Wall clock time and date at job start Tue Mar 31 2020 05:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47174 * 2 1 4 4 C 1.53001 * 109.46895 * 120.00802 * 2 1 3 5 5 C 1.50698 * 109.46613 * 181.12807 * 4 2 1 6 6 H 1.08002 * 120.00353 * 356.88647 * 5 4 2 7 7 C 1.37886 * 119.99808 * 176.88722 * 5 4 2 8 8 N 1.31516 * 119.99837 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99835 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47203 * 60.00269 * 9 7 5 11 11 H 1.48502 * 109.46847 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47337 * 300.00100 * 9 7 5 13 13 N 1.46901 * 109.46450 * 240.00335 * 2 1 3 14 14 C 1.46905 * 110.99887 * 80.93616 * 13 2 1 15 15 H 1.08995 * 109.47173 * 334.38146 * 14 13 2 16 16 C 1.53004 * 109.46897 * 214.38354 * 14 13 2 17 17 C 1.50696 * 109.47076 * 65.64590 * 16 14 13 18 18 N 1.34775 * 119.99852 * 185.95277 * 17 16 14 19 19 O 1.21283 * 120.00198 * 5.95838 * 17 16 14 20 20 C 1.52998 * 109.47029 * 94.38482 * 14 13 2 21 21 C 1.52996 * 109.47179 * 295.51500 * 20 14 13 22 22 C 1.53001 * 109.47215 * 180.02562 * 21 20 14 23 23 C 1.53000 * 109.47524 * 60.00015 * 22 21 20 24 24 C 1.53006 * 109.46908 * 300.00240 * 23 22 21 25 25 C 1.53001 * 109.47224 * 59.99576 * 24 23 22 26 26 H 1.09000 * 109.46987 * 293.88013 * 1 2 3 27 27 H 1.08996 * 109.47338 * 53.87625 * 1 2 3 28 28 H 1.09003 * 109.47248 * 173.87712 * 1 2 3 29 29 H 1.08994 * 109.47391 * 61.12834 * 4 2 1 30 30 H 1.08996 * 109.46860 * 301.12322 * 4 2 1 31 31 H 0.96997 * 119.99769 * 179.97438 * 8 7 5 32 32 H 1.00893 * 111.00449 * 316.97318 * 13 2 1 33 33 H 1.08999 * 109.46971 * 185.64923 * 16 14 13 34 34 H 1.09004 * 109.47026 * 305.64875 * 16 14 13 35 35 H 0.96996 * 120.00488 * 0.02562 * 18 17 16 36 36 H 0.97004 * 119.99745 * 180.02562 * 18 17 16 37 37 H 1.09000 * 109.47717 * 55.51854 * 20 14 13 38 38 H 1.09000 * 109.47109 * 300.00185 * 21 20 14 39 39 H 1.08995 * 109.47663 * 60.00230 * 21 20 14 40 40 H 1.08998 * 109.47021 * 299.99349 * 22 21 20 41 41 H 1.09002 * 109.47306 * 179.97438 * 22 21 20 42 42 H 1.08995 * 109.47310 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.46790 * 59.99794 * 23 22 21 44 44 H 1.09000 * 109.47055 * 299.99962 * 24 23 22 45 45 H 1.08991 * 109.47241 * 179.97438 * 24 23 22 46 46 H 1.09002 * 109.47306 * 180.02562 * 25 24 23 47 47 H 1.09000 * 109.46790 * 60.00224 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5467 -0.6972 1.2632 6 1 4.0875 -0.2600 0.4369 7 6 4.2349 -1.2333 2.3310 8 7 3.5764 -1.7662 3.3370 9 14 6.1026 -1.2040 2.3480 10 1 6.5761 0.2021 2.2855 11 1 6.5962 -1.8380 3.5969 12 1 6.6202 -1.9532 1.1750 13 7 2.0196 -0.6925 -1.1995 14 6 1.9913 0.1964 -2.3689 15 1 1.2330 0.9655 -2.2224 16 6 1.6567 -0.6179 -3.6203 17 6 0.2526 -1.1540 -3.5102 18 7 -0.2197 -2.0029 -4.4444 19 8 -0.4524 -0.8216 -2.5810 20 6 3.3608 0.8564 -2.5409 21 6 3.6464 1.7593 -1.3392 22 6 5.0156 2.4199 -1.5116 23 6 5.0201 3.2580 -2.7916 24 6 4.7344 2.3552 -3.9934 25 6 3.3652 1.6946 -3.8210 26 1 -0.3633 0.4160 0.9397 27 1 -0.3634 0.6058 -0.8300 28 1 -0.3634 -1.0218 -0.1096 29 1 1.6933 -1.7547 1.2390 30 1 1.6603 -0.2195 2.1390 31 1 4.0605 -2.1437 4.0880 32 1 1.4909 -1.5342 -1.3722 33 1 1.7339 0.0205 -4.5005 34 1 2.3567 -1.4485 -3.7113 35 1 0.3441 -2.2690 -5.1874 36 1 -1.1237 -2.3477 -4.3738 37 1 4.1295 0.0866 -2.6078 38 1 2.8777 2.5292 -1.2724 39 1 3.6429 1.1623 -0.4273 40 1 5.7845 1.6502 -1.5786 41 1 5.2189 3.0634 -0.6557 42 1 5.9957 3.7283 -2.9146 43 1 4.2512 4.0277 -2.7245 44 1 5.5033 1.5854 -4.0604 45 1 4.7372 2.9523 -4.9052 46 1 3.1619 1.0510 -4.6769 47 1 2.5963 2.4643 -3.7540 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411520684.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:07 Heat of formation + Delta-G solvation = -74.453431 kcal Electronic energy + Delta-G solvation = -24268.344993 eV Core-core repulsion = 21063.282335 eV Total energy + Delta-G solvation = -3205.062658 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.93606 -38.42451 -36.13608 -33.72157 -33.39047 -31.94270 -30.42105 -29.45513 -27.96066 -26.94809 -23.72122 -22.74475 -22.32163 -20.86774 -19.83055 -19.62983 -18.99380 -17.30232 -16.73579 -16.11105 -15.49778 -15.04570 -14.62500 -14.34084 -14.05662 -13.96364 -13.68158 -13.52257 -13.16224 -12.53970 -12.38031 -12.25437 -11.82765 -11.74117 -11.48667 -11.46531 -11.14236 -11.11588 -10.86069 -10.74042 -10.59117 -10.47471 -10.26843 -10.09095 -9.90062 -9.77928 -9.70630 -9.65782 -9.59727 -8.94643 -8.59986 -8.14043 -7.32143 -5.76848 -3.73465 2.71154 3.46083 3.49973 3.52815 3.54864 4.64754 4.77405 4.85406 4.89050 5.05297 5.12174 5.23663 5.45266 5.56697 5.60485 5.65787 5.69197 5.80992 5.84227 5.87587 5.90527 6.00176 6.09934 6.18921 6.23637 6.29713 6.37997 6.38672 6.49405 6.52426 6.60442 6.68785 6.70474 6.83090 6.96037 7.05339 7.14565 7.29224 7.33198 7.77539 7.89669 8.22575 8.23383 8.29963 8.40690 8.75471 9.33812 9.87110 11.35512 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011725 B = 0.007183 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.511103 B = 3897.425169 C = 5556.898261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.086 3.914 3 H 0.069 0.931 4 C 0.032 3.968 5 C -0.484 4.484 6 H 0.068 0.932 7 C 0.048 3.952 8 N -0.906 5.906 9 Si 0.885 3.115 10 H -0.279 1.279 11 H -0.292 1.292 12 H -0.279 1.279 13 N -0.651 5.651 14 C 0.105 3.895 15 H 0.050 0.950 16 C -0.154 4.154 17 C 0.509 3.491 18 N -0.862 5.862 19 O -0.528 6.528 20 C -0.069 4.069 21 C -0.129 4.129 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.116 4.116 25 C -0.118 4.118 26 H 0.041 0.959 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.010 0.990 30 H 0.016 0.984 31 H 0.256 0.744 32 H 0.330 0.670 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.398 0.602 36 H 0.397 0.603 37 H 0.075 0.925 38 H 0.047 0.953 39 H 0.110 0.890 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.057 0.943 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.441 4.632 -19.021 19.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.023 4.023 3 H 0.087 0.913 4 C -0.006 4.006 5 C -0.523 4.523 6 H 0.086 0.914 7 C -0.151 4.151 8 N -0.547 5.547 9 Si 0.713 3.287 10 H -0.205 1.205 11 H -0.219 1.219 12 H -0.205 1.205 13 N -0.282 5.282 14 C -0.006 4.006 15 H 0.068 0.932 16 C -0.194 4.194 17 C 0.294 3.706 18 N -0.426 5.426 19 O -0.404 6.404 20 C -0.088 4.088 21 C -0.166 4.166 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.153 4.153 25 C -0.156 4.156 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.028 0.972 30 H 0.035 0.965 31 H 0.065 0.935 32 H 0.148 0.852 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.226 0.774 36 H 0.227 0.773 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.128 0.872 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.052 5.004 -18.022 18.816 hybrid contribution -0.042 -0.416 -0.542 0.685 sum -2.094 4.587 -18.564 19.237 Atomic orbital electron populations 1.22456 0.99009 1.01256 0.99830 1.21901 0.90374 0.98250 0.91775 0.91256 1.19117 0.96131 0.95117 0.90202 1.21265 0.91584 1.36203 1.03210 0.91363 1.25024 0.97596 0.96362 0.96073 1.69967 1.34941 1.40988 1.08797 0.86780 0.87028 0.77994 0.76858 1.20519 1.21854 1.20504 1.60727 1.59332 1.06552 1.01555 1.21300 0.95944 0.94560 0.88760 0.93186 1.22132 0.93303 1.02121 1.01843 1.20967 0.89952 0.78149 0.81518 1.43960 1.19129 1.50504 1.29026 1.90826 1.59668 1.58048 1.31811 1.21107 0.97040 0.96871 0.93816 1.21922 0.95292 0.98524 1.00868 1.21520 0.98631 0.98914 0.96514 1.21552 1.00577 0.98004 0.95486 1.21493 0.97581 0.98814 0.97445 1.21723 0.97019 0.98978 0.97887 0.94037 0.93427 0.93453 0.97180 0.96526 0.93482 0.85203 0.88409 0.88326 0.77406 0.77266 0.90622 0.93455 0.87178 0.92165 0.92433 0.92883 0.92511 0.92149 0.92879 0.92476 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.35 7.69 37.16 0.29 -3.06 16 2 C 0.09 1.84 1.76 -67.71 -0.12 1.72 16 3 H 0.07 1.48 5.36 -51.93 -0.28 1.21 16 4 C 0.03 0.84 4.68 -27.88 -0.13 0.70 16 5 C -0.48 -13.52 8.48 -34.44 -0.29 -13.81 16 6 H 0.07 1.84 5.45 -52.49 -0.29 1.55 16 7 C 0.05 1.40 5.46 -17.82 -0.10 1.31 16 8 N -0.91 -27.95 13.29 55.43 0.74 -27.21 16 9 Si 0.88 22.26 29.54 -169.99 -5.02 17.24 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 N -0.65 -12.33 5.27 -99.74 -0.53 -12.85 16 14 C 0.11 1.60 1.23 -67.71 -0.08 1.51 16 15 H 0.05 0.84 6.60 -51.93 -0.34 0.50 16 16 C -0.15 -1.75 4.92 -27.88 -0.14 -1.89 16 17 C 0.51 6.33 7.40 -10.99 -0.08 6.25 16 18 N -0.86 -7.04 8.87 31.22 0.28 -6.76 16 19 O -0.53 -8.83 12.58 5.55 0.07 -8.76 16 20 C -0.07 -1.00 1.98 -90.62 -0.18 -1.18 16 21 C -0.13 -2.13 3.88 -26.73 -0.10 -2.23 16 22 C -0.12 -1.76 5.92 -26.73 -0.16 -1.92 16 23 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 24 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 25 C -0.12 -1.35 4.74 -26.73 -0.13 -1.48 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.92 6.12 -51.93 -0.32 0.60 16 28 H 0.05 0.98 7.62 -51.93 -0.40 0.59 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.33 6.37 6.67 -39.30 -0.26 6.11 16 33 H 0.10 0.88 6.03 -51.93 -0.31 0.57 16 34 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.40 2.00 8.83 -40.82 -0.36 1.64 16 36 H 0.40 3.00 8.93 -40.82 -0.36 2.63 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.76 8.02 -51.93 -0.42 0.35 16 39 H 0.11 2.24 3.47 -51.93 -0.18 2.06 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.55 6.23 -51.93 -0.32 0.23 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 346.20 15.07 5.22 5.22 Total: -1.00 -32.51 346.20 -8.83 -41.34 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -8.05 Total: 8.90 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -1.54 Total: -17.10 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.49 Total: -46.83 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.07 Total: -8.76 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.51 -8.83 -41.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411520684.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.113 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds