Wall clock time and date at job start Tue Mar 31 2020 05:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.99401 * 2 1 4 4 C 1.54332 * 109.99714 * 238.95945 * 2 1 3 5 5 H 1.08999 * 110.66520 * 337.04977 * 4 2 1 6 6 C 1.52995 * 110.85192 * 100.19544 * 4 2 1 7 7 C 1.55151 * 103.02217 * 218.66692 * 4 2 1 8 8 H 1.09005 * 111.00256 * 277.23437 * 7 4 2 9 9 C 1.53000 * 111.00583 * 153.38122 * 7 4 2 10 10 C 1.54913 * 101.58141 * 35.30196 * 7 4 2 11 11 N 1.47024 * 109.87949 * 121.08836 * 2 1 3 12 12 C 1.34774 * 125.64871 * 298.39692 * 11 2 1 13 13 O 1.21583 * 120.00463 * 359.72060 * 12 11 2 14 14 N 1.34781 * 119.99938 * 179.71605 * 12 11 2 15 15 C 1.46499 * 119.99981 * 180.27499 * 14 12 11 16 16 C 1.53006 * 109.46771 * 179.72457 * 15 14 12 17 17 C 1.52998 * 109.47330 * 300.00022 * 16 15 14 18 18 C 1.52998 * 109.46962 * 60.00396 * 16 15 14 19 19 C 1.50700 * 109.46882 * 180.02562 * 16 15 14 20 20 H 1.08002 * 119.99649 * 357.00844 * 19 16 15 21 21 C 1.37872 * 120.00068 * 177.00523 * 19 16 15 22 22 N 1.31515 * 119.99779 * 5.54572 * 21 19 16 23 23 Si 1.86803 * 120.00158 * 185.54246 * 21 19 16 24 24 H 1.48500 * 109.47031 * 85.00431 * 23 21 19 25 25 H 1.48499 * 109.47392 * 205.00485 * 23 21 19 26 26 H 1.48502 * 109.47042 * 325.00307 * 23 21 19 27 27 H 1.08996 * 109.47473 * 300.36329 * 1 2 3 28 28 H 1.09006 * 109.47034 * 60.36474 * 1 2 3 29 29 H 1.08998 * 109.47014 * 180.36070 * 1 2 3 30 30 H 1.08999 * 109.47374 * 173.69580 * 6 4 2 31 31 H 1.09002 * 109.47514 * 293.69577 * 6 4 2 32 32 H 1.09006 * 109.47372 * 53.69098 * 6 4 2 33 33 H 1.09002 * 109.46732 * 306.34436 * 9 7 4 34 34 H 1.08992 * 109.46971 * 66.34897 * 9 7 4 35 35 H 1.08999 * 109.46819 * 186.34882 * 9 7 4 36 36 H 1.08996 * 110.36591 * 204.15072 * 10 7 4 37 37 H 1.09006 * 110.45715 * 81.88192 * 10 7 4 38 38 H 0.97004 * 119.99404 * 0.02562 * 14 12 11 39 39 H 1.09000 * 109.47403 * 299.72757 * 15 14 12 40 40 H 1.09004 * 109.46958 * 59.72889 * 15 14 12 41 41 H 1.09001 * 109.46657 * 53.93409 * 17 16 15 42 42 H 1.08994 * 109.46775 * 173.93111 * 17 16 15 43 43 H 1.09002 * 109.47186 * 293.93914 * 17 16 15 44 44 H 1.09000 * 109.47140 * 59.99744 * 18 16 15 45 45 H 1.09000 * 109.47015 * 179.97438 * 18 16 15 46 46 H 1.09001 * 109.47406 * 299.99786 * 18 16 15 47 47 H 0.97003 * 119.99795 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0578 -0.7478 -1.2426 5 1 1.3068 -1.4405 -1.6224 6 6 2.4818 0.2386 -2.3325 7 6 3.2864 -1.5183 -0.6913 8 1 4.1670 -0.8767 -0.6576 9 6 3.5593 -2.7777 -1.5161 10 6 2.8099 -1.8823 0.7371 11 7 2.0299 -0.7139 1.1840 12 6 1.8072 -0.3618 2.4658 13 8 1.1456 0.6265 2.7186 14 7 2.3179 -1.1052 3.4673 15 6 2.0707 -0.7258 4.8606 16 6 2.7506 -1.7321 5.7914 17 6 2.1820 -3.1291 5.5347 18 6 4.2569 -1.7373 5.5238 19 6 2.4958 -1.3422 7.2246 20 1 1.9491 -0.4383 7.4493 21 6 2.9607 -2.1394 8.2489 22 7 3.7186 -3.1800 7.9801 23 14 2.5140 -1.7415 10.0186 24 1 1.1942 -2.3401 10.3426 25 1 3.5472 -2.2996 10.9275 26 1 2.4454 -0.2682 10.1925 27 1 -0.3634 0.5194 0.8867 28 1 -0.3633 0.5082 -0.8933 29 1 -0.3633 -1.0276 0.0065 30 1 2.9528 -0.3051 -3.1514 31 1 1.6047 0.7678 -2.7049 32 1 3.1900 0.9560 -1.9178 33 1 2.6524 -3.3800 -1.5704 34 1 3.8675 -2.4934 -2.5221 35 1 4.3524 -3.3569 -1.0431 36 1 3.6655 -2.0410 1.3935 37 1 2.1806 -2.7721 0.7136 38 1 2.8460 -1.8935 3.2656 39 1 2.4757 0.2695 5.0435 40 1 0.9975 -0.7221 5.0513 41 1 2.2691 -3.3676 4.4746 42 1 2.7396 -3.8612 6.1188 43 1 1.1324 -3.1537 5.8276 44 1 4.6619 -0.7420 5.7067 45 1 4.7413 -2.4539 6.1872 46 1 4.4409 -2.0196 4.4871 47 1 4.0460 -3.7407 8.7009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416722695.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:55 Heat of formation + Delta-G solvation = -48.548979 kcal Electronic energy + Delta-G solvation = -23576.433970 eV Core-core repulsion = 20372.494613 eV Total energy + Delta-G solvation = -3203.939357 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.31141 -38.19408 -36.23940 -33.48360 -33.13374 -32.25412 -30.66138 -28.89815 -26.60700 -25.69929 -25.48092 -24.75166 -24.05224 -21.57060 -20.32938 -19.36673 -18.74577 -17.61543 -16.46053 -15.77849 -15.06919 -14.72355 -14.58276 -14.44702 -14.06544 -13.78719 -13.48271 -13.30881 -12.90421 -12.81706 -12.60847 -12.48890 -12.13694 -12.08805 -12.00387 -11.77083 -11.51697 -11.35953 -11.15704 -10.92507 -10.84179 -10.77317 -10.66484 -10.40280 -10.34268 -10.18300 -9.62160 -9.58936 -9.26936 -8.76514 -8.59363 -8.36477 -8.05170 -6.00054 -4.08531 2.97935 3.30981 3.37204 3.41350 3.68311 4.24409 4.31013 4.41580 4.53695 4.65249 5.06952 5.11741 5.20241 5.23245 5.27142 5.33111 5.35990 5.43975 5.55664 5.60658 5.69273 5.76603 5.78598 5.89339 5.91817 6.09094 6.16858 6.26502 6.35790 6.40901 6.52849 6.58176 6.84796 6.85497 6.97221 7.06428 7.15920 7.39283 7.50111 7.58894 7.73106 8.02480 8.14871 8.41086 8.51126 8.91046 9.12028 9.56661 11.02050 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031441 B = 0.003756 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.346104 B = 7452.142223 C = 7997.046140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.071 0.929 4 C -0.097 4.097 5 H 0.085 0.915 6 C -0.140 4.140 7 C -0.100 4.100 8 H 0.085 0.915 9 C -0.140 4.140 10 C 0.104 3.896 11 N -0.639 5.639 12 C 0.716 3.284 13 O -0.596 6.596 14 N -0.732 5.732 15 C 0.151 3.849 16 C 0.056 3.944 17 C -0.127 4.127 18 C -0.128 4.128 19 C -0.506 4.506 20 H 0.058 0.942 21 C 0.067 3.933 22 N -0.886 5.886 23 Si 0.893 3.107 24 H -0.280 1.280 25 H -0.288 1.288 26 H -0.275 1.275 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.393 0.607 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.005 0.995 42 H 0.080 0.920 43 H 0.029 0.971 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.004 0.996 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.070 0.096 -19.980 19.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.055 3.945 3 H 0.089 0.911 4 C -0.116 4.116 5 H 0.103 0.897 6 C -0.198 4.198 7 C -0.120 4.120 8 H 0.103 0.897 9 C -0.198 4.198 10 C -0.020 4.020 11 N -0.378 5.378 12 C 0.418 3.582 13 O -0.475 6.475 14 N -0.387 5.387 15 C 0.028 3.972 16 C 0.055 3.945 17 C -0.184 4.184 18 C -0.186 4.186 19 C -0.545 4.545 20 H 0.076 0.924 21 C -0.134 4.134 22 N -0.524 5.524 23 Si 0.721 3.279 24 H -0.206 1.206 25 H -0.214 1.214 26 H -0.200 1.200 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.228 0.772 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.024 0.976 42 H 0.099 0.901 43 H 0.048 0.952 44 H 0.045 0.955 45 H 0.104 0.896 46 H 0.023 0.977 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.477 0.713 -19.538 19.557 hybrid contribution 0.027 -0.271 0.937 0.976 sum -0.449 0.442 -18.601 18.612 Atomic orbital electron populations 1.22152 0.95142 1.02017 1.02708 1.21372 0.94226 0.95809 0.83141 0.91085 1.22378 0.97296 0.97457 0.94502 0.89676 1.21745 1.01452 0.98724 0.97844 1.22401 0.98036 0.97482 0.94039 0.89679 1.21696 1.01974 0.96516 0.99589 1.22297 0.95287 0.89182 0.95241 1.47648 1.56627 1.29581 1.03982 1.15589 0.80311 0.83119 0.79169 1.90862 1.45399 1.28636 1.82567 1.45546 1.56389 1.30355 1.06377 1.21569 0.99799 0.99035 0.76844 1.18364 0.91940 0.90966 0.93226 1.21783 0.99844 1.00510 0.96313 1.21826 0.98901 1.00872 0.96981 1.20974 1.35421 1.08483 0.89597 0.92408 1.24871 0.94575 0.95095 0.98887 1.69832 1.33841 1.16813 1.31933 0.86598 0.78118 0.78658 0.84555 1.20642 1.21366 1.19956 0.90867 0.92251 0.92828 0.92205 0.92356 0.92357 0.92343 0.92241 0.92146 0.90957 0.91694 0.77209 0.93020 0.92983 0.97606 0.90079 0.95223 0.95483 0.89648 0.97746 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.11 37.16 0.34 -1.69 16 2 C 0.16 1.98 3.06 -66.95 -0.20 1.78 16 3 H 0.07 0.96 7.77 -51.92 -0.40 0.56 16 4 C -0.10 -0.87 2.54 -88.79 -0.23 -1.09 16 5 H 0.08 0.71 7.72 -51.93 -0.40 0.31 16 6 C -0.14 -1.02 9.16 37.15 0.34 -0.68 16 7 C -0.10 -0.89 3.09 -88.47 -0.27 -1.16 16 8 H 0.08 0.77 8.05 -51.93 -0.42 0.36 16 9 C -0.14 -0.97 9.29 37.16 0.35 -0.62 16 10 C 0.10 1.19 6.04 -2.53 -0.02 1.17 16 11 N -0.64 -9.49 3.06 -168.68 -0.52 -10.01 16 12 C 0.72 13.76 8.28 -86.92 -0.72 13.04 16 13 O -0.60 -13.52 15.39 5.29 0.08 -13.44 16 14 N -0.73 -14.06 4.86 -65.22 -0.32 -14.37 16 15 C 0.15 3.35 4.50 -4.04 -0.02 3.33 16 16 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 17 C -0.13 -2.91 8.03 37.16 0.30 -2.61 16 18 C -0.13 -2.94 8.11 37.16 0.30 -2.64 16 19 C -0.51 -13.48 8.01 -34.44 -0.28 -13.75 16 20 H 0.06 1.56 7.75 -52.49 -0.41 1.15 16 21 C 0.07 1.78 5.13 -17.82 -0.09 1.69 16 22 N -0.89 -23.79 9.45 55.43 0.52 -23.27 16 23 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 27 H 0.07 1.15 6.89 -51.93 -0.36 0.79 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.45 8.07 -51.93 -0.42 0.03 16 33 H 0.06 0.40 8.11 -51.93 -0.42 -0.03 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.84 7.30 -51.93 -0.38 0.46 16 37 H 0.06 0.71 8.04 -51.93 -0.42 0.29 16 38 H 0.39 6.89 4.64 -40.82 -0.19 6.70 16 39 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.00 0.10 6.71 -51.93 -0.35 -0.25 16 42 H 0.08 2.03 6.25 -51.93 -0.32 1.70 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.08 2.15 6.10 -51.93 -0.32 1.84 16 46 H 0.00 0.07 6.86 -51.93 -0.36 -0.28 16 47 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -29.35 358.47 -8.65 -38.00 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -8.52 Total: 3.76 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -0.28 Total: -2.00 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: -0.31 Total: -47.65 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.08 Total: -13.44 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.35 -8.65 -38.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416722695.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.548 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds