Wall clock time and date at job start Tue Mar 31 2020 05:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50699 * 109.47482 * 174.99860 * 4 2 1 6 6 H 1.08000 * 120.00130 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00220 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99957 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00316 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46470 * 60.00276 * 9 7 5 11 11 H 1.48495 * 109.47116 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47160 * 300.00311 * 9 7 5 13 13 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 14 14 C 1.46900 * 110.99736 * 58.95813 * 13 2 1 15 15 C 1.46895 * 111.00186 * 295.00225 * 13 2 1 16 16 C 1.53009 * 109.47166 * 189.99663 * 15 13 2 17 17 C 1.52994 * 109.47368 * 180.02562 * 16 15 13 18 18 N 1.46498 * 109.47575 * 180.02562 * 17 16 15 19 19 C 1.34775 * 120.00378 * 180.02562 * 18 17 16 20 20 O 1.21279 * 119.99459 * 359.97438 * 19 18 17 21 21 C 1.50701 * 120.00065 * 180.02562 * 19 18 17 22 22 C 1.53783 * 113.61046 * 279.13449 * 21 19 18 23 23 C 1.53962 * 87.01608 * 220.04782 * 22 21 19 24 24 C 1.53777 * 113.61387 * 181.52787 * 21 19 18 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 29 29 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 30 30 H 0.96998 * 119.99888 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.47292 * 59.99623 * 14 13 2 32 32 H 1.09002 * 109.47267 * 179.97438 * 14 13 2 33 33 H 1.09000 * 109.47210 * 300.00139 * 14 13 2 34 34 H 1.08999 * 109.47066 * 309.99575 * 15 13 2 35 35 H 1.09001 * 109.47511 * 70.00176 * 15 13 2 36 36 H 1.09000 * 109.47120 * 300.00471 * 16 15 13 37 37 H 1.09001 * 109.46487 * 59.99886 * 16 15 13 38 38 H 1.09001 * 109.47039 * 300.00732 * 17 16 15 39 39 H 1.09004 * 109.47084 * 60.00065 * 17 16 15 40 40 H 0.97002 * 119.99645 * 359.97438 * 18 17 16 41 41 H 1.09002 * 112.84689 * 50.32613 * 21 19 18 42 42 H 1.08993 * 113.61409 * 334.56376 * 22 21 19 43 43 H 1.08993 * 113.61168 * 105.47087 * 22 21 19 44 44 H 1.09002 * 113.53267 * 270.81470 * 23 22 21 45 45 H 1.08992 * 113.66222 * 139.93446 * 23 22 21 46 46 H 1.09001 * 113.60827 * 254.52704 * 24 21 19 47 47 H 1.08997 * 113.61320 * 25.34171 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1935 -2.3576 8 7 3.5765 -1.8379 -3.2993 9 14 6.0922 -1.0611 -2.4367 10 1 6.6846 -1.6861 -1.2269 11 1 6.5872 -1.7623 -3.6484 12 1 6.4845 0.3698 -2.4972 13 7 2.0196 -0.6924 1.1995 14 6 1.5283 -2.0760 1.2460 15 6 1.6487 0.0393 2.4181 16 6 2.3788 -0.5661 3.6187 17 6 1.9920 0.1955 4.8880 18 7 2.6915 -0.3837 6.0375 19 6 2.5028 0.1289 7.2695 20 8 1.7542 1.0701 7.4265 21 6 3.2229 -0.4666 8.4519 22 6 2.5553 -1.7374 9.0034 23 6 2.8802 -1.2009 10.4095 24 6 2.8723 0.2063 9.7894 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.7517 -1.7715 -1.2055 29 1 1.6055 -0.2617 -2.1369 30 1 4.0610 -2.2453 -4.0343 31 1 1.8762 -2.6150 0.3648 32 1 1.9060 -2.5657 2.1436 33 1 0.4385 -2.0742 1.2639 34 1 1.9297 1.0871 2.3124 35 1 0.5722 -0.0344 2.5727 36 1 2.0978 -1.6140 3.7243 37 1 3.4553 -0.4924 3.4641 38 1 2.2726 1.2435 4.7826 39 1 0.9154 0.1214 5.0423 40 1 3.2899 -1.1367 5.9119 41 1 4.2946 -0.5738 8.2846 42 1 1.4872 -1.7954 8.7943 43 1 3.0875 -2.6546 8.7513 44 1 3.8583 -1.5101 10.7780 45 1 2.0828 -1.3630 11.1346 46 1 3.6601 0.8560 10.1709 47 1 1.8916 0.6820 9.7950 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411633091.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:58 Heat of formation + Delta-G solvation = -29.576963 kcal Electronic energy + Delta-G solvation = -22134.712560 eV Core-core repulsion = 18931.595892 eV Total energy + Delta-G solvation = -3203.116668 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.44309 -38.25652 -37.66482 -35.43641 -33.17149 -31.91992 -29.79717 -27.57371 -27.25861 -26.05516 -25.89215 -24.05868 -22.82570 -21.24964 -20.81418 -19.55761 -18.70917 -17.60597 -16.32547 -16.16552 -15.97153 -15.59367 -15.41806 -14.62345 -14.56301 -14.36134 -13.66811 -13.57551 -13.12943 -13.00603 -12.81435 -12.40040 -12.26190 -12.12762 -11.90371 -11.61833 -11.52473 -11.44373 -11.32135 -11.01540 -10.90758 -10.78248 -10.73869 -10.61679 -10.50917 -10.31945 -9.95780 -9.81818 -9.19556 -9.15270 -8.99820 -8.26151 -7.49048 -5.89350 -3.87400 2.46567 3.03855 3.40079 3.43863 3.47278 4.14703 4.23400 4.38735 4.44708 4.49759 4.55920 4.83729 5.02362 5.16174 5.24082 5.29244 5.31044 5.41608 5.47502 5.50455 5.60008 5.60946 5.69197 5.73993 5.74720 5.82010 5.92633 5.95853 6.03171 6.05046 6.12863 6.23501 6.28704 6.35528 6.49940 6.65569 6.75991 6.97778 7.35588 7.52538 7.68736 7.90261 8.00884 8.08279 8.12218 8.57505 9.18552 9.74318 11.22541 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022194 B = 0.002804 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.303783 B = 9982.566484 C =10704.922646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.086 3.914 3 H 0.069 0.931 4 C 0.028 3.972 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.514 5.514 14 C 0.023 3.977 15 C 0.057 3.943 16 C -0.128 4.128 17 C 0.119 3.881 18 N -0.727 5.727 19 C 0.520 3.480 20 O -0.544 6.544 21 C -0.140 4.140 22 C -0.124 4.124 23 C -0.142 4.142 24 C -0.118 4.118 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.040 0.960 28 H 0.020 0.980 29 H 0.018 0.982 30 H 0.258 0.742 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.016 0.984 34 H 0.070 0.930 35 H 0.028 0.972 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.402 0.598 41 H 0.113 0.887 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.534 -0.402 23.229 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.022 4.022 3 H 0.088 0.912 4 C -0.009 4.009 5 C -0.530 4.530 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.237 5.237 14 C -0.125 4.125 15 C -0.073 4.073 16 C -0.166 4.166 17 C -0.005 4.005 18 N -0.378 5.378 19 C 0.306 3.694 20 O -0.421 6.421 21 C -0.161 4.161 22 C -0.162 4.162 23 C -0.180 4.180 24 C -0.156 4.156 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.038 0.962 29 H 0.036 0.964 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.034 0.966 34 H 0.089 0.911 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.236 0.764 41 H 0.131 0.869 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.532 0.178 23.124 23.263 hybrid contribution 0.478 -0.355 -0.307 0.670 sum -2.054 -0.177 22.817 22.910 Atomic orbital electron populations 1.22525 0.99828 1.01311 1.00719 1.21932 0.90029 0.98430 0.91800 0.91248 1.19225 0.96355 0.95432 0.89866 1.21142 0.91797 1.33047 1.07012 0.92188 1.25015 0.98033 0.95892 0.95984 1.69956 1.35312 1.36869 1.12362 0.86685 0.86341 0.78009 0.77057 1.20399 1.21676 1.20499 1.62108 1.59075 1.01753 1.00785 1.22438 0.96545 0.90923 1.02640 1.21961 0.96563 0.98426 0.90302 1.21808 1.02384 0.99760 0.92622 1.21366 0.96757 0.97915 0.84449 1.46077 1.48209 1.36290 1.07235 1.20537 0.81924 0.83008 0.83949 1.90688 1.37967 1.28103 1.85309 1.22818 1.01036 0.98898 0.93387 1.22858 1.01229 0.95936 0.96189 1.22866 1.02200 0.96530 0.96387 1.22795 1.03345 0.96441 0.93007 0.92867 0.92535 0.94120 0.96152 0.96365 0.93264 0.89883 0.92813 0.96567 0.91135 0.95438 0.91356 0.90284 0.91443 0.91793 0.76439 0.86898 0.89698 0.90562 0.89860 0.90978 0.91029 0.88746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 8.50 37.16 0.32 -2.86 16 2 C 0.09 1.73 2.29 -67.72 -0.16 1.58 16 3 H 0.07 1.43 8.03 -51.93 -0.42 1.02 16 4 C 0.03 0.71 4.26 -27.89 -0.12 0.59 16 5 C -0.49 -13.64 8.84 -34.44 -0.30 -13.95 16 6 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 13 N -0.51 -9.43 4.47 -234.89 -1.05 -10.47 16 14 C 0.02 0.39 8.63 60.06 0.52 0.91 16 15 C 0.06 0.83 4.40 -3.82 -0.02 0.81 16 16 C -0.13 -1.54 5.26 -26.73 -0.14 -1.68 16 17 C 0.12 1.36 5.67 -4.05 -0.02 1.33 16 18 N -0.73 -7.26 5.56 -60.30 -0.33 -7.59 16 19 C 0.52 5.88 7.35 -10.99 -0.08 5.80 16 20 O -0.54 -8.36 15.91 5.56 0.09 -8.27 16 21 C -0.14 -1.10 4.14 -90.96 -0.38 -1.48 16 22 C -0.12 -0.81 7.64 -25.82 -0.20 -1.01 16 23 C -0.14 -0.85 8.09 -25.82 -0.21 -1.06 16 24 C -0.12 -0.93 7.40 -25.92 -0.19 -1.12 16 25 H 0.05 0.91 6.38 -51.93 -0.33 0.58 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.04 0.62 6.75 -51.93 -0.35 0.27 16 28 H 0.02 0.54 6.17 -51.93 -0.32 0.22 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.08 1.67 6.22 -51.93 -0.32 1.35 16 32 H 0.05 0.80 6.30 -51.93 -0.33 0.47 16 33 H 0.02 0.26 6.28 -51.93 -0.33 -0.07 16 34 H 0.07 1.03 8.00 -51.93 -0.42 0.62 16 35 H 0.03 0.39 6.94 -51.93 -0.36 0.03 16 36 H 0.07 0.79 6.47 -51.93 -0.34 0.45 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.40 3.04 8.47 -40.82 -0.35 2.70 16 41 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.09 0.91 7.45 -51.93 -0.39 0.52 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -32.06 367.05 -9.56 -41.62 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -8.43 Total: -0.55 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -1.08 Total: -10.80 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: -0.65 Total: -44.41 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.09 Total: -8.27 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.06 -9.56 -41.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411633091.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.040 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds