Wall clock time and date at job start Tue Mar 31 2020 05:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.26926 * 2 1 4 4 C 1.53991 * 110.30878 * 122.09118 * 2 1 3 5 5 H 1.09002 * 109.91707 * 239.59376 * 4 2 1 6 6 C 1.52999 * 109.91775 * 0.69041 * 4 2 1 7 7 N 1.47905 * 107.22505 * 120.14316 * 4 2 1 8 8 C 1.46897 * 111.00050 * 214.25344 * 7 4 2 9 9 C 1.53003 * 109.47175 * 169.99751 * 8 7 4 10 10 C 1.50703 * 109.47070 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00071 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99863 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99930 * 359.97438 * 12 10 9 14 14 C 1.46498 * 119.99718 * 180.02562 * 12 10 9 15 15 C 1.50702 * 109.47327 * 90.00147 * 14 12 10 16 16 H 1.07999 * 119.99735 * 359.97438 * 15 14 12 17 17 C 1.37874 * 120.00090 * 179.97438 * 15 14 12 18 18 N 1.31516 * 119.99950 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00029 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46945 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.46968 * 119.99667 * 19 17 15 22 22 H 1.48492 * 109.47235 * 239.99813 * 19 17 15 23 23 C 1.48813 * 105.67450 * 334.90354 * 7 4 2 24 24 C 1.54594 * 110.38975 * 237.85858 * 2 1 3 25 25 H 1.08999 * 110.72080 * 144.63834 * 24 2 1 26 26 C 1.53003 * 110.72619 * 21.53348 * 24 2 1 27 27 H 1.09002 * 109.47139 * 297.90369 * 1 2 3 28 28 H 1.08997 * 109.47376 * 57.91096 * 1 2 3 29 29 H 1.09004 * 109.47076 * 177.91316 * 1 2 3 30 30 H 1.09000 * 109.47313 * 59.60099 * 6 4 2 31 31 H 1.09008 * 109.47147 * 179.59391 * 6 4 2 32 32 H 1.08999 * 109.47412 * 299.59605 * 6 4 2 33 33 H 1.09000 * 109.47143 * 290.00333 * 8 7 4 34 34 H 1.09011 * 109.46966 * 49.99945 * 8 7 4 35 35 H 1.09000 * 109.46888 * 299.99991 * 9 8 7 36 36 H 1.08995 * 109.46911 * 59.99977 * 9 8 7 37 37 H 1.08999 * 109.46863 * 90.00202 * 13 12 10 38 38 H 1.09001 * 109.47061 * 209.99691 * 13 12 10 39 39 H 1.09002 * 109.47450 * 330.00263 * 13 12 10 40 40 H 1.09000 * 109.46885 * 209.99673 * 14 12 10 41 41 H 1.09000 * 109.47306 * 329.99711 * 14 12 10 42 42 H 0.97000 * 119.99623 * 180.02562 * 18 17 15 43 43 H 1.08998 * 110.51915 * 280.54171 * 23 7 4 44 44 H 1.09009 * 110.83927 * 157.56590 * 23 7 4 45 45 H 1.08994 * 109.46821 * 59.99534 * 26 24 2 46 46 H 1.08997 * 109.47247 * 180.02562 * 26 24 2 47 47 H 1.09006 * 109.46903 * 300.00020 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0645 -0.7673 1.2235 5 1 2.6798 -0.1078 1.8356 6 6 0.8965 -1.3069 2.0514 7 7 2.8819 -1.8897 0.7139 8 6 2.7644 -3.0653 1.5869 9 6 3.4131 -4.2725 0.9066 10 6 3.2932 -5.4784 1.8025 11 8 2.7427 -5.3819 2.8788 12 7 3.7977 -6.6641 1.4075 13 6 4.4622 -6.7808 0.1071 14 6 3.6806 -7.8364 2.2782 15 6 2.3980 -8.5651 1.9699 16 1 1.7360 -8.1919 1.2025 17 6 2.0696 -9.7080 2.6676 18 7 2.8760 -10.1627 3.6018 19 14 0.4794 -10.6108 2.2860 20 1 -0.2454 -9.9001 1.2021 21 1 0.7891 -11.9960 1.8495 22 1 -0.3699 -10.6536 3.5033 23 6 2.3620 -2.1787 -0.6502 24 6 2.0687 -0.7709 -1.2270 25 1 2.9823 -0.3096 -1.6017 26 6 1.0096 -0.8429 -2.3289 27 1 -0.3633 0.4809 0.9082 28 1 -0.3634 0.5459 -0.8706 29 1 -0.3633 -1.0270 -0.0374 30 1 0.2933 -1.9748 1.4365 31 1 1.2828 -1.8545 2.9111 32 1 0.2812 -0.4759 2.3965 33 1 3.2683 -2.8671 2.5329 34 1 1.7112 -3.2757 1.7732 35 1 2.9092 -4.4706 -0.0394 36 1 4.4662 -4.0621 0.7202 37 1 5.5259 -6.5732 0.2228 38 1 4.3292 -7.7912 -0.2795 39 1 4.0259 -6.0648 -0.5895 40 1 4.5267 -8.5020 2.1070 41 1 3.6753 -7.5162 3.3201 42 1 2.6451 -10.9670 4.0923 43 1 1.4477 -2.7693 -0.5934 44 1 3.1132 -2.6917 -1.2509 45 1 0.7383 0.1663 -2.6385 46 1 1.4099 -1.3900 -3.1824 47 1 0.1259 -1.3568 -1.9504 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399695396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:41 Heat of formation + Delta-G solvation = -34.978644 kcal Electronic energy + Delta-G solvation = -23292.327620 eV Core-core repulsion = 20088.976717 eV Total energy + Delta-G solvation = -3203.350903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.33464 -38.81945 -35.02889 -34.55172 -32.68857 -32.43606 -30.46413 -27.86279 -27.73836 -26.24792 -25.47629 -25.30139 -23.32133 -21.90506 -19.71936 -18.89621 -18.19990 -16.99983 -16.54102 -16.15099 -15.41059 -15.30985 -15.03507 -14.62722 -14.29439 -14.03963 -13.75455 -13.33608 -13.14863 -12.89137 -12.58860 -12.34010 -12.18483 -12.12496 -11.97591 -11.86931 -11.79887 -11.58029 -11.25626 -11.09994 -10.95751 -10.87896 -10.78263 -10.66379 -10.54371 -10.49502 -10.41377 -10.15252 -9.59698 -8.85205 -8.43258 -8.34467 -7.60797 -6.03644 -4.08340 3.29467 3.36616 3.40070 3.49459 3.77555 4.17855 4.38886 4.41308 4.46500 4.69533 4.98764 5.10822 5.16544 5.21026 5.24434 5.30067 5.30385 5.33997 5.38863 5.40016 5.48436 5.54297 5.58943 5.65019 5.68783 5.81212 5.83557 5.85693 5.92337 5.94553 5.99538 6.08832 6.13843 6.19706 6.23962 6.26114 6.32788 6.89467 7.06438 7.09471 7.46666 7.57121 7.93126 8.24863 8.45702 8.91721 9.13378 9.56827 11.04466 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022459 B = 0.003635 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.397660 B = 7701.952148 C = 7896.506354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 H 0.075 0.925 4 C 0.067 3.933 5 H 0.084 0.916 6 C -0.180 4.180 7 N -0.514 5.514 8 C 0.057 3.943 9 C -0.139 4.139 10 C 0.505 3.495 11 O -0.545 6.545 12 N -0.604 5.604 13 C 0.085 3.915 14 C 0.244 3.756 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.035 3.965 24 C -0.092 4.092 25 H 0.080 0.920 26 C -0.144 4.144 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.031 0.969 41 H 0.043 0.957 42 H 0.262 0.738 43 H 0.045 0.955 44 H 0.081 0.919 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.773 19.662 -11.269 22.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 H 0.094 0.906 4 C -0.041 4.041 5 H 0.102 0.898 6 C -0.238 4.238 7 N -0.237 5.237 8 C -0.071 4.071 9 C -0.179 4.179 10 C 0.291 3.709 11 O -0.423 6.423 12 N -0.336 5.336 13 C -0.060 4.060 14 C 0.125 3.875 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.092 4.092 24 C -0.111 4.111 25 H 0.099 0.901 26 C -0.202 4.202 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.099 0.901 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.471 19.660 -10.558 22.321 hybrid contribution -1.622 -0.974 -0.189 1.902 sum -2.093 18.686 -10.747 21.657 Atomic orbital electron populations 1.22033 0.94968 1.01951 1.01430 1.22036 0.95769 0.99321 0.94244 0.90633 1.22445 0.93029 0.93228 0.95423 0.89782 1.22536 0.98946 1.01518 1.00813 1.65058 1.50227 1.06267 1.02168 1.22124 1.00625 0.88105 0.96213 1.21714 1.03108 0.93674 0.99412 1.20300 0.79168 0.84164 0.87289 1.90658 1.43241 1.84896 1.23522 1.48155 1.55874 1.10667 1.18889 1.21624 0.96104 1.02773 0.85469 1.19282 0.96835 0.80914 0.90469 1.21476 1.05743 1.09049 1.20115 0.92502 1.24942 0.97129 0.97211 0.94884 1.69947 1.36868 1.23240 1.23338 0.86448 0.83412 0.79319 0.78277 1.19859 1.20932 1.20863 1.23350 0.98745 0.96360 0.90782 1.22080 0.98707 0.95602 0.94696 0.90124 1.21843 0.98777 1.01620 0.97962 0.92500 0.92631 0.92275 0.92266 0.91599 0.92020 0.89932 0.92654 0.89767 0.89050 0.93739 0.90878 0.92515 0.95051 0.93857 0.92782 0.93623 0.90078 0.92527 0.92700 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 6.75 37.16 0.25 -0.94 16 2 C -0.09 -0.84 3.52 -89.26 -0.31 -1.15 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 4 C 0.07 0.72 3.75 -66.64 -0.25 0.47 16 5 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 6 C -0.18 -2.01 6.64 37.16 0.25 -1.76 16 7 N -0.51 -6.30 5.39 -222.32 -1.20 -7.50 16 8 C 0.06 0.85 3.29 -3.82 -0.01 0.83 16 9 C -0.14 -2.12 3.92 -27.88 -0.11 -2.23 16 10 C 0.50 10.68 7.67 -10.99 -0.08 10.59 16 11 O -0.54 -13.89 15.56 5.56 0.09 -13.80 16 12 N -0.60 -13.09 2.86 -182.95 -0.52 -13.62 16 13 C 0.08 1.36 10.24 59.85 0.61 1.98 16 14 C 0.24 6.53 5.16 -5.19 -0.03 6.50 16 15 C -0.52 -15.13 9.39 -34.44 -0.32 -15.46 16 16 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -26.91 13.29 55.43 0.74 -26.18 16 19 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 C 0.04 0.38 4.56 -1.74 -0.01 0.37 16 24 C -0.09 -0.82 3.58 -88.76 -0.32 -1.13 16 25 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 26 C -0.14 -1.10 8.06 37.16 0.30 -0.80 16 27 H 0.06 0.44 6.78 -51.93 -0.35 0.09 16 28 H 0.05 0.40 6.99 -51.93 -0.36 0.03 16 29 H 0.06 0.54 5.98 -51.93 -0.31 0.23 16 30 H 0.06 0.70 6.23 -51.93 -0.32 0.38 16 31 H 0.07 0.84 6.74 -51.92 -0.35 0.49 16 32 H 0.06 0.59 6.76 -51.93 -0.35 0.23 16 33 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 34 H 0.06 0.89 5.61 -51.92 -0.29 0.60 16 35 H 0.08 1.16 6.07 -51.93 -0.32 0.85 16 36 H 0.09 1.25 8.11 -51.93 -0.42 0.83 16 37 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 39 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 40 H 0.03 0.84 8.07 -51.93 -0.42 0.43 16 41 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.05 0.53 7.89 -51.93 -0.41 0.12 16 44 H 0.08 0.83 7.69 -51.92 -0.40 0.43 16 45 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 46 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.48 6.58 -51.93 -0.34 0.13 16 LS Contribution 353.98 15.07 5.33 5.33 Total: -1.00 -32.64 353.98 -8.98 -41.63 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -8.26 Total: -1.84 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -0.13 Total: -1.08 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.99 Total: -47.29 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.09 Total: -13.80 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.64 -8.98 -41.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399695396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.647 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds