Wall clock time and date at job start Tue Mar 31 2020 05:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47451 * 2 1 4 4 C 1.50693 * 109.47310 * 120.00503 * 2 1 3 5 5 O 1.21286 * 120.00527 * 120.00218 * 4 2 1 6 6 N 1.34780 * 119.99690 * 299.99554 * 4 2 1 7 7 C 1.46503 * 119.99987 * 180.02562 * 6 4 2 8 8 C 1.53071 * 109.45178 * 84.78906 * 7 6 4 9 9 C 1.53201 * 109.29371 * 181.24494 * 8 7 6 10 10 N 1.46928 * 108.89275 * 305.57634 * 9 8 7 11 11 C 1.36934 * 120.63265 * 233.51651 * 10 9 8 12 12 H 1.07997 * 119.99862 * 151.82898 * 11 10 9 13 13 C 1.38806 * 120.00015 * 331.83027 * 11 10 9 14 14 N 1.31624 * 120.00191 * 343.08772 * 13 11 10 15 15 Si 1.86800 * 120.00146 * 163.08448 * 13 11 10 16 16 H 1.48503 * 109.47142 * 60.00161 * 15 13 11 17 17 H 1.48498 * 109.47084 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47267 * 300.00095 * 15 13 11 19 19 C 1.46932 * 118.73342 * 53.53882 * 10 9 8 20 20 C 1.53045 * 109.45960 * 205.00187 * 7 6 4 21 21 C 1.53004 * 109.46968 * 240.00224 * 2 1 3 22 22 C 1.53000 * 109.47027 * 299.99570 * 21 2 1 23 23 C 1.53005 * 109.47179 * 59.99837 * 21 2 1 24 24 C 1.52998 * 109.47303 * 179.97438 * 21 2 1 25 25 H 1.08997 * 109.47649 * 59.99843 * 1 2 3 26 26 H 1.09005 * 109.47082 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47254 * 299.99707 * 1 2 3 28 28 H 0.96995 * 120.00081 * 359.97438 * 6 4 2 29 29 H 1.09001 * 109.45637 * 324.97326 * 7 6 4 30 30 H 1.09002 * 109.39343 * 61.36736 * 8 7 6 31 31 H 1.09003 * 109.62467 * 301.25963 * 8 7 6 32 32 H 1.09000 * 109.58250 * 185.72113 * 9 8 7 33 33 H 1.08995 * 109.58477 * 65.43833 * 9 8 7 34 34 H 0.96995 * 120.00379 * 180.02562 * 14 13 11 35 35 H 1.08996 * 109.59017 * 66.18099 * 19 10 9 36 36 H 1.09009 * 109.58200 * 186.46074 * 19 10 9 37 37 H 1.09002 * 109.49555 * 58.66185 * 20 7 6 38 38 H 1.08999 * 109.49562 * 298.56688 * 20 7 6 39 39 H 1.09008 * 109.46683 * 60.00237 * 22 21 2 40 40 H 1.08999 * 109.46930 * 179.97438 * 22 21 2 41 41 H 1.08996 * 109.47621 * 300.00158 * 22 21 2 42 42 H 1.08999 * 109.46554 * 60.00057 * 23 21 2 43 43 H 1.08996 * 109.46921 * 180.02562 * 23 21 2 44 44 H 1.09004 * 109.47007 * 299.99821 * 23 21 2 45 45 H 1.09005 * 109.47154 * 59.99605 * 24 21 2 46 46 H 1.08996 * 109.47705 * 179.97438 * 24 21 2 47 47 H 1.09006 * 109.47001 * 300.00464 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 8 2.7297 -1.6966 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1956 -0.9403 3.6506 8 6 3.6008 -0.4376 3.9909 9 6 4.1208 -1.1840 5.2236 10 7 3.1454 -1.0406 6.3131 11 6 3.5331 -0.5698 7.5391 12 1 2.8256 -0.0458 8.1646 13 6 4.8352 -0.7661 7.9779 14 7 5.5968 -1.6685 7.3963 15 14 5.5070 0.2505 9.3938 16 1 4.6811 0.0177 10.6058 17 1 6.9111 -0.1483 9.6669 18 1 5.4630 1.6905 9.0339 19 6 1.7463 -1.4125 6.0620 20 6 1.2512 -0.6612 4.8222 21 6 2.0399 -0.7212 -1.2493 22 6 1.5300 -2.1637 -1.2493 23 6 1.5299 0.0001 -2.4986 24 6 3.5699 -0.7207 -1.2497 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.1495 0.5389 2.5435 29 1 2.2321 -2.0132 3.4613 30 1 3.5616 0.6310 4.2022 31 1 4.2682 -0.6180 3.1481 32 1 5.0768 -0.7602 5.5309 33 1 4.2490 -2.2396 4.9844 34 1 6.5066 -1.8059 7.7032 35 1 1.6789 -2.4866 5.8896 36 1 1.1360 -1.1417 6.9238 37 1 0.2467 -1.0000 4.5684 38 1 1.2335 0.4090 5.0281 39 1 0.4399 -2.1637 -1.2493 40 1 1.8929 -2.6774 -2.1395 41 1 1.8933 -2.6776 -0.3594 42 1 1.8933 1.0277 -2.4985 43 1 1.8928 -0.5140 -3.3885 44 1 0.4398 0.0000 -2.4985 45 1 3.9337 -1.2343 -0.3597 46 1 3.9333 -1.2349 -2.1394 47 1 3.9329 0.3071 -1.2498 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399063467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:40 Heat of formation + Delta-G solvation = -36.779664 kcal Electronic energy + Delta-G solvation = -23657.296717 eV Core-core repulsion = 20453.867716 eV Total energy + Delta-G solvation = -3203.429001 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.39779 -37.93696 -36.46523 -34.41661 -32.41196 -31.10816 -29.94501 -29.22456 -27.41660 -27.24280 -25.20690 -24.22803 -22.22968 -22.01650 -20.27588 -19.48452 -18.48936 -16.96123 -16.58613 -15.89709 -15.16041 -14.85871 -14.62935 -14.27122 -14.19483 -13.80183 -13.62844 -13.48700 -13.01207 -12.74744 -12.44488 -12.38245 -12.24801 -12.11915 -11.84843 -11.63093 -11.47749 -11.31785 -11.13822 -10.99415 -10.83081 -10.71205 -10.58829 -10.52409 -10.35097 -10.24077 -10.03200 -9.72923 -9.65909 -9.11585 -8.63275 -8.39334 -6.67263 -5.77538 -3.20876 2.86915 3.38281 3.43897 3.44937 3.45888 4.49032 4.50157 4.71627 4.72999 5.07213 5.17819 5.24159 5.28708 5.36777 5.44196 5.47856 5.55574 5.60361 5.65417 5.68204 5.68998 5.84294 5.85148 5.88364 5.89013 6.07820 6.09977 6.13857 6.23549 6.25538 6.35857 6.45312 6.52979 6.59275 6.66172 6.68976 6.79072 6.93736 7.00415 7.39153 7.68842 7.79992 7.80357 8.46042 8.52394 9.21977 9.85264 10.42173 11.30940 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033989 B = 0.003635 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.589080 B = 7700.645586 C = 8020.893783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 H 0.092 0.908 4 C 0.515 3.485 5 O -0.531 6.531 6 N -0.725 5.725 7 C 0.151 3.849 8 C -0.145 4.145 9 C 0.174 3.826 10 N -0.592 5.592 11 C -0.256 4.256 12 H 0.065 0.935 13 C 0.003 3.997 14 N -0.901 5.901 15 Si 0.903 3.097 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.284 1.284 19 C 0.149 3.851 20 C -0.138 4.138 21 C -0.045 4.045 22 C -0.155 4.155 23 C -0.143 4.143 24 C -0.155 4.155 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.393 0.607 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.020 0.980 34 H 0.255 0.745 35 H 0.019 0.981 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.086 0.914 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.087 0.913 46 H 0.048 0.952 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.465 4.635 -16.953 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 H 0.110 0.890 4 C 0.301 3.699 5 O -0.408 6.408 6 N -0.375 5.375 7 C 0.048 3.952 8 C -0.186 4.186 9 C 0.048 3.952 10 N -0.315 5.315 11 C -0.386 4.386 12 H 0.083 0.917 13 C -0.196 4.196 14 N -0.545 5.545 15 Si 0.733 3.267 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.211 1.211 19 C 0.021 3.979 20 C -0.178 4.178 21 C -0.046 4.046 22 C -0.212 4.212 23 C -0.200 4.200 24 C -0.212 4.212 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.226 0.774 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.104 0.896 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.105 0.895 46 H 0.068 0.932 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.778 3.855 -16.956 19.950 hybrid contribution 0.145 1.022 0.708 1.252 sum -9.633 4.877 -16.248 19.508 Atomic orbital electron populations 1.21889 0.93339 1.02899 1.02343 1.21387 0.97209 1.00459 0.93455 0.89000 1.20531 0.80148 0.84684 0.84533 1.90576 1.37635 1.26406 1.86221 1.46381 1.53240 1.31752 1.06114 1.21015 0.94454 0.97135 0.82639 1.22554 0.95105 1.00757 1.00155 1.20744 0.94162 0.96284 0.84051 1.44087 1.02832 1.75250 1.09347 1.19130 0.96123 1.28927 0.94385 0.91719 1.25062 0.98655 0.97533 0.98300 1.70026 1.08721 1.32207 1.43564 0.86370 0.77997 0.80193 0.82185 1.20881 1.21619 1.21056 1.20835 0.87656 0.95396 0.93979 1.22322 0.97220 1.01706 0.96579 1.20255 0.96195 0.95621 0.92520 1.22161 0.99978 0.95530 1.03510 1.21963 1.00911 1.00022 0.97150 1.22122 0.94113 1.01313 1.03638 0.91409 0.91721 0.92331 0.77387 0.90152 0.92844 0.92873 0.89367 0.96197 0.93525 0.96268 0.92407 0.92717 0.91954 0.93400 0.93373 0.89568 0.92864 0.92614 0.92502 0.89466 0.93244 0.93698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.38 37.16 0.31 -0.92 16 2 C -0.10 -1.08 2.10 -91.77 -0.19 -1.27 16 3 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 4 C 0.51 7.24 6.53 -10.99 -0.07 7.17 16 5 O -0.53 -9.29 11.01 5.55 0.06 -9.23 16 6 N -0.73 -9.96 4.97 -53.75 -0.27 -10.22 16 7 C 0.15 2.61 2.41 -67.87 -0.16 2.44 16 8 C -0.15 -2.91 5.66 -26.59 -0.15 -3.06 16 9 C 0.17 4.26 5.30 -3.71 -0.02 4.24 16 10 N -0.59 -14.86 3.00 -172.31 -0.52 -15.38 16 11 C -0.26 -7.02 9.58 -15.06 -0.14 -7.17 16 12 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 13 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 14 N -0.90 -26.43 11.20 55.49 0.62 -25.81 16 15 Si 0.90 21.70 29.59 -169.99 -5.03 16.67 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 19 C 0.15 3.07 6.52 -3.71 -0.02 3.04 16 20 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16 21 C -0.05 -0.48 0.54 -154.50 -0.08 -0.57 16 22 C -0.15 -1.77 7.82 37.16 0.29 -1.48 16 23 C -0.14 -1.20 8.12 37.16 0.30 -0.90 16 24 C -0.15 -1.86 8.18 37.16 0.30 -1.56 16 25 H 0.07 0.47 6.43 -51.93 -0.33 0.13 16 26 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 27 H 0.06 0.44 7.57 -51.93 -0.39 0.04 16 28 H 0.39 4.33 8.02 -40.82 -0.33 4.01 16 29 H 0.08 1.57 7.58 -51.93 -0.39 1.17 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.09 2.41 6.06 -51.93 -0.31 2.10 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 1.15 7.93 -51.92 -0.41 0.74 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.49 6.43 -51.92 -0.33 0.15 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 1.23 5.51 -51.93 -0.29 0.95 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 45 H 0.09 1.31 5.51 -51.93 -0.29 1.02 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 350.49 15.07 5.28 5.28 Total: -1.00 -30.37 350.49 -8.09 -38.47 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -8.37 Total: 2.67 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 0.12 Total: -2.46 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.16 Total: -51.41 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.06 Total: -9.23 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.37 -8.09 -38.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399063467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.686 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds