Wall clock time and date at job start Tue Mar 31 2020 05:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46888 * 2 1 4 4 C 1.50693 * 109.47114 * 239.99746 * 2 1 3 5 5 O 1.21285 * 119.99833 * 263.05012 * 4 2 1 6 6 N 1.34778 * 120.00188 * 83.05251 * 4 2 1 7 7 C 1.46496 * 120.00000 * 3.47557 * 6 4 2 8 8 C 1.46501 * 120.00255 * 183.47419 * 6 4 2 9 9 C 1.50706 * 109.46717 * 89.99803 * 8 6 4 10 10 H 1.08002 * 120.00080 * 0.02562 * 9 8 6 11 11 C 1.37884 * 119.99800 * 179.97438 * 9 8 6 12 12 N 1.31506 * 120.00107 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99813 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47070 * 90.00019 * 13 11 9 15 15 H 1.48496 * 109.47013 * 209.99790 * 13 11 9 16 16 H 1.48501 * 109.47360 * 329.99785 * 13 11 9 17 17 N 1.46904 * 109.46735 * 119.99704 * 2 1 3 18 18 C 1.48533 * 110.99599 * 173.91191 * 17 2 1 19 19 C 1.54936 * 103.22768 * 159.72311 * 18 17 2 20 20 H 1.08994 * 110.72417 * 81.11883 * 19 18 17 21 21 C 1.53005 * 110.72485 * 204.23005 * 19 18 17 22 22 C 1.54593 * 102.91727 * 322.58174 * 19 18 17 23 23 H 1.09005 * 110.30597 * 140.87696 * 22 19 18 24 24 C 1.52998 * 110.31192 * 263.03917 * 22 19 18 25 25 C 1.47896 * 111.00215 * 291.30568 * 17 2 1 26 26 H 1.08998 * 109.91786 * 94.80482 * 25 17 2 27 27 C 1.53008 * 109.91637 * 333.71049 * 25 17 2 28 28 H 1.08998 * 109.47049 * 303.92804 * 1 2 3 29 29 H 1.08999 * 109.46687 * 63.92828 * 1 2 3 30 30 H 1.09001 * 109.46906 * 183.92504 * 1 2 3 31 31 H 1.08999 * 109.47353 * 86.88864 * 7 6 4 32 32 H 1.09001 * 109.47620 * 206.89216 * 7 6 4 33 33 H 1.09005 * 109.47114 * 326.88861 * 7 6 4 34 34 H 1.08999 * 109.47279 * 209.99773 * 8 6 4 35 35 H 1.09002 * 109.47167 * 330.00444 * 8 6 4 36 36 H 0.97002 * 120.00258 * 180.02562 * 12 11 9 37 37 H 1.09002 * 110.66940 * 278.15279 * 18 17 2 38 38 H 1.09001 * 110.66878 * 41.28488 * 18 17 2 39 39 H 1.09001 * 109.46998 * 58.53905 * 21 19 18 40 40 H 1.09001 * 109.47175 * 178.54713 * 21 19 18 41 41 H 1.09001 * 109.46665 * 298.54058 * 21 19 18 42 42 H 1.09003 * 109.47625 * 175.71903 * 24 22 19 43 43 H 1.08996 * 109.47868 * 295.71929 * 24 22 19 44 44 H 1.08998 * 109.47087 * 55.72114 * 24 22 19 45 45 H 1.08994 * 109.47105 * 64.98697 * 27 25 17 46 46 H 1.09002 * 109.46705 * 184.99043 * 27 25 17 47 47 H 1.09003 * 109.46649 * 304.98535 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.3543 -1.8781 -1.1674 6 7 2.1239 -0.0483 -2.4007 7 6 1.8078 1.3809 -2.4604 8 6 2.5395 -0.7578 -3.6132 9 6 1.3248 -1.3130 -4.3115 10 1 0.3417 -1.1530 -3.8941 11 6 1.4686 -2.0244 -5.4839 12 7 0.4087 -2.5085 -6.0935 13 14 3.1691 -2.3006 -6.2062 14 1 3.7390 -3.5598 -5.6632 15 1 3.0688 -2.3996 -7.6844 16 1 4.0512 -1.1618 -5.8451 17 7 2.0196 -0.6925 1.1995 18 6 3.4971 -0.8410 1.1626 19 6 3.8669 -1.0771 2.6485 20 1 3.7039 -2.1185 2.9258 21 6 5.3165 -0.6677 2.9173 22 6 2.8875 -0.1469 3.4004 23 1 2.5264 -0.6317 4.3075 24 6 3.5704 1.1790 3.7417 25 6 1.7233 0.0881 2.4203 26 1 0.7891 -0.2565 2.8637 27 6 1.6189 1.5752 2.0755 28 1 -0.3633 0.5736 0.8527 29 1 -0.3633 0.4517 -0.9231 30 1 -0.3633 -1.0253 0.0703 31 1 2.6982 1.9604 -2.2165 32 1 1.4715 1.6371 -3.4651 33 1 1.0185 1.6087 -1.7440 34 1 3.0573 -0.0672 -4.2789 35 1 3.2092 -1.5748 -3.3447 36 1 0.5099 -3.0093 -6.9181 37 1 3.7824 -1.6992 0.5541 38 1 3.9660 0.0695 0.7893 39 1 5.4505 0.3834 2.6620 40 1 5.5468 -0.8178 3.9721 41 1 5.9848 -1.2774 2.3092 42 1 2.8475 1.8521 4.2027 43 1 4.3912 0.9971 4.4354 44 1 3.9590 1.6327 2.8300 45 1 0.7636 1.7369 1.4195 46 1 1.4888 2.1521 2.9911 47 1 2.5300 1.8958 1.5704 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419389910.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:46 Heat of formation + Delta-G solvation = -17.789272 kcal Electronic energy + Delta-G solvation = -24234.780621 eV Core-core repulsion = 21032.175105 eV Total energy + Delta-G solvation = -3202.605516 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.61841 -38.64434 -34.97105 -34.76246 -32.51621 -32.17160 -30.57292 -28.39919 -27.69752 -26.09723 -25.83116 -24.94055 -23.63205 -21.70135 -20.12366 -18.59509 -18.08941 -17.21614 -16.92460 -16.23002 -15.78720 -14.90308 -14.71134 -14.59007 -14.09115 -13.75280 -13.54463 -13.26121 -12.97744 -12.90162 -12.74055 -12.45176 -12.33741 -12.20725 -12.13723 -11.89271 -11.70572 -11.48454 -11.47126 -11.25695 -11.02673 -10.92061 -10.82519 -10.59020 -10.50175 -10.40803 -10.31760 -10.11936 -9.51550 -8.84113 -8.57341 -8.17104 -7.65134 -6.07145 -4.05727 3.30206 3.36103 3.37068 3.38216 3.67940 4.16484 4.41053 4.50296 4.52159 4.75046 4.99121 5.09427 5.14993 5.22114 5.25693 5.30806 5.34105 5.34935 5.38151 5.43119 5.55283 5.61760 5.64021 5.66621 5.75360 5.81610 5.84564 5.86547 5.87128 5.98376 6.01884 6.10229 6.17098 6.21076 6.33829 6.36745 6.49607 6.69370 6.94601 7.04401 7.14292 7.38833 7.62845 8.28676 8.49171 8.95455 9.05062 9.53395 11.06292 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025988 B = 0.004584 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.143223 B = 6106.280227 C = 6569.769664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.053 3.947 3 H 0.066 0.934 4 C 0.512 3.488 5 O -0.524 6.524 6 N -0.600 5.600 7 C 0.081 3.919 8 C 0.216 3.784 9 C -0.528 4.528 10 H 0.074 0.926 11 C 0.073 3.927 12 N -0.898 5.898 13 Si 0.876 3.124 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.266 1.266 17 N -0.487 5.487 18 C 0.040 3.960 19 C -0.092 4.092 20 H 0.082 0.918 21 C -0.144 4.144 22 C -0.094 4.094 23 H 0.076 0.924 24 C -0.144 4.144 25 C 0.066 3.934 26 H 0.085 0.915 27 C -0.185 4.185 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.028 0.972 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.096 0.904 38 H 0.036 0.964 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.655 10.998 18.799 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.059 4.059 3 H 0.083 0.917 4 C 0.298 3.702 5 O -0.399 6.399 6 N -0.333 5.333 7 C -0.063 4.063 8 C 0.096 3.904 9 C -0.567 4.567 10 H 0.092 0.908 11 C -0.130 4.130 12 N -0.536 5.536 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.191 1.191 17 N -0.211 5.211 18 C -0.088 4.088 19 C -0.111 4.111 20 H 0.101 0.899 21 C -0.202 4.202 22 C -0.113 4.113 23 H 0.094 0.906 24 C -0.201 4.201 25 C -0.042 4.042 26 H 0.103 0.897 27 C -0.243 4.243 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.504 9.756 18.634 21.742 hybrid contribution 1.024 0.680 -0.692 1.411 sum 6.529 10.437 17.943 21.760 Atomic orbital electron populations 1.21817 0.92220 1.03768 1.01961 1.21894 0.97550 0.96460 0.89989 0.91670 1.20148 0.78839 0.87276 0.83981 1.90646 1.48369 1.16091 1.84806 1.47827 1.66886 1.09208 1.09339 1.21705 0.99233 0.81936 1.03420 1.19651 0.96687 0.92567 0.81530 1.21339 0.93738 1.34265 1.07328 0.90754 1.24853 0.96657 0.94888 0.96577 1.69894 1.28896 1.36440 1.18383 0.86853 0.85018 0.79470 0.78355 1.19885 1.21080 1.19130 1.64811 1.12143 1.44061 1.00122 1.23354 0.87553 1.01372 0.96506 1.22086 0.94308 0.99809 0.94854 0.89946 1.21851 0.95589 1.01530 1.01196 1.22020 0.95025 0.96142 0.98156 0.90552 1.22021 1.00192 0.96720 1.01215 1.22500 0.98817 0.91672 0.91242 0.89654 1.22659 1.02172 0.97305 1.02167 0.91774 0.91481 0.90912 0.93976 0.90404 0.92156 0.95362 0.94568 0.92579 0.88551 0.94552 0.92343 0.92635 0.92643 0.92600 0.92607 0.92446 0.91542 0.91800 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.50 37.16 0.32 -1.73 16 2 C 0.05 0.83 1.00 -68.86 -0.07 0.77 16 3 H 0.07 0.90 4.49 -51.93 -0.23 0.66 16 4 C 0.51 10.72 6.14 -10.99 -0.07 10.66 16 5 O -0.52 -13.18 14.46 5.55 0.08 -13.10 16 6 N -0.60 -12.60 2.86 -182.95 -0.52 -13.12 16 7 C 0.08 1.27 9.86 59.84 0.59 1.86 16 8 C 0.22 5.38 4.24 -5.19 -0.02 5.36 16 9 C -0.53 -15.35 9.94 -34.43 -0.34 -15.69 16 10 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 11 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 12 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 13 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 14 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 17 N -0.49 -7.35 4.85 -216.05 -1.05 -8.40 16 18 C 0.04 0.58 4.93 -1.90 -0.01 0.57 16 19 C -0.09 -1.05 3.59 -88.76 -0.32 -1.37 16 20 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 21 C -0.14 -1.37 8.09 37.16 0.30 -1.07 16 22 C -0.09 -0.94 3.52 -89.27 -0.31 -1.25 16 23 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 24 C -0.14 -1.18 6.69 37.16 0.25 -0.94 16 25 C 0.07 0.75 3.11 -66.64 -0.21 0.55 16 26 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 27 C -0.19 -1.78 6.55 37.16 0.24 -1.54 16 28 H 0.06 0.74 5.90 -51.93 -0.31 0.44 16 29 H 0.07 0.99 6.93 -51.93 -0.36 0.63 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 33 H 0.06 0.81 5.28 -51.93 -0.27 0.53 16 34 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 35 H 0.04 0.97 6.80 -51.93 -0.35 0.61 16 36 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 37 H 0.10 1.73 6.72 -51.93 -0.35 1.38 16 38 H 0.04 0.52 7.93 -51.93 -0.41 0.11 16 39 H 0.06 0.53 6.28 -51.93 -0.33 0.21 16 40 H 0.05 0.45 7.91 -51.93 -0.41 0.04 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.41 6.72 -51.93 -0.35 0.06 16 43 H 0.05 0.42 7.10 -51.93 -0.37 0.05 16 44 H 0.06 0.51 6.04 -51.93 -0.31 0.19 16 45 H 0.07 0.65 4.97 -51.93 -0.26 0.39 16 46 H 0.06 0.51 6.59 -51.93 -0.34 0.17 16 47 H 0.06 0.58 6.25 -51.93 -0.32 0.25 16 LS Contribution 342.29 15.07 5.16 5.16 Total: -1.00 -33.66 342.29 -7.87 -41.54 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -7.89 Total: -0.30 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 0.25 Total: -1.78 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -0.80 Total: -48.67 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.66 -7.87 -41.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419389910.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.747 kcal (2) G-P(sol) polarization free energy of solvation -33.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds