Wall clock time and date at job start Tue Mar 31 2020 05:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47229 * 2 1 4 4 C 1.53001 * 109.47284 * 119.99780 * 2 1 3 5 5 C 1.50705 * 109.47112 * 185.00188 * 4 2 1 6 6 H 1.07991 * 119.99923 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99698 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00083 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99665 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47262 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46913 * 120.00228 * 9 7 5 12 12 H 1.48493 * 109.47158 * 239.99884 * 9 7 5 13 13 N 1.46896 * 109.47426 * 240.00332 * 2 1 3 14 14 C 1.46904 * 110.99663 * 306.04210 * 13 2 1 15 15 C 1.46896 * 111.00203 * 69.99509 * 13 2 1 16 16 C 1.52997 * 109.47114 * 170.00532 * 15 13 2 17 17 C 1.53006 * 109.47127 * 180.02562 * 16 15 13 18 18 N 1.46504 * 109.46883 * 180.02562 * 17 16 15 19 19 C 1.34775 * 119.99531 * 179.97438 * 18 17 16 20 20 O 1.21279 * 120.00300 * 0.02562 * 19 18 17 21 21 C 1.50703 * 119.99773 * 179.97438 * 19 18 17 22 22 C 1.53782 * 113.61334 * 279.13443 * 21 19 18 23 23 C 1.53952 * 87.01952 * 220.04779 * 22 21 19 24 24 C 1.53774 * 87.11260 * 25.36823 * 23 22 21 25 25 H 1.09000 * 109.47290 * 59.99976 * 1 2 3 26 26 H 1.08997 * 109.47426 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47245 * 300.00122 * 1 2 3 28 28 H 1.09000 * 109.47123 * 304.99819 * 4 2 1 29 29 H 1.09001 * 109.47018 * 65.00291 * 4 2 1 30 30 H 0.97010 * 119.99936 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.47401 * 183.94914 * 14 13 2 32 32 H 1.09000 * 109.47175 * 303.95876 * 14 13 2 33 33 H 1.09001 * 109.46714 * 63.95319 * 14 13 2 34 34 H 1.08996 * 109.47194 * 50.00700 * 15 13 2 35 35 H 1.09001 * 109.47271 * 290.00263 * 15 13 2 36 36 H 1.09001 * 109.47502 * 60.00479 * 16 15 13 37 37 H 1.09001 * 109.47289 * 300.00275 * 16 15 13 38 38 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 39 39 H 1.08993 * 109.46955 * 60.00011 * 17 16 15 40 40 H 0.96992 * 119.99966 * 359.97438 * 18 17 16 41 41 H 1.08994 * 112.85030 * 50.33656 * 21 19 18 42 42 H 1.08996 * 113.61657 * 334.57121 * 22 21 19 43 43 H 1.09011 * 113.61011 * 105.47334 * 22 21 19 44 44 H 1.09000 * 113.53962 * 270.81428 * 23 22 21 45 45 H 1.09005 * 113.66096 * 139.93736 * 23 22 21 46 46 H 1.09002 * 113.61850 * 220.08855 * 24 23 22 47 47 H 1.09001 * 113.69335 * 89.19069 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3127 6 1 4.0789 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3578 8 7 3.5765 -1.8385 3.2990 9 14 6.0922 -1.0621 2.4361 10 1 6.5837 -0.2916 1.2657 11 1 6.4872 -0.3666 3.6873 12 1 6.6856 -2.4232 2.4179 13 7 2.0197 -0.6924 -1.1994 14 6 1.4344 -2.0354 -1.3078 15 6 1.7529 0.0973 -2.4090 16 6 2.4884 -0.5256 -3.5972 17 6 2.2110 0.2973 -4.8570 18 7 2.9148 -0.2995 -5.9949 19 6 2.8155 0.2596 -7.2171 20 8 2.1438 1.2570 -7.3749 21 6 3.5399 -0.3540 -8.3875 22 6 5.0278 0.0278 -8.4598 23 6 4.8412 0.1441 -9.9836 24 6 3.3553 0.4226 -9.7021 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.6054 -0.2616 2.1370 29 1 1.7517 -1.7715 1.2056 30 1 4.0610 -2.2459 4.0341 31 1 1.8664 -2.5520 -2.1648 32 1 1.6466 -2.5987 -0.3990 33 1 0.3556 -1.9520 -1.4398 34 1 2.1024 1.1189 -2.2604 35 1 0.6813 0.1053 -2.6087 36 1 2.1388 -1.5473 -3.7460 37 1 3.5599 -0.5337 -3.3976 38 1 1.1395 0.3057 -5.0569 39 1 2.5609 1.3187 -4.7080 40 1 3.4523 -1.0970 -5.8685 41 1 3.3586 -1.4244 -8.4836 42 1 5.2594 0.9760 -7.9747 43 1 5.7000 -0.7769 -8.1615 44 1 5.0170 -0.7904 -10.5163 45 1 5.3678 0.9900 -10.4255 46 1 2.6790 -0.0637 -10.4051 47 1 3.1274 1.4786 -9.5570 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411633092.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:00 Heat of formation + Delta-G solvation = -30.204224 kcal Electronic energy + Delta-G solvation = -22141.589022 eV Core-core repulsion = 18938.445153 eV Total energy + Delta-G solvation = -3203.143869 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.43609 -38.24433 -37.65556 -35.43308 -33.17425 -31.93147 -29.80383 -27.48807 -27.29059 -26.08445 -25.90573 -24.05076 -22.81617 -21.24477 -20.80359 -19.54876 -18.73967 -17.59662 -16.32688 -16.15299 -15.99390 -15.57603 -15.39714 -14.64371 -14.54041 -14.36042 -13.69651 -13.53177 -13.16736 -12.92531 -12.79685 -12.45946 -12.23750 -12.05706 -11.97355 -11.64538 -11.50790 -11.42754 -11.31617 -11.05156 -10.89558 -10.78425 -10.71993 -10.64850 -10.48449 -10.31681 -9.96931 -9.81774 -9.19695 -9.16813 -8.96402 -8.26563 -7.49349 -5.89172 -3.86840 2.47078 3.04185 3.37335 3.44868 3.50218 4.15707 4.24793 4.39963 4.45861 4.49257 4.56244 4.83806 5.02630 5.17166 5.23696 5.29898 5.32817 5.43457 5.47976 5.52606 5.59994 5.61562 5.69978 5.73918 5.75139 5.82177 5.90753 5.94393 6.02612 6.06172 6.12297 6.23772 6.28231 6.35787 6.49020 6.61752 6.72510 6.98787 7.36025 7.52754 7.67368 7.90259 8.01589 8.08697 8.12342 8.58232 9.19430 9.74834 11.22862 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019669 B = 0.002941 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.251982 B = 9518.922607 C =10578.114880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.086 3.914 3 H 0.069 0.931 4 C 0.029 3.971 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.049 3.951 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.514 5.514 14 C 0.024 3.976 15 C 0.057 3.943 16 C -0.127 4.127 17 C 0.119 3.881 18 N -0.727 5.727 19 C 0.520 3.480 20 O -0.544 6.544 21 C -0.140 4.140 22 C -0.124 4.124 23 C -0.142 4.142 24 C -0.118 4.118 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.018 0.982 29 H 0.020 0.980 30 H 0.256 0.744 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.016 0.984 34 H 0.071 0.929 35 H 0.027 0.973 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.402 0.598 41 H 0.112 0.888 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.953 0.745 -22.920 22.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.022 4.022 3 H 0.087 0.913 4 C -0.008 4.008 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.150 4.150 8 N -0.545 5.545 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.237 5.237 14 C -0.124 4.124 15 C -0.072 4.072 16 C -0.165 4.165 17 C -0.005 4.005 18 N -0.378 5.378 19 C 0.306 3.694 20 O -0.421 6.421 21 C -0.161 4.161 22 C -0.162 4.162 23 C -0.180 4.180 24 C -0.156 4.156 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.034 0.966 34 H 0.089 0.911 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.236 0.764 41 H 0.130 0.870 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.902 1.332 -22.807 22.864 hybrid contribution 0.341 -0.422 0.270 0.606 sum -0.560 0.910 -22.537 22.562 Atomic orbital electron populations 1.22523 0.99760 1.01356 1.00663 1.21938 0.90062 0.98334 0.91861 0.91301 1.19212 0.96382 0.95399 0.89808 1.21213 0.91812 1.32806 1.06893 0.92118 1.25016 0.98036 0.95928 0.96021 1.69976 1.35112 1.37006 1.12429 0.86574 0.86438 0.77525 0.77665 1.19795 1.21420 1.21346 1.62096 1.58417 1.02136 1.01034 1.22422 0.95663 0.91715 1.02650 1.21962 0.96940 0.97879 0.90394 1.21800 1.02667 0.99308 0.92772 1.21370 0.96808 0.97527 0.84790 1.46075 1.51730 1.31532 1.08470 1.20539 0.80857 0.84109 0.83919 1.90688 1.40988 1.25637 1.84759 1.22816 0.97363 1.01520 0.94430 1.22863 0.93672 1.02503 0.97179 1.22865 0.96851 1.02271 0.96002 1.22797 0.96577 1.01639 0.94566 0.94215 0.92789 0.92547 0.96360 0.96224 0.93391 0.92725 0.90169 0.96596 0.91092 0.95515 0.91393 0.90251 0.91775 0.91456 0.76441 0.86974 0.89612 0.90531 0.89886 0.90957 0.91078 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 8.44 37.15 0.31 -2.84 16 2 C 0.09 1.73 2.25 -67.72 -0.15 1.58 16 3 H 0.07 1.42 7.93 -51.93 -0.41 1.00 16 4 C 0.03 0.73 4.37 -27.88 -0.12 0.61 16 5 C -0.49 -13.58 8.84 -34.44 -0.30 -13.89 16 6 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 7 C 0.05 1.41 5.46 -17.82 -0.10 1.31 16 8 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 N -0.51 -9.41 4.43 -234.89 -1.04 -10.45 16 14 C 0.02 0.40 8.44 60.07 0.51 0.91 16 15 C 0.06 0.84 4.53 -3.83 -0.02 0.82 16 16 C -0.13 -1.54 5.25 -26.73 -0.14 -1.68 16 17 C 0.12 1.36 5.67 -4.04 -0.02 1.34 16 18 N -0.73 -7.29 5.56 -60.29 -0.33 -7.63 16 19 C 0.52 5.90 7.35 -10.98 -0.08 5.82 16 20 O -0.54 -8.38 15.91 5.56 0.09 -8.29 16 21 C -0.14 -1.11 4.14 -90.95 -0.38 -1.48 16 22 C -0.12 -0.85 7.64 -25.83 -0.20 -1.05 16 23 C -0.14 -0.87 8.09 -25.83 -0.21 -1.08 16 24 C -0.12 -0.93 7.40 -25.92 -0.19 -1.12 16 25 H 0.04 0.60 6.91 -51.93 -0.36 0.24 16 26 H 0.05 0.92 6.42 -51.93 -0.33 0.58 16 27 H 0.06 0.95 8.14 -51.92 -0.42 0.52 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.02 0.52 6.26 -51.93 -0.33 0.20 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.05 0.81 6.47 -51.93 -0.34 0.47 16 32 H 0.08 1.57 6.21 -51.93 -0.32 1.25 16 33 H 0.02 0.25 6.46 -51.93 -0.34 -0.09 16 34 H 0.07 1.05 7.93 -51.93 -0.41 0.64 16 35 H 0.03 0.38 7.06 -51.93 -0.37 0.01 16 36 H 0.07 0.78 6.55 -51.93 -0.34 0.44 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.40 3.06 8.47 -40.82 -0.35 2.71 16 41 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 43 H 0.08 0.43 8.14 -51.92 -0.42 0.00 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.09 0.92 7.45 -51.93 -0.39 0.53 16 LS Contribution 367.61 15.07 5.54 5.54 Total: -1.00 -32.22 367.61 -9.59 -41.80 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -8.46 Total: -0.70 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -1.09 Total: -10.76 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: -0.64 Total: -44.47 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.09 Total: -8.29 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.22 -9.59 -41.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411633092.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.599 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds