Wall clock time and date at job start Tue Mar 31 2020 05:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46951 * 2 1 4 4 C 1.53002 * 109.47060 * 239.99653 * 2 1 3 5 5 C 1.50695 * 109.46843 * 175.81274 * 4 2 1 6 6 H 1.07991 * 120.00290 * 0.86408 * 5 4 2 7 7 C 1.37883 * 119.99681 * 180.86805 * 5 4 2 8 8 N 1.31511 * 120.00265 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99998 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47109 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46960 * 120.00001 * 9 7 5 12 12 H 1.48506 * 109.47264 * 240.00371 * 9 7 5 13 13 N 1.46899 * 109.46738 * 119.99834 * 2 1 3 14 14 C 1.46899 * 111.00169 * 283.95691 * 13 2 1 15 15 H 1.09001 * 109.47110 * 26.39903 * 14 13 2 16 16 C 1.53006 * 109.46962 * 146.39185 * 14 13 2 17 17 C 1.50695 * 109.47424 * 294.51478 * 16 14 13 18 18 N 1.34770 * 120.00101 * 174.01998 * 17 16 14 19 19 O 1.21290 * 119.99926 * 354.02631 * 17 16 14 20 20 C 1.52994 * 109.47097 * 266.39580 * 14 13 2 21 21 C 1.52997 * 109.47449 * 65.76725 * 20 14 13 22 22 C 1.53001 * 109.47327 * 179.97438 * 21 20 14 23 23 C 1.52998 * 109.47272 * 299.99879 * 22 21 20 24 24 C 1.53006 * 109.46861 * 59.99683 * 23 22 21 25 25 C 1.52994 * 109.47557 * 299.99955 * 24 23 22 26 26 H 1.08998 * 109.46695 * 305.17742 * 1 2 3 27 27 H 1.08998 * 109.46686 * 65.17698 * 1 2 3 28 28 H 1.08993 * 109.46954 * 185.17571 * 1 2 3 29 29 H 1.08998 * 109.47115 * 295.81437 * 4 2 1 30 30 H 1.09002 * 109.46898 * 55.81323 * 4 2 1 31 31 H 0.96998 * 120.00546 * 180.02562 * 8 7 5 32 32 H 1.00905 * 110.99883 * 160.00125 * 13 2 1 33 33 H 1.08999 * 109.46907 * 54.51539 * 16 14 13 34 34 H 1.08995 * 109.46804 * 174.51097 * 16 14 13 35 35 H 0.97002 * 119.99942 * 0.02562 * 18 17 16 36 36 H 0.96996 * 120.00221 * 180.02562 * 18 17 16 37 37 H 1.08999 * 109.47167 * 305.76347 * 20 14 13 38 38 H 1.09003 * 109.46808 * 299.99970 * 21 20 14 39 39 H 1.08999 * 109.47245 * 59.99670 * 21 20 14 40 40 H 1.08996 * 109.46818 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.46606 * 60.00130 * 22 21 20 42 42 H 1.08999 * 109.47028 * 299.99902 * 23 22 21 43 43 H 1.08997 * 109.47473 * 179.97438 * 23 22 21 44 44 H 1.09003 * 109.46824 * 179.97438 * 24 23 22 45 45 H 1.08999 * 109.46600 * 60.00355 * 24 23 22 46 46 H 1.08999 * 109.47167 * 300.00292 * 25 24 23 47 47 H 1.08996 * 109.47333 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5434 -0.6321 -1.3021 6 1 4.0823 -0.1250 -0.5156 7 6 4.2310 -1.1979 -2.3549 8 7 3.5747 -1.8150 -3.3131 9 14 6.0944 -1.0867 -2.4210 10 1 6.5886 -0.3463 -1.2323 11 1 6.6720 -2.4548 -2.4267 12 1 6.5042 -0.3712 -3.6561 13 7 2.0197 -0.6925 1.1995 14 6 1.8833 0.1569 2.3903 15 1 1.0700 0.8667 2.2390 16 6 1.5770 -0.7175 3.6080 17 6 0.2268 -1.3641 3.4354 18 7 -0.2031 -2.2756 4.3301 19 8 -0.4729 -1.0642 2.4912 20 6 3.1887 0.9193 2.6251 21 6 3.4211 1.8996 1.4737 22 6 4.7263 2.6625 1.7089 23 6 4.6350 3.4355 3.0261 24 6 4.4026 2.4551 4.1776 25 6 3.0974 1.6923 3.9424 26 1 -0.3632 0.5921 0.8400 27 1 -0.3632 0.4314 -0.9327 28 1 -0.3633 -1.0234 0.0927 29 1 1.7393 -1.7683 -1.2124 30 1 1.6167 -0.2527 -2.1376 31 1 4.0584 -2.2134 -4.0535 32 1 2.9748 -0.9944 1.0781 33 1 2.3404 -1.4899 3.7018 34 1 1.5722 -0.1004 4.5063 35 1 0.3564 -2.5152 5.0854 36 1 -1.0721 -2.6921 4.2189 37 1 4.0179 0.2135 2.6744 38 1 3.4857 1.3489 0.5352 39 1 2.5919 2.6054 1.4244 40 1 4.8920 3.3605 0.8883 41 1 5.5557 1.9569 1.7583 42 1 3.8057 4.1410 2.9766 43 1 5.5650 3.9786 3.1939 44 1 4.3380 3.0058 5.1161 45 1 5.2320 1.7496 4.2270 46 1 2.2680 2.3978 3.8929 47 1 2.9321 0.9936 4.7625 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411520685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:09 Heat of formation + Delta-G solvation = -99.952632 kcal Electronic energy + Delta-G solvation = -24220.630178 eV Core-core repulsion = 21014.461792 eV Total energy + Delta-G solvation = -3206.168386 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.88821 -39.49863 -37.59487 -35.17889 -34.37351 -33.75182 -31.62463 -30.41891 -29.48930 -29.16172 -25.28729 -24.41614 -23.40447 -21.86862 -21.27663 -20.68188 -20.25977 -18.52545 -18.08954 -17.43518 -16.77285 -16.52608 -16.28816 -15.55448 -15.41024 -15.09648 -14.93572 -14.73809 -14.39994 -14.29480 -13.66198 -13.54655 -13.34635 -13.21052 -12.97161 -12.88301 -12.76692 -12.57322 -12.32864 -12.24903 -12.12845 -11.93726 -11.84735 -11.59139 -11.31289 -11.25219 -10.97749 -10.87371 -10.58855 -10.57058 -10.52798 -10.33033 -8.84851 -8.14212 -6.23464 1.39633 1.40082 1.52265 2.05243 2.42564 2.91340 3.17689 3.56091 3.78229 3.87750 3.95969 4.23469 4.27420 4.41492 4.47910 4.49842 4.56366 4.64277 4.67598 4.71903 4.76030 4.78561 4.84335 4.92143 4.97202 5.06429 5.12753 5.15335 5.25702 5.30945 5.34873 5.36321 5.37978 5.48306 5.50937 5.53022 5.61020 5.67219 5.71654 5.91881 6.18522 6.28003 6.61115 6.77930 6.89023 6.92804 7.44605 7.72539 8.98523 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011584 B = 0.007041 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.488409 B = 3975.987106 C = 5632.244824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.103 3.897 3 H 0.035 0.965 4 C 0.032 3.968 5 C -0.517 4.517 6 H 0.070 0.930 7 C -0.001 4.001 8 N -0.937 5.937 9 Si 0.958 3.042 10 H -0.257 1.257 11 H -0.282 1.282 12 H -0.285 1.285 13 N -0.670 5.670 14 C 0.105 3.895 15 H 0.061 0.939 16 C -0.125 4.125 17 C 0.510 3.490 18 N -0.850 5.850 19 O -0.568 6.568 20 C -0.101 4.101 21 C -0.126 4.126 22 C -0.118 4.118 23 C -0.115 4.115 24 C -0.115 4.115 25 C -0.108 4.108 26 H 0.053 0.947 27 H 0.031 0.969 28 H 0.037 0.963 29 H -0.015 1.015 30 H -0.016 1.016 31 H 0.260 0.740 32 H 0.338 0.662 33 H 0.102 0.898 34 H 0.126 0.874 35 H 0.413 0.587 36 H 0.399 0.601 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.240 6.032 21.935 22.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.007 4.007 3 H 0.053 0.947 4 C -0.005 4.005 5 C -0.555 4.555 6 H 0.087 0.913 7 C -0.198 4.198 8 N -0.578 5.578 9 Si 0.783 3.217 10 H -0.180 1.180 11 H -0.208 1.208 12 H -0.211 1.211 13 N -0.302 5.302 14 C -0.005 4.005 15 H 0.079 0.921 16 C -0.165 4.165 17 C 0.296 3.704 18 N -0.415 5.415 19 O -0.446 6.446 20 C -0.122 4.122 21 C -0.164 4.164 22 C -0.155 4.155 23 C -0.152 4.152 24 C -0.153 4.153 25 C -0.146 4.146 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.004 0.996 30 H 0.002 0.998 31 H 0.069 0.931 32 H 0.157 0.843 33 H 0.120 0.880 34 H 0.143 0.857 35 H 0.244 0.756 36 H 0.229 0.771 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.637 5.921 21.221 22.041 hybrid contribution 1.243 -0.030 -0.959 1.570 sum 0.606 5.891 20.262 21.110 Atomic orbital electron populations 1.21570 0.95672 1.00692 0.98712 1.21402 0.93867 0.95225 0.90208 0.94718 1.19068 0.95317 0.94075 0.92078 1.21573 0.92586 1.34251 1.07058 0.91251 1.25924 1.03203 0.95143 0.95497 1.70135 1.37355 1.38291 1.11985 0.85498 0.80080 0.77773 0.78302 1.18034 1.20790 1.21091 1.60505 1.27045 1.40510 1.02138 1.21384 0.96147 0.92924 0.90095 0.92100 1.21795 0.94123 1.00783 0.99836 1.21020 0.88959 0.79264 0.81196 1.43781 1.23540 1.44665 1.29489 1.90762 1.58624 1.63550 1.31659 1.21790 0.97485 0.96998 0.95878 1.21793 0.97595 0.98146 0.98853 1.21496 0.97068 0.98807 0.98145 1.21521 1.01707 0.97870 0.94142 1.21522 0.97611 0.98085 0.98047 1.21647 0.97963 0.99006 0.96017 0.92818 0.95012 0.94418 0.99612 0.99750 0.93139 0.84264 0.87957 0.85659 0.75638 0.77083 0.91470 0.92873 0.93069 0.93059 0.92842 0.92166 0.91472 0.90435 0.92100 0.92156 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.72 7.80 71.98 0.56 -4.16 16 2 C 0.10 4.59 1.90 44.92 0.09 4.67 16 3 H 0.04 1.55 5.14 -2.39 -0.01 1.54 16 4 C 0.03 1.78 4.63 29.85 0.14 1.91 16 5 C -0.52 -28.89 8.11 25.60 0.21 -28.69 16 6 H 0.07 3.63 5.50 -2.92 -0.02 3.62 16 7 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 8 N -0.94 -58.53 13.29 21.45 0.28 -58.24 16 9 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 10 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 N -0.67 -25.97 5.29 -469.46 -2.48 -28.46 16 14 C 0.11 3.08 1.20 44.92 0.05 3.13 16 15 H 0.06 2.02 6.25 -2.39 -0.01 2.00 16 16 C -0.13 -2.69 5.04 29.85 0.15 -2.54 16 17 C 0.51 13.38 7.92 87.66 0.69 14.08 16 18 N -0.85 -14.30 8.87 -173.54 -1.54 -15.84 16 19 O -0.57 -20.89 13.02 -3.06 -0.04 -20.93 16 20 C -0.10 -2.58 1.71 -10.79 -0.02 -2.60 16 21 C -0.13 -3.85 3.93 30.59 0.12 -3.73 16 22 C -0.12 -3.10 5.92 30.59 0.18 -2.92 16 23 C -0.11 -2.29 5.92 30.60 0.18 -2.11 16 24 C -0.12 -1.95 5.92 30.59 0.18 -1.77 16 25 C -0.11 -1.96 4.70 30.60 0.14 -1.82 16 26 H 0.05 2.18 6.09 -2.39 -0.01 2.17 16 27 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.04 1.76 7.44 -2.39 -0.02 1.74 16 29 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 30 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 31 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 32 H 0.34 13.98 6.67 -89.69 -0.60 13.38 16 33 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.13 1.78 6.02 -2.39 -0.01 1.77 16 35 H 0.41 3.82 8.83 -92.71 -0.82 3.00 16 36 H 0.40 6.46 8.93 -92.71 -0.83 5.63 16 37 H 0.07 1.78 8.01 -2.39 -0.02 1.76 16 38 H 0.05 2.05 4.04 -2.39 -0.01 2.04 16 39 H 0.05 1.56 8.11 -2.39 -0.02 1.54 16 40 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.09 1.16 6.21 -2.39 -0.01 1.15 16 Total: -1.00 -72.67 346.62 0.13 -72.54 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: -1.26 Total: 30.46 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 3.14 Total: -26.11 kcal Atomic # 7 Polarization: -98.80 SS G_CDS: -3.74 Total: -102.54 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.04 Total: -20.93 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -72.67 0.13 -72.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411520685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.415 kcal (2) G-P(sol) polarization free energy of solvation -72.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds