Wall clock time and date at job start Tue Mar 31 2020 05:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.64097 * 2 1 4 4 C 1.55155 * 110.72334 * 236.84975 * 2 1 3 5 5 H 1.09002 * 111.00176 * 159.06396 * 4 2 1 6 6 C 1.53004 * 111.00160 * 35.21713 * 4 2 1 7 7 C 1.54901 * 101.58407 * 277.14168 * 4 2 1 8 8 N 1.47429 * 104.83255 * 322.98830 * 7 4 2 9 9 C 1.34769 * 125.64853 * 204.08874 * 8 7 4 10 10 O 1.21588 * 119.99975 * 180.02562 * 9 8 7 11 11 N 1.34784 * 120.00175 * 0.03255 * 9 8 7 12 12 C 1.46499 * 119.99897 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47073 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.46989 * 59.99821 * 13 12 11 15 15 C 1.53000 * 109.47124 * 300.00146 * 13 12 11 16 16 C 1.50694 * 109.47168 * 179.97438 * 13 12 11 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 13 12 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47021 * 108.70074 * 24.35536 * 8 7 4 25 25 H 1.09001 * 109.88219 * 118.12878 * 24 8 7 26 26 C 1.52999 * 109.88463 * 239.29431 * 24 8 7 27 27 H 1.08996 * 109.47234 * 183.14306 * 1 2 3 28 28 H 1.08998 * 109.47199 * 303.14848 * 1 2 3 29 29 H 1.09004 * 109.46614 * 63.14546 * 1 2 3 30 30 H 1.09002 * 109.46789 * 306.34626 * 6 4 2 31 31 H 1.09000 * 109.47350 * 66.34730 * 6 4 2 32 32 H 1.08999 * 109.46864 * 186.34706 * 6 4 2 33 33 H 1.08999 * 110.36939 * 204.14963 * 7 4 2 34 34 H 1.09001 * 110.36849 * 81.82981 * 7 4 2 35 35 H 0.96991 * 119.99637 * 359.97438 * 11 9 8 36 36 H 1.09002 * 109.47239 * 59.99631 * 12 11 9 37 37 H 1.08998 * 109.47134 * 299.99061 * 12 11 9 38 38 H 1.08997 * 109.47359 * 180.02562 * 14 13 12 39 39 H 1.09007 * 109.47356 * 300.00069 * 14 13 12 40 40 H 1.09000 * 109.47156 * 59.99794 * 14 13 12 41 41 H 1.09002 * 109.47106 * 299.99750 * 15 13 12 42 42 H 1.08998 * 109.47089 * 59.99697 * 15 13 12 43 43 H 1.08995 * 109.47131 * 179.97438 * 15 13 12 44 44 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.46697 * 58.54295 * 26 24 8 46 46 H 1.08993 * 109.46989 * 178.54689 * 26 24 8 47 47 H 1.09005 * 109.47099 * 298.55334 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0790 -0.7936 -1.2150 5 1 3.1062 -0.5050 -1.4382 6 6 1.1816 -0.6102 -2.4405 7 6 2.0126 -2.2498 -0.6911 8 7 2.3716 -2.1543 0.7357 9 6 2.8848 -3.1501 1.4848 10 8 3.1438 -2.9575 2.6571 11 7 3.1112 -4.3595 0.9345 12 6 3.6696 -5.4418 1.7488 13 6 3.8257 -6.6980 0.8895 14 6 4.7666 -6.4022 -0.2802 15 6 2.4577 -7.1198 0.3495 16 6 4.4008 -7.8111 1.7269 17 1 4.6314 -7.6399 2.7680 18 6 4.6324 -9.0483 1.1639 19 7 4.3511 -9.2570 -0.1037 20 14 5.3459 -10.4279 2.2018 21 1 6.8284 -10.3905 2.1233 22 1 4.9204 -10.2557 3.6141 23 1 4.8561 -11.7342 1.6929 24 6 2.0709 -0.7947 1.2074 25 1 1.3185 -0.8336 1.9951 26 6 3.3458 -0.1327 1.7339 27 1 -0.3633 -1.0261 0.0563 28 1 -0.3633 0.5619 0.8604 29 1 -0.3633 0.4643 -0.9169 30 1 0.1540 -0.8635 -2.1796 31 1 1.2271 0.4271 -2.7723 32 1 1.5244 -1.2636 -3.2428 33 1 2.7293 -2.8768 -1.2214 34 1 1.0039 -2.6475 -0.8027 35 1 2.9044 -4.5132 -0.0005 36 1 2.9992 -5.6528 2.5819 37 1 4.6441 -5.1412 2.1337 38 1 4.8775 -7.2970 -0.8926 39 1 4.3511 -5.5969 -0.8861 40 1 5.7412 -6.1016 0.1045 41 1 1.7874 -7.3306 1.1828 42 1 2.0423 -6.3145 -0.2563 43 1 2.5690 -8.0145 -0.2630 44 1 4.5144 -10.1273 -0.4999 45 1 4.0940 -0.1041 0.9417 46 1 3.1205 0.8833 2.0578 47 1 3.7313 -0.7059 2.5771 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416722697.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:59 Heat of formation + Delta-G solvation = -45.075306 kcal Electronic energy + Delta-G solvation = -23691.739944 eV Core-core repulsion = 20487.951217 eV Total energy + Delta-G solvation = -3203.788727 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.41110 -38.27920 -36.25299 -33.45011 -33.21863 -31.93866 -30.56576 -28.92442 -26.69417 -25.69484 -25.49858 -24.71083 -24.23621 -22.05477 -19.65937 -19.32391 -18.68746 -17.69337 -16.27053 -15.80514 -15.44341 -14.87046 -14.69672 -14.24848 -14.09091 -13.70385 -13.45497 -13.20117 -13.06928 -12.84478 -12.59509 -12.29819 -12.13432 -12.12241 -11.93318 -11.73190 -11.63870 -11.33666 -11.16281 -10.83959 -10.75894 -10.66604 -10.62407 -10.47692 -10.34844 -10.17341 -9.61078 -9.59470 -9.26608 -8.76082 -8.58950 -8.37188 -8.05323 -5.99588 -4.09256 2.98821 3.30251 3.37065 3.41699 3.68348 4.23077 4.31643 4.41782 4.57823 4.71251 4.91306 5.15077 5.20716 5.26012 5.27210 5.34672 5.40152 5.50262 5.59767 5.61583 5.68722 5.74854 5.78153 5.91801 5.97599 6.08603 6.19333 6.24236 6.36867 6.40982 6.53705 6.59368 6.84713 6.85843 6.97768 7.06544 7.16235 7.39392 7.50438 7.58930 7.72489 8.03892 8.15536 8.41482 8.51338 8.90676 9.12322 9.56285 11.01882 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030445 B = 0.003835 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.462253 B = 7299.418893 C = 7805.184785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 H 0.088 0.912 4 C -0.099 4.099 5 H 0.084 0.916 6 C -0.144 4.144 7 C 0.104 3.896 8 N -0.638 5.638 9 C 0.716 3.284 10 O -0.596 6.596 11 N -0.732 5.732 12 C 0.150 3.850 13 C 0.056 3.944 14 C -0.128 4.128 15 C -0.129 4.129 16 C -0.504 4.504 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.274 1.274 23 H -0.287 1.287 24 C 0.159 3.841 25 H 0.070 0.930 26 C -0.163 4.163 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.393 0.607 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.085 0.915 39 H 0.004 0.996 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.004 0.996 43 H 0.085 0.915 44 H 0.259 0.741 45 H 0.053 0.947 46 H 0.058 0.942 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.870 17.589 -5.742 19.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.106 0.894 4 C -0.118 4.118 5 H 0.102 0.898 6 C -0.202 4.202 7 C -0.019 4.019 8 N -0.377 5.377 9 C 0.418 3.582 10 O -0.475 6.475 11 N -0.387 5.387 12 C 0.027 3.973 13 C 0.055 3.945 14 C -0.186 4.186 15 C -0.186 4.186 16 C -0.543 4.543 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.199 1.199 23 H -0.213 1.213 24 C 0.055 3.945 25 H 0.089 0.911 26 C -0.221 4.221 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.228 0.772 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.103 0.897 39 H 0.023 0.977 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.023 0.977 43 H 0.103 0.897 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.622 17.455 -4.929 19.308 hybrid contribution 0.341 -0.895 0.038 0.959 sum -6.281 16.560 -4.891 18.374 Atomic orbital electron populations 1.21884 0.94340 1.02255 1.01832 1.22309 0.96174 0.99146 0.94011 0.89413 1.22339 1.00284 0.94504 0.94697 0.89810 1.21789 0.99826 1.01840 0.96719 1.22301 1.00407 0.97250 0.81991 1.47637 1.68394 1.11241 1.10462 1.15590 0.78318 0.80002 0.84275 1.90860 1.59414 1.82231 1.14965 1.45536 1.68170 1.10235 1.14710 1.21577 0.96648 0.85506 0.93520 1.18364 0.93217 0.90187 0.92737 1.21809 0.97809 0.99956 0.99043 1.21805 0.96589 1.00801 0.99434 1.20991 1.41805 0.95038 0.96450 0.92414 1.24878 0.95299 0.98357 0.94978 1.69810 1.48289 1.23028 1.11392 0.86572 0.79268 0.81383 0.80650 1.20736 1.19893 1.21297 1.21356 0.96766 0.80744 0.95624 0.91150 1.22164 0.97545 1.00069 1.02351 0.92311 0.92522 0.91903 0.91777 0.92268 0.92290 0.91049 0.91648 0.77224 0.93007 0.93022 0.89657 0.97701 0.95480 0.95467 0.97656 0.89667 0.93061 0.92822 0.92320 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 7.92 37.16 0.29 -0.85 16 2 C -0.10 -0.86 3.01 -88.78 -0.27 -1.13 16 3 H 0.09 0.68 7.84 -51.93 -0.41 0.27 16 4 C -0.10 -0.88 3.51 -88.47 -0.31 -1.19 16 5 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 6 C -0.14 -1.00 8.46 37.16 0.31 -0.68 16 7 C 0.10 1.19 5.73 -2.53 -0.01 1.18 16 8 N -0.64 -9.42 3.08 -168.69 -0.52 -9.94 16 9 C 0.72 13.72 8.27 -86.92 -0.72 13.00 16 10 O -0.60 -13.48 15.23 5.29 0.08 -13.40 16 11 N -0.73 -14.05 4.92 -65.23 -0.32 -14.37 16 12 C 0.15 3.35 4.50 -4.04 -0.02 3.33 16 13 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 14 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 15 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 16 C -0.50 -13.41 8.01 -34.44 -0.28 -13.69 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 18 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 19 N -0.89 -23.78 9.35 55.43 0.52 -23.26 16 20 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.16 1.98 3.08 -66.95 -0.21 1.78 16 25 H 0.07 0.94 7.84 -51.93 -0.41 0.54 16 26 C -0.16 -2.04 9.06 37.16 0.34 -1.71 16 27 H 0.06 0.52 7.57 -51.93 -0.39 0.13 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.40 6.64 -51.93 -0.34 0.06 16 30 H 0.06 0.43 6.34 -51.93 -0.33 0.10 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.83 7.30 -51.93 -0.38 0.45 16 34 H 0.07 0.71 7.69 -51.93 -0.40 0.31 16 35 H 0.39 6.89 4.64 -40.82 -0.19 6.71 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 39 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 43 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 44 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 1.19 6.73 -51.93 -0.35 0.84 16 LS Contribution 352.73 15.07 5.32 5.32 Total: -1.00 -29.24 352.73 -8.69 -37.94 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -8.31 Total: 4.17 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -0.44 Total: -2.36 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -0.32 Total: -47.56 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.08 Total: -13.40 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.24 -8.69 -37.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416722697.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.137 kcal (2) G-P(sol) polarization free energy of solvation -29.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds