Wall clock time and date at job start Tue Mar 31 2020 05:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46951 * 2 1 4 4 C 1.53002 * 109.47060 * 239.99653 * 2 1 3 5 5 C 1.50695 * 109.46843 * 175.81274 * 4 2 1 6 6 H 1.07991 * 120.00290 * 0.86408 * 5 4 2 7 7 C 1.37883 * 119.99681 * 180.86805 * 5 4 2 8 8 N 1.31511 * 120.00265 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99998 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47109 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46960 * 120.00001 * 9 7 5 12 12 H 1.48506 * 109.47264 * 240.00371 * 9 7 5 13 13 N 1.46899 * 109.46738 * 119.99834 * 2 1 3 14 14 C 1.46899 * 111.00169 * 283.95691 * 13 2 1 15 15 H 1.09001 * 109.47110 * 26.39903 * 14 13 2 16 16 C 1.53006 * 109.46962 * 146.39185 * 14 13 2 17 17 C 1.50695 * 109.47424 * 294.51478 * 16 14 13 18 18 N 1.34770 * 120.00101 * 174.01998 * 17 16 14 19 19 O 1.21290 * 119.99926 * 354.02631 * 17 16 14 20 20 C 1.52994 * 109.47097 * 266.39580 * 14 13 2 21 21 C 1.52997 * 109.47449 * 65.76725 * 20 14 13 22 22 C 1.53001 * 109.47327 * 179.97438 * 21 20 14 23 23 C 1.52998 * 109.47272 * 299.99879 * 22 21 20 24 24 C 1.53006 * 109.46861 * 59.99683 * 23 22 21 25 25 C 1.52994 * 109.47557 * 299.99955 * 24 23 22 26 26 H 1.08998 * 109.46695 * 305.17742 * 1 2 3 27 27 H 1.08998 * 109.46686 * 65.17698 * 1 2 3 28 28 H 1.08993 * 109.46954 * 185.17571 * 1 2 3 29 29 H 1.08998 * 109.47115 * 295.81437 * 4 2 1 30 30 H 1.09002 * 109.46898 * 55.81323 * 4 2 1 31 31 H 0.96998 * 120.00546 * 180.02562 * 8 7 5 32 32 H 1.00905 * 110.99883 * 160.00125 * 13 2 1 33 33 H 1.08999 * 109.46907 * 54.51539 * 16 14 13 34 34 H 1.08995 * 109.46804 * 174.51097 * 16 14 13 35 35 H 0.97002 * 119.99942 * 0.02562 * 18 17 16 36 36 H 0.96996 * 120.00221 * 180.02562 * 18 17 16 37 37 H 1.08999 * 109.47167 * 305.76347 * 20 14 13 38 38 H 1.09003 * 109.46808 * 299.99970 * 21 20 14 39 39 H 1.08999 * 109.47245 * 59.99670 * 21 20 14 40 40 H 1.08996 * 109.46818 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.46606 * 60.00130 * 22 21 20 42 42 H 1.08999 * 109.47028 * 299.99902 * 23 22 21 43 43 H 1.08997 * 109.47473 * 179.97438 * 23 22 21 44 44 H 1.09003 * 109.46824 * 179.97438 * 24 23 22 45 45 H 1.08999 * 109.46600 * 60.00355 * 24 23 22 46 46 H 1.08999 * 109.47167 * 300.00292 * 25 24 23 47 47 H 1.08996 * 109.47333 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5434 -0.6321 -1.3021 6 1 4.0823 -0.1250 -0.5156 7 6 4.2310 -1.1979 -2.3549 8 7 3.5747 -1.8150 -3.3131 9 14 6.0944 -1.0867 -2.4210 10 1 6.5886 -0.3463 -1.2323 11 1 6.6720 -2.4548 -2.4267 12 1 6.5042 -0.3712 -3.6561 13 7 2.0197 -0.6925 1.1995 14 6 1.8833 0.1569 2.3903 15 1 1.0700 0.8667 2.2390 16 6 1.5770 -0.7175 3.6080 17 6 0.2268 -1.3641 3.4354 18 7 -0.2031 -2.2756 4.3301 19 8 -0.4729 -1.0642 2.4912 20 6 3.1887 0.9193 2.6251 21 6 3.4211 1.8996 1.4737 22 6 4.7263 2.6625 1.7089 23 6 4.6350 3.4355 3.0261 24 6 4.4026 2.4551 4.1776 25 6 3.0974 1.6923 3.9424 26 1 -0.3632 0.5921 0.8400 27 1 -0.3632 0.4314 -0.9327 28 1 -0.3633 -1.0234 0.0927 29 1 1.7393 -1.7683 -1.2124 30 1 1.6167 -0.2527 -2.1376 31 1 4.0584 -2.2134 -4.0535 32 1 2.9748 -0.9944 1.0781 33 1 2.3404 -1.4899 3.7018 34 1 1.5722 -0.1004 4.5063 35 1 0.3564 -2.5152 5.0854 36 1 -1.0721 -2.6921 4.2189 37 1 4.0179 0.2135 2.6744 38 1 3.4857 1.3489 0.5352 39 1 2.5919 2.6054 1.4244 40 1 4.8920 3.3605 0.8883 41 1 5.5557 1.9569 1.7583 42 1 3.8057 4.1410 2.9766 43 1 5.5650 3.9786 3.1939 44 1 4.3380 3.0058 5.1161 45 1 5.2320 1.7496 4.2270 46 1 2.2680 2.3978 3.8929 47 1 2.9321 0.9936 4.7625 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411520685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:09 Heat of formation + Delta-G solvation = -77.269211 kcal Electronic energy + Delta-G solvation = -24219.646551 eV Core-core repulsion = 21014.461792 eV Total energy + Delta-G solvation = -3205.184760 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.72343 -38.40595 -36.11445 -33.54966 -33.26641 -31.99635 -30.56661 -29.28222 -28.05675 -27.18230 -23.72906 -22.74718 -22.37420 -20.80767 -19.91519 -19.56585 -18.81624 -17.13630 -16.53968 -16.21909 -15.41567 -15.18057 -14.58048 -14.22315 -14.08770 -14.00547 -13.96389 -13.43100 -13.02966 -12.78490 -12.39686 -12.12180 -11.84458 -11.71975 -11.52752 -11.35536 -11.15865 -11.04263 -10.96732 -10.73190 -10.53653 -10.52686 -10.32785 -10.20010 -10.12180 -9.89507 -9.78531 -9.43572 -9.36663 -8.92872 -8.85314 -8.31315 -7.32893 -5.94418 -3.96334 3.10603 3.31992 3.40038 3.41936 3.82187 4.48635 4.79046 4.83137 4.89021 4.99114 5.21599 5.28150 5.39988 5.42752 5.53444 5.63456 5.66352 5.70900 5.72525 5.75015 5.83848 6.01074 6.07309 6.14922 6.19302 6.27423 6.29100 6.37677 6.42111 6.50414 6.56036 6.67082 6.71011 6.78194 6.91965 7.02965 7.23694 7.37607 7.59978 7.71383 7.78881 8.10024 8.26486 8.45347 8.53735 8.68682 9.10967 9.66819 11.16749 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011584 B = 0.007041 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.488409 B = 3975.987106 C = 5632.244824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.088 3.912 3 H 0.033 0.967 4 C 0.022 3.978 5 C -0.515 4.515 6 H 0.056 0.944 7 C 0.059 3.941 8 N -0.892 5.892 9 Si 0.884 3.116 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.666 5.666 14 C 0.104 3.896 15 H 0.078 0.922 16 C -0.132 4.132 17 C 0.518 3.482 18 N -0.871 5.871 19 O -0.514 6.514 20 C -0.110 4.110 21 C -0.128 4.128 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.118 4.118 25 C -0.114 4.114 26 H 0.041 0.959 27 H 0.033 0.967 28 H 0.057 0.943 29 H 0.022 0.978 30 H 0.018 0.982 31 H 0.258 0.742 32 H 0.347 0.653 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.394 0.606 36 H 0.394 0.606 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.357 5.242 18.445 19.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.021 4.021 3 H 0.051 0.949 4 C -0.015 4.015 5 C -0.554 4.554 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.531 5.531 9 Si 0.713 3.287 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.299 5.299 14 C -0.007 4.007 15 H 0.096 0.904 16 C -0.173 4.173 17 C 0.303 3.697 18 N -0.435 5.435 19 O -0.387 6.387 20 C -0.130 4.130 21 C -0.165 4.165 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.155 4.155 25 C -0.152 4.152 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.036 0.964 31 H 0.068 0.932 32 H 0.168 0.832 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.221 0.779 36 H 0.224 0.776 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.240 5.144 17.654 18.524 hybrid contribution 1.809 0.230 0.112 1.827 sum -0.431 5.374 17.766 18.566 Atomic orbital electron populations 1.21728 0.96199 1.01828 0.98417 1.21711 0.93679 0.95773 0.90957 0.94916 1.19229 0.95147 0.96193 0.90913 1.21255 0.92216 1.34968 1.06938 0.92633 1.24985 0.97847 0.95483 0.95869 1.69976 1.35141 1.36926 1.11081 0.86661 0.86545 0.77639 0.77875 1.19800 1.21171 1.21213 1.60526 1.27941 1.39504 1.01902 1.21327 0.95819 0.92947 0.90641 0.90393 1.21815 0.94809 1.00443 1.00218 1.20649 0.88666 0.78921 0.81435 1.43993 1.23225 1.46349 1.29956 1.90777 1.57103 1.61543 1.29274 1.21905 0.98832 0.97414 0.94859 1.21884 0.96692 0.98030 0.99880 1.21509 0.98454 0.98993 0.96594 1.21539 1.00897 0.97802 0.95338 1.21521 0.98090 0.98246 0.97666 1.21666 0.97424 0.98748 0.97346 0.94030 0.94759 0.92438 0.95927 0.96385 0.93179 0.83195 0.89388 0.89394 0.77908 0.77622 0.91165 0.88821 0.92607 0.92277 0.92197 0.92364 0.92735 0.92683 0.92220 0.92231 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 7.80 37.16 0.29 -2.29 16 2 C 0.09 1.88 1.90 -67.71 -0.13 1.76 16 3 H 0.03 0.70 5.14 -51.93 -0.27 0.44 16 4 C 0.02 0.59 4.63 -27.88 -0.13 0.46 16 5 C -0.52 -14.00 8.11 -34.44 -0.28 -14.28 16 6 H 0.06 1.43 5.50 -52.49 -0.29 1.14 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 9 Si 0.88 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 N -0.67 -12.73 5.29 -99.74 -0.53 -13.26 16 14 C 0.10 1.58 1.20 -67.71 -0.08 1.50 16 15 H 0.08 1.32 6.25 -51.93 -0.32 1.00 16 16 C -0.13 -1.61 5.04 -27.88 -0.14 -1.75 16 17 C 0.52 7.25 7.92 -10.99 -0.09 7.16 16 18 N -0.87 -8.40 8.87 31.22 0.28 -8.13 16 19 O -0.51 -9.47 13.02 5.55 0.07 -9.40 16 20 C -0.11 -1.50 1.71 -90.62 -0.15 -1.66 16 21 C -0.13 -1.97 3.93 -26.73 -0.11 -2.08 16 22 C -0.12 -1.63 5.92 -26.73 -0.16 -1.79 16 23 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 24 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 25 C -0.11 -1.25 4.70 -26.73 -0.13 -1.38 16 26 H 0.04 0.82 6.09 -51.93 -0.32 0.51 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.29 7.44 -51.93 -0.39 0.90 16 29 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.35 7.10 6.67 -39.29 -0.26 6.83 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.09 0.84 6.02 -51.93 -0.31 0.53 16 35 H 0.39 2.51 8.83 -40.82 -0.36 2.15 16 36 H 0.39 3.57 8.93 -40.82 -0.36 3.20 16 37 H 0.07 1.01 8.01 -51.93 -0.42 0.59 16 38 H 0.09 1.78 4.04 -51.93 -0.21 1.57 16 39 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.58 6.21 -51.93 -0.32 0.25 16 LS Contribution 346.62 15.07 5.22 5.22 Total: -1.00 -31.75 346.62 -8.79 -40.54 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -8.04 Total: 10.43 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -1.51 Total: -15.66 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.49 Total: -47.58 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.07 Total: -9.40 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.75 -8.79 -40.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411520685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.727 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds