Wall clock time and date at job start Tue Mar 31 2020 05:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.89323 * 2 1 4 4 C 1.54696 * 111.10168 * 236.25006 * 2 1 3 5 5 N 1.47424 * 104.94392 * 205.10522 * 4 2 1 6 6 C 1.34773 * 125.64847 * 204.07068 * 5 4 2 7 7 O 1.21593 * 119.99894 * 179.69706 * 6 5 4 8 8 N 1.34777 * 120.00097 * 359.42578 * 6 5 4 9 9 C 1.46504 * 119.99854 * 180.27545 * 8 6 5 10 10 C 1.53004 * 109.46928 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.46866 * 299.99525 * 10 9 8 12 12 C 1.52994 * 109.47172 * 59.99462 * 10 9 8 13 13 C 1.50699 * 109.46843 * 180.02562 * 10 9 8 14 14 H 1.08001 * 119.99981 * 359.97438 * 13 10 9 15 15 C 1.37876 * 119.99570 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00351 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99771 * 179.97438 * 15 13 10 18 18 H 1.48496 * 109.47191 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47055 * 119.99859 * 17 15 13 20 20 H 1.48498 * 109.47283 * 239.99935 * 17 15 13 21 21 C 1.47023 * 108.69833 * 23.81315 * 5 4 2 22 22 H 1.09006 * 109.88183 * 118.58233 * 21 5 4 23 23 C 1.53003 * 109.88065 * 239.74665 * 21 5 4 24 24 C 1.54315 * 107.27448 * 359.16469 * 21 5 4 25 25 H 1.09007 * 110.72359 * 96.17123 * 24 21 5 26 26 C 1.52999 * 110.72172 * 219.26551 * 24 21 5 27 27 H 1.09008 * 109.46484 * 296.11687 * 1 2 3 28 28 H 1.09004 * 109.46979 * 56.11148 * 1 2 3 29 29 H 1.08993 * 109.47583 * 176.11675 * 1 2 3 30 30 H 1.09005 * 110.39039 * 86.19333 * 4 2 1 31 31 H 1.08993 * 110.23417 * 323.94682 * 4 2 1 32 32 H 0.97000 * 119.99736 * 0.26819 * 8 6 5 33 33 H 1.08998 * 109.46968 * 299.99782 * 9 8 6 34 34 H 1.08997 * 109.47198 * 59.99605 * 9 8 6 35 35 H 1.09007 * 109.47177 * 60.00009 * 11 10 9 36 36 H 1.08994 * 109.47297 * 180.02562 * 11 10 9 37 37 H 1.08997 * 109.47361 * 300.00353 * 11 10 9 38 38 H 1.09006 * 109.47135 * 60.00046 * 12 10 9 39 39 H 1.09001 * 109.47144 * 179.97438 * 12 10 9 40 40 H 1.08998 * 109.47717 * 300.00195 * 12 10 9 41 41 H 0.96996 * 120.00389 * 180.02562 * 16 15 13 42 42 H 1.08996 * 109.47415 * 58.54762 * 23 21 5 43 43 H 1.09001 * 109.46945 * 178.54922 * 23 21 5 44 44 H 1.09005 * 109.46939 * 298.54734 * 23 21 5 45 45 H 1.09001 * 109.46826 * 58.54812 * 26 24 21 46 46 H 1.09001 * 109.47579 * 178.54661 * 26 24 21 47 47 H 1.09001 * 109.47166 * 298.54822 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0869 -0.8018 -1.2000 5 7 3.4271 -1.2434 -0.7730 6 6 4.4479 -1.5609 -1.5937 7 8 5.5161 -1.9090 -1.1286 8 7 4.2831 -1.4978 -2.9298 9 6 5.3910 -1.8488 -3.8219 10 6 4.9430 -1.6941 -5.2767 11 6 3.7572 -2.6226 -5.5465 12 6 4.5238 -0.2447 -5.5298 13 6 6.0825 -2.0558 -6.1942 14 1 7.0313 -2.3646 -5.7811 15 6 5.9135 -1.9924 -7.5611 16 7 4.7579 -1.6168 -8.0642 17 14 7.3261 -2.4399 -8.6986 18 1 8.5095 -2.8271 -7.8894 19 1 6.9239 -3.5787 -9.5628 20 1 7.6675 -1.2705 -9.5477 21 6 3.4674 -1.2740 0.6963 22 1 3.6649 -2.2892 1.0407 23 6 4.5555 -0.3272 1.2068 24 6 2.0862 -0.8076 1.2024 25 1 1.4467 -1.6628 1.4215 26 6 2.2348 0.0847 2.4363 27 1 -0.3632 0.4524 0.9228 28 1 -0.3633 0.5730 -0.8531 29 1 -0.3634 -1.0252 -0.0696 30 1 2.1603 -0.1646 -2.0813 31 1 1.4513 -1.6630 -1.4055 32 1 3.4310 -1.2201 -3.3008 33 1 6.2360 -1.1877 -3.6293 34 1 5.6893 -2.8816 -3.6417 35 1 2.9329 -2.3615 -4.8828 36 1 3.4383 -2.5128 -6.5830 37 1 4.0558 -3.6552 -5.3661 38 1 5.3686 0.4168 -5.3375 39 1 4.2051 -0.1344 -6.5663 40 1 3.6996 0.0165 -4.8661 41 1 4.6389 -1.5725 -9.0258 42 1 4.3532 0.6835 0.8525 43 1 4.5623 -0.3356 2.2968 44 1 5.5262 -0.6551 0.8349 45 1 2.8521 0.9481 2.1881 46 1 1.2507 0.4230 2.7609 47 1 2.7075 -0.4812 3.2391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416722699.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:01 Heat of formation + Delta-G solvation = -60.808418 kcal Electronic energy + Delta-G solvation = -23631.470963 eV Core-core repulsion = 20426.999997 eV Total energy + Delta-G solvation = -3204.470966 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.59080 -39.57381 -38.01679 -35.15295 -34.20930 -33.52574 -32.44308 -29.05635 -27.78211 -27.58612 -27.32493 -26.37857 -25.64097 -22.67586 -21.22181 -20.62001 -20.06547 -19.08151 -17.80437 -17.27813 -16.82186 -16.63432 -16.15099 -15.53580 -15.15741 -14.99953 -14.83583 -14.72113 -14.32695 -14.02956 -13.77840 -13.48226 -13.31566 -13.20999 -13.12298 -12.92231 -12.81505 -12.70425 -12.56869 -12.49522 -12.28260 -12.17997 -12.14225 -11.58994 -11.51248 -11.50237 -11.29198 -11.14913 -11.03661 -10.71332 -10.40898 -10.10981 -9.44284 -8.02826 -6.18480 1.41439 1.45233 1.54814 1.67886 2.17363 2.45823 3.10988 3.20705 3.52233 3.57905 3.86367 4.14812 4.32601 4.39164 4.39922 4.50677 4.52741 4.56285 4.66126 4.68390 4.72079 4.78051 4.87993 4.92382 4.97925 5.03239 5.03323 5.09746 5.14969 5.17636 5.23315 5.26364 5.29161 5.36443 5.46459 5.51717 5.60869 5.62308 5.65272 5.66828 6.12251 6.12844 6.20345 6.42857 6.85294 7.04824 7.49178 7.61524 8.96556 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032288 B = 0.003758 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.986556 B = 7449.914695 C = 8006.942801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 H 0.084 0.916 4 C 0.093 3.907 5 N -0.635 5.635 6 C 0.710 3.290 7 O -0.637 6.637 8 N -0.726 5.726 9 C 0.168 3.832 10 C 0.052 3.948 11 C -0.117 4.117 12 C -0.117 4.117 13 C -0.529 4.529 14 H 0.044 0.956 15 C 0.029 3.971 16 N -0.899 5.899 17 Si 0.947 3.053 18 H -0.276 1.276 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.147 3.853 22 H 0.056 0.944 23 C -0.155 4.155 24 C -0.085 4.085 25 H 0.095 0.905 26 C -0.139 4.139 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.402 0.598 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.064 0.936 37 H 0.017 0.983 38 H 0.017 0.983 39 H 0.064 0.936 40 H 0.032 0.968 41 H 0.261 0.739 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.031 0.969 45 H 0.058 0.942 46 H 0.075 0.925 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.420 4.963 17.761 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.109 4.109 3 H 0.102 0.898 4 C -0.029 4.029 5 N -0.373 5.373 6 C 0.412 3.588 7 O -0.520 6.520 8 N -0.381 5.381 9 C 0.044 3.956 10 C 0.051 3.949 11 C -0.175 4.175 12 C -0.175 4.175 13 C -0.567 4.567 14 H 0.062 0.938 15 C -0.171 4.171 16 N -0.537 5.537 17 Si 0.773 3.227 18 H -0.201 1.201 19 H -0.206 1.206 20 H -0.206 1.206 21 C 0.044 3.956 22 H 0.074 0.926 23 C -0.213 4.213 24 C -0.104 4.104 25 H 0.114 0.886 26 C -0.196 4.196 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.239 0.761 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.108 0.892 44 H 0.051 0.949 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.661 4.708 17.840 21.827 hybrid contribution 0.913 -0.344 -1.257 1.591 sum -10.748 4.364 16.583 20.237 Atomic orbital electron populations 1.21680 0.91811 1.02735 1.03068 1.22339 0.97397 0.98737 0.92436 0.89786 1.22588 0.82457 0.98875 0.98998 1.47704 1.11959 1.70897 1.06702 1.15751 0.83090 0.78470 0.81475 1.90831 1.27614 1.57164 1.76342 1.45251 1.17201 1.72152 1.03540 1.21130 0.87324 0.97421 0.89736 1.18365 0.94403 0.93614 0.88499 1.21637 0.96765 0.97153 1.01932 1.21634 0.97526 0.96402 1.01899 1.21279 0.97980 1.45766 0.91692 0.93805 1.25448 0.97669 0.94903 0.99057 1.69907 1.23795 1.47809 1.12224 0.85685 0.80140 0.77843 0.79002 1.20108 1.20624 1.20605 1.21593 0.97276 0.98890 0.77844 0.92559 1.22163 0.98054 0.99042 1.02062 1.22309 0.92981 0.99403 0.95687 0.88636 1.21837 1.02892 0.99134 0.95753 0.90679 0.91877 0.91963 0.91028 0.90570 0.76083 0.94828 0.94819 0.94851 0.91686 0.96405 0.96398 0.91701 0.94864 0.92972 0.92513 0.89244 0.94946 0.92256 0.90637 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.31 71.98 0.67 -0.70 16 2 C -0.09 -1.32 3.08 -9.48 -0.03 -1.35 16 3 H 0.08 1.28 8.05 -2.38 -0.02 1.26 16 4 C 0.09 1.94 6.03 86.78 0.52 2.46 16 5 N -0.64 -18.36 3.08 -806.31 -2.49 -20.85 16 6 C 0.71 27.54 8.27 179.06 1.48 29.02 16 7 O -0.64 -29.91 15.23 -4.01 -0.06 -29.97 16 8 N -0.73 -27.84 4.92 -478.52 -2.35 -30.19 16 9 C 0.17 7.67 4.50 86.38 0.39 8.06 16 10 C 0.05 2.48 0.50 -52.93 -0.03 2.46 16 11 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 12 C -0.12 -5.34 8.08 71.98 0.58 -4.75 16 13 C -0.53 -28.64 8.01 25.60 0.21 -28.43 16 14 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 15 C 0.03 1.55 5.15 84.65 0.44 1.98 16 16 N -0.90 -48.22 9.35 21.45 0.20 -48.02 16 17 Si 0.95 43.14 29.54 68.60 2.03 45.16 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 C 0.15 3.52 3.44 45.34 0.16 3.68 16 22 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 23 C -0.16 -3.77 7.91 71.98 0.57 -3.20 16 24 C -0.08 -1.26 2.94 -9.61 -0.03 -1.29 16 25 H 0.10 1.24 8.04 -2.38 -0.02 1.22 16 26 C -0.14 -1.53 8.00 71.98 0.58 -0.96 16 27 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.61 8.07 -2.39 -0.02 0.59 16 30 H 0.07 1.51 7.31 -2.38 -0.02 1.49 16 31 H 0.08 1.46 7.98 -2.39 -0.02 1.44 16 32 H 0.40 13.63 4.65 -92.71 -0.43 13.20 16 33 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.03 1.29 6.86 -2.38 -0.02 1.27 16 36 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 37 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 40 H 0.03 1.28 6.86 -2.39 -0.02 1.26 16 41 H 0.26 13.40 8.31 -92.71 -0.77 12.62 16 42 H 0.06 1.33 7.53 -2.39 -0.02 1.31 16 43 H 0.09 1.63 6.73 -2.39 -0.02 1.62 16 44 H 0.03 1.04 6.74 -2.38 -0.02 1.03 16 45 H 0.06 0.72 6.54 -2.39 -0.02 0.71 16 46 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.06 0.66 7.67 -2.39 -0.02 0.64 16 Total: -1.00 -64.57 353.11 3.91 -60.66 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.50 Total: 21.00 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 6.08 Total: 2.20 kcal Atomic # 7 Polarization: -94.43 SS G_CDS: -4.64 Total: -99.06 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.06 Total: -29.97 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -64.57 3.91 -60.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416722699.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.148 kcal (2) G-P(sol) polarization free energy of solvation -64.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds