Wall clock time and date at job start Tue Mar 31 2020 05:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47425 * 2 1 4 4 C 1.50698 * 109.46858 * 239.99752 * 2 1 3 5 5 O 1.21280 * 120.00359 * 255.45906 * 4 2 1 6 6 N 1.34776 * 119.99618 * 75.46697 * 4 2 1 7 7 C 1.46501 * 120.00231 * 4.68167 * 6 4 2 8 8 C 1.46509 * 119.99735 * 184.68183 * 6 4 2 9 9 C 1.50700 * 109.47017 * 89.99926 * 8 6 4 10 10 H 1.08006 * 119.99791 * 359.97438 * 9 8 6 11 11 C 1.37877 * 119.99699 * 179.97438 * 9 8 6 12 12 N 1.31514 * 120.00245 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99504 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47122 * 90.00515 * 13 11 9 15 15 H 1.48504 * 109.46998 * 210.00057 * 13 11 9 16 16 H 1.48494 * 109.47575 * 330.00420 * 13 11 9 17 17 N 1.46902 * 109.46852 * 120.00138 * 2 1 3 18 18 C 1.48562 * 110.99936 * 278.05990 * 17 2 1 19 19 C 1.54387 * 104.59243 * 159.04183 * 18 17 2 20 20 H 1.09000 * 110.32075 * 95.04136 * 19 18 17 21 21 C 1.53000 * 110.32501 * 217.15134 * 19 18 17 22 22 C 1.54261 * 105.06145 * 336.15105 * 19 18 17 23 23 H 1.09003 * 110.32507 * 118.99611 * 22 19 18 24 24 C 1.52998 * 110.32460 * 241.10535 * 22 19 18 25 25 C 1.48558 * 111.00348 * 33.48527 * 17 2 1 26 26 H 1.09001 * 110.40526 * 319.73863 * 25 17 2 27 27 C 1.52996 * 110.41248 * 82.17791 * 25 17 2 28 28 H 1.09001 * 109.47282 * 172.63833 * 1 2 3 29 29 H 1.08998 * 109.46923 * 292.63523 * 1 2 3 30 30 H 1.08994 * 109.47018 * 52.63400 * 1 2 3 31 31 H 1.08998 * 109.47148 * 89.55056 * 7 6 4 32 32 H 1.09000 * 109.47150 * 209.54693 * 7 6 4 33 33 H 1.08996 * 109.46994 * 329.54700 * 7 6 4 34 34 H 1.09002 * 109.46722 * 209.99683 * 8 6 4 35 35 H 1.08996 * 109.46863 * 329.99608 * 8 6 4 36 36 H 0.97001 * 119.99890 * 179.97438 * 12 11 9 37 37 H 1.08992 * 110.41272 * 277.81801 * 18 17 2 38 38 H 1.08999 * 110.40595 * 40.26896 * 18 17 2 39 39 H 1.08999 * 109.46666 * 58.54823 * 21 19 18 40 40 H 1.08992 * 109.47127 * 178.54704 * 21 19 18 41 41 H 1.08997 * 109.46989 * 298.54994 * 21 19 18 42 42 H 1.09005 * 109.47191 * 58.54336 * 24 22 19 43 43 H 1.08995 * 109.47285 * 178.54834 * 24 22 19 44 44 H 1.09003 * 109.47124 * 298.54453 * 24 22 19 45 45 H 1.08997 * 109.47188 * 49.51897 * 27 25 17 46 46 H 1.09008 * 109.47196 * 169.52218 * 27 25 17 47 47 H 1.09001 * 109.47474 * 289.51936 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.4830 -1.8328 -1.1411 6 7 1.9807 -0.0985 -2.4301 7 6 1.5326 1.2932 -2.5239 8 6 2.3728 -0.8249 -3.6405 9 6 1.1676 -1.5167 -4.2237 10 1 0.2059 -1.4247 -3.7407 11 6 1.2927 -2.2669 -5.3737 12 7 2.4639 -2.3793 -5.9614 13 14 -0.2011 -3.1249 -6.0961 14 1 -0.8759 -2.2174 -7.0584 15 1 0.2295 -4.3601 -6.7992 16 1 -1.1441 -3.4794 -5.0053 17 7 2.0196 -0.6925 1.1995 18 6 2.0137 0.2133 2.3769 19 6 2.0135 -0.7337 3.5962 20 1 3.0313 -0.8917 3.9529 21 6 1.1423 -0.1592 4.7151 22 6 1.4168 -2.0574 3.0756 23 1 2.1410 -2.8656 3.1784 24 6 0.1323 -2.3963 3.8347 25 6 1.1065 -1.7990 1.5855 26 1 0.0672 -1.4951 1.4606 27 6 1.4018 -3.0491 0.7543 28 1 -0.3634 -1.0192 -0.1317 29 1 -0.3633 0.3955 0.9485 30 1 -0.3633 0.6237 -0.8167 31 1 2.3893 1.9587 -2.4175 32 1 1.0621 1.4589 -3.4930 33 1 0.8132 1.4974 -1.7310 34 1 2.7776 -0.1235 -4.3701 35 1 3.1313 -1.5663 -3.3895 36 1 2.5519 -2.9074 -6.7702 37 1 2.9071 0.8377 2.3807 38 1 1.1163 0.8320 2.3760 39 1 0.1259 -0.0179 4.3478 40 1 1.1313 -0.8501 5.5580 41 1 1.5492 0.7995 5.0365 42 1 -0.5862 -1.5856 3.7132 43 1 -0.2910 -3.3193 3.4388 44 1 0.3590 -2.5252 4.8931 45 1 2.4719 -3.2553 0.7758 46 1 0.8596 -3.8984 1.1702 47 1 1.0842 -2.8843 -0.2753 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419389911.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:48 Heat of formation + Delta-G solvation = -20.786059 kcal Electronic energy + Delta-G solvation = -24214.873605 eV Core-core repulsion = 21012.138139 eV Total energy + Delta-G solvation = -3202.735466 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.36451 -38.42404 -34.89624 -34.58563 -32.59280 -31.93493 -30.38084 -28.04049 -27.68045 -26.00348 -25.60475 -24.01092 -23.90053 -22.20068 -19.94878 -19.15559 -17.98519 -16.48735 -16.26715 -15.97986 -15.86116 -14.86724 -14.71002 -14.33678 -14.16970 -13.95346 -13.57231 -13.31037 -12.84563 -12.55492 -12.43340 -12.35190 -12.16198 -11.99650 -11.89279 -11.62989 -11.57066 -11.43027 -11.24502 -11.16438 -10.89996 -10.87855 -10.74048 -10.58937 -10.51755 -10.29725 -10.09244 -9.95158 -9.55977 -8.64911 -8.40873 -8.10218 -7.49877 -6.01239 -4.06176 3.30605 3.37404 3.40803 3.53533 3.78967 4.34489 4.46718 4.53559 4.63578 4.89129 5.06768 5.16160 5.20599 5.25993 5.32087 5.33409 5.36540 5.45688 5.47448 5.58523 5.63613 5.68645 5.73169 5.76249 5.81857 5.85019 5.90304 5.97649 6.09055 6.09693 6.17325 6.21794 6.27227 6.34078 6.39707 6.64115 6.97227 7.05621 7.24329 7.27223 7.52865 7.65100 7.96488 8.27844 8.54255 8.94967 9.25727 9.59305 11.06532 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025496 B = 0.004540 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.955410 B = 6165.319085 C = 6620.399155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.053 3.947 3 H 0.091 0.909 4 C 0.513 3.487 5 O -0.515 6.515 6 N -0.606 5.606 7 C 0.079 3.921 8 C 0.247 3.753 9 C -0.525 4.525 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.894 5.894 13 Si 0.896 3.104 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.275 1.275 17 N -0.483 5.483 18 C 0.035 3.965 19 C -0.092 4.092 20 H 0.077 0.923 21 C -0.144 4.144 22 C -0.090 4.090 23 H 0.078 0.922 24 C -0.144 4.144 25 C 0.060 3.940 26 H 0.060 0.940 27 C -0.129 4.129 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.029 0.971 35 H 0.045 0.955 36 H 0.263 0.737 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.036 0.964 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.467 7.166 18.628 20.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.060 4.060 3 H 0.109 0.891 4 C 0.298 3.702 5 O -0.390 6.390 6 N -0.339 5.339 7 C -0.065 4.065 8 C 0.128 3.872 9 C -0.564 4.564 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.533 5.533 13 Si 0.724 3.276 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.200 1.200 17 N -0.207 5.207 18 C -0.093 4.093 19 C -0.111 4.111 20 H 0.095 0.905 21 C -0.202 4.202 22 C -0.109 4.109 23 H 0.097 0.903 24 C -0.201 4.201 25 C -0.047 4.047 26 H 0.078 0.922 27 C -0.186 4.186 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.085 0.915 46 H 0.055 0.945 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.571 6.281 18.347 19.718 hybrid contribution -1.633 0.043 -0.474 1.701 sum -5.204 6.324 17.873 19.660 Atomic orbital electron populations 1.22374 0.95522 1.03585 1.02092 1.21771 0.94276 0.98303 0.91622 0.89057 1.19974 0.79878 0.86714 0.83594 1.90647 1.44533 1.18558 1.85287 1.48105 1.65271 1.12324 1.08237 1.21725 0.98567 0.83507 1.02713 1.19243 0.96327 0.91915 0.79738 1.21441 0.95181 1.30655 1.09085 0.92607 1.24929 0.96030 0.96294 0.96820 1.69937 1.22863 1.40752 1.19774 0.86533 0.82847 0.79161 0.79083 1.20699 1.21093 1.19958 1.65319 1.46931 1.07441 1.00994 1.23204 1.00688 0.95226 0.90189 1.21885 0.99824 0.94818 0.94612 0.90469 1.21938 0.99747 1.00367 0.98101 1.21984 0.97313 0.97360 0.94292 0.90320 1.21936 0.97129 1.01248 0.99810 1.22909 0.95075 0.93180 0.93580 0.92193 1.21846 1.02551 0.93721 1.00528 0.91056 0.92206 0.91047 0.93983 0.90920 0.92377 0.95260 0.93741 0.92762 0.90446 0.93904 0.92450 0.92362 0.93030 0.92641 0.92801 0.92499 0.91506 0.94524 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 7.46 37.16 0.28 -2.17 16 2 C 0.05 0.83 1.84 -68.86 -0.13 0.71 16 3 H 0.09 1.28 7.05 -51.93 -0.37 0.91 16 4 C 0.51 10.79 6.64 -10.99 -0.07 10.72 16 5 O -0.51 -12.76 11.77 5.56 0.07 -12.70 16 6 N -0.61 -13.02 2.86 -182.95 -0.52 -13.54 16 7 C 0.08 1.28 9.96 59.85 0.60 1.88 16 8 C 0.25 6.55 5.20 -5.19 -0.03 6.52 16 9 C -0.52 -14.89 9.39 -34.44 -0.32 -15.21 16 10 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 13 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 16 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 17 N -0.48 -7.40 4.75 -215.61 -1.02 -8.43 16 18 C 0.03 0.41 5.80 -2.18 -0.01 0.40 16 19 C -0.09 -0.97 3.65 -89.23 -0.33 -1.30 16 20 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 21 C -0.14 -1.18 7.93 37.16 0.29 -0.89 16 22 C -0.09 -1.06 3.20 -89.24 -0.29 -1.35 16 23 H 0.08 0.99 7.86 -51.93 -0.41 0.58 16 24 C -0.14 -1.39 7.93 37.16 0.29 -1.09 16 25 C 0.06 0.88 1.83 -66.07 -0.12 0.75 16 26 H 0.06 0.84 4.83 -51.93 -0.25 0.59 16 27 C -0.13 -2.25 7.62 37.16 0.28 -1.97 16 28 H 0.07 1.11 6.50 -51.93 -0.34 0.78 16 29 H 0.06 0.68 6.83 -51.93 -0.35 0.33 16 30 H 0.07 0.94 6.14 -51.93 -0.32 0.62 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 33 H 0.06 0.77 4.55 -51.93 -0.24 0.54 16 34 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 35 H 0.04 1.33 7.36 -51.93 -0.38 0.95 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.46 6.73 -51.93 -0.35 0.11 16 39 H 0.06 0.47 6.59 -51.93 -0.34 0.13 16 40 H 0.06 0.44 7.02 -51.93 -0.36 0.07 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.05 0.51 6.62 -51.93 -0.34 0.17 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.47 6.97 -51.93 -0.36 0.11 16 45 H 0.07 1.29 7.78 -51.93 -0.40 0.88 16 46 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 47 H 0.08 1.60 5.76 -51.93 -0.30 1.30 16 LS Contribution 347.12 15.07 5.23 5.23 Total: -1.00 -32.09 347.12 -8.22 -40.31 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -8.04 Total: -0.37 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 0.35 Total: -1.34 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.81 Total: -48.02 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.07 Total: -12.70 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.09 -8.22 -40.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419389911.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.520 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds