2 36 36 H 1.09001 * 109.47335 * 59.99945 * 10 8 6 37 37 H 1.09006 * 109.47403 * 180.02562 * 10 8 6 38 38 H 1.09000 * 109.47075 * 300.00005 * 10 8 6 39 39 H 1.08996 * 109.46493 * 305.85536 * 12 11 8 40 40 H 1.08997 * 109.46420 * 65.82697 * 12 11 8 41 41 H 1.08995 * 109.50274 * 60.75807 * 13 12 11 42 42 H 1.09003 * 109.50736 * 180.88300 * 13 12 11 43 43 H 1.09007 * 109.52274 * 297.74719 * 14 13 12 44 44 H 1.08998 * 109.52716 * 177.55916 * 14 13 12 45 45 H 0.97001 * 120.00160 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.46767 * 54.14133 * 25 11 8 47 47 H 1.09003 * 109.45389 * 294.16724 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.6524 -2.1328 1.1906 6 6 1.9964 -2.9682 2.1908 7 8 2.6272 -2.5514 3.1391 8 6 1.5982 -4.4203 2.1302 9 1 1.5985 -4.7542 1.0926 10 6 0.1968 -4.5900 2.7201 11 7 2.5553 -5.2232 2.9030 12 6 2.1093 -6.6184 3.0063 13 6 3.0501 -7.3887 3.9357 14 6 4.4742 -7.3286 3.3762 15 6 4.8966 -5.8639 3.2330 16 1 4.9058 -5.3896 4.2144 17 6 6.2749 -5.7945 2.6276 18 1 6.4263 -5.2875 1.6861 19 6 7.3417 -6.3832 3.2730 20 7 7.1563 -7.0057 4.4165 21 14 9.0500 -6.2978 2.5222 22 1 8.9911 -5.5485 1.2414 23 1 9.9688 -5.6042 3.4602 24 1 9.5482 -7.6735 2.2678 25 6 3.9022 -5.1378 2.3241 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6054 -0.2617 2.1369 34 1 3.1263 -0.6443 1.2951 35 1 1.1489 -2.4664 0.4316 36 1 -0.5134 -3.9943 2.1466 37 1 -0.0910 -5.6404 2.6767 38 1 0.1966 -4.2561 3.7577 39 1 1.0970 -6.6472 3.4094 40 1 2.1195 -7.0772 2.0177 41 1 3.0299 -6.9389 4.9282 42 1 2.7279 -8.4281 3.9998 43 1 4.5029 -7.8131 2.4001 44 1 5.1551 -7.8391 4.0573 45 1 7.9068 -7.4201 4.8703 46 1 4.1921 -4.0911 2.2316 47 1 3.9039 -5.6036 1.3386 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397688534.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:41 Heat of formation + Delta-G solvation = -53.499182 kcal Electronic energy + Delta-G solvation = -23384.424717 eV Core-core repulsion = 20180.270703 eV Total energy + Delta-G solvation = -3204.154014 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.91613 -37.96568 -36.56554 -34.19390 -33.17119 -32.07043 -30.14647 -29.13528 -27.47513 -26.60705 -24.95606 -23.92638 -22.20902 -20.94106 -20.67733 -19.58759 -18.59467 -16.91427 -16.56771 -16.03116 -15.43975 -15.26315 -14.59184 -14.41718 -14.22209 -13.81648 -13.48913 -13.40199 -13.00269 -12.72754 -12.60291 -12.53268 -12.43873 -12.25345 -11.91390 -11.78240 -11.46311 -11.37148 -11.32796 -11.12607 -10.97178 -10.90143 -10.61872 -10.56675 -10.02397 -9.76680 -9.40439 -9.35344 -9.00267 -8.88694 -8.59824 -8.22654 -7.61174 -5.89777 -3.95134 2.95506 3.24486 3.34664 3.42286 3.46202 4.39084 4.50955 4.56976 4.61993 4.75774 4.93242 5.23503 5.27830 5.28764 5.33877 5.40291 5.45476 5.53575 5.56958 5.62980 5.71426 5.74435 5.82508 5.84967 5.88519 5.99496 6.05235 6.11188 6.17216 6.33895 6.43344 6.54003 6.61093 6.76124 6.81163 7.05782 7.28924 7.41798 7.59878 7.70731 7.82722 7.87237 8.20055 8.26298 8.54621 8.56757 9.08808 9.68310 11.16514 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016383 B = 0.004497 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.697436 B = 6224.559522 C = 7618.000452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.145 4.145 4 C 0.124 3.876 5 N -0.739 5.739 6 C 0.517 3.483 7 O -0.507 6.507 8 C 0.066 3.934 9 H 0.049 0.951 10 C -0.141 4.141 11 N -0.516 5.516 12 C 0.061 3.939 13 C -0.117 4.117 14 C -0.111 4.111 15 C 0.057 3.943 16 H 0.037 0.963 17 C -0.511 4.511 18 H 0.052 0.948 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.889 3.111 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.285 1.285 25 C 0.069 3.931 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.395 0.605 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.023 0.977 41 H 0.062 0.938 42 H 0.047 0.953 43 H 0.029 0.971 44 H 0.091 0.909 45 H 0.258 0.742 46 H 0.062 0.938 47 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.089 9.265 -9.050 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.203 4.203 4 C 0.001 3.999 5 N -0.394 5.394 6 C 0.302 3.698 7 O -0.379 6.379 8 C -0.046 4.046 9 H 0.067 0.933 10 C -0.199 4.199 11 N -0.241 5.241 12 C -0.067 4.067 13 C -0.155 4.155 14 C -0.149 4.149 15 C 0.038 3.962 16 H 0.055 0.945 17 C -0.550 4.550 18 H 0.070 0.930 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.717 3.283 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.211 1.211 25 C -0.058 4.058 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.229 0.771 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.041 0.959 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.048 0.952 44 H 0.109 0.891 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -15.486 9.675 -7.715 19.823 hybrid contribution 0.720 -0.467 -1.691 1.896 sum -14.765 9.209 -9.405 19.781 Atomic orbital electron populations 1.21866 0.94820 1.01862 1.01967 1.21353 0.96326 0.96957 0.98099 1.21761 1.01472 0.94990 1.02070 1.21368 1.00251 0.80664 0.97650 1.46066 1.59392 1.09708 1.24190 1.20589 0.79118 0.87906 0.82182 1.90739 1.37184 1.77307 1.32665 1.21512 0.94754 0.91397 0.96971 0.93308 1.21830 0.93218 1.02544 1.02276 1.61824 1.02049 1.09434 1.50824 1.22150 0.98538 0.87678 0.98318 1.21674 0.97436 0.97122 0.99229 1.21664 0.92983 1.00713 0.99531 1.18632 0.91109 0.91082 0.95367 0.94528 1.21173 0.92487 1.34591 1.06732 0.92983 1.24922 0.98701 0.95345 0.94875 1.69903 1.30755 1.36351 1.15715 0.86586 0.84843 0.77572 0.79265 1.19938 1.21032 1.21138 1.22352 0.86733 1.00696 0.96027 0.92417 0.92546 0.92626 0.90583 0.92203 0.92310 0.92330 0.91668 0.91487 0.77096 0.92407 0.91168 0.91057 0.91682 0.95920 0.91931 0.93425 0.95247 0.89086 0.93183 0.91960 0.96732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.07 37.16 0.34 -0.68 16 2 C -0.11 -0.87 2.96 -90.63 -0.27 -1.14 16 3 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 4 C 0.12 1.41 5.06 -4.05 -0.02 1.39 16 5 N -0.74 -8.97 5.28 -60.30 -0.32 -9.29 16 6 C 0.52 8.56 5.96 -10.99 -0.07 8.50 16 7 O -0.51 -10.89 15.75 5.56 0.09 -10.81 16 8 C 0.07 1.02 2.47 -68.87 -0.17 0.85 16 9 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 10 C -0.14 -1.73 8.72 37.15 0.32 -1.40 16 11 N -0.52 -10.12 4.22 -228.09 -0.96 -11.08 16 12 C 0.06 1.08 5.06 -3.83 -0.02 1.06 16 13 C -0.12 -2.34 6.09 -26.65 -0.16 -2.51 16 14 C -0.11 -2.71 5.03 -26.61 -0.13 -2.84 16 15 C 0.06 1.51 2.26 -91.69 -0.21 1.30 16 16 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 17 C -0.51 -14.67 8.56 -34.44 -0.29 -14.97 16 18 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 20 N -0.89 -26.16 11.36 55.43 0.63 -25.53 16 21 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.07 1.57 4.41 -3.83 -0.02 1.56 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.37 7.18 -51.93 -0.37 -0.01 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.40 3.62 7.66 -40.82 -0.31 3.31 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.78 6.19 -51.93 -0.32 0.46 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.98 5.85 -51.93 -0.30 0.67 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.03 0.71 8.14 -51.92 -0.42 0.28 16 44 H 0.09 2.48 6.16 -51.93 -0.32 2.16 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.06 1.52 6.46 -51.93 -0.34 1.19 16 47 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 361.60 15.07 5.45 5.45 Total: -1.00 -32.67 361.60 -9.28 -41.95 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -8.69 Total: 0.31 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -0.45 Total: -7.90 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -0.65 Total: -45.91 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.67 -9.28 -41.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397688534.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.546 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds