Wall clock time and date at job start Tue Mar 31 2020 05:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47041 * 2 1 4 4 C 1.50703 * 109.47408 * 240.00188 * 2 1 3 5 5 O 1.21280 * 119.99867 * 239.99840 * 4 2 1 6 6 N 1.34778 * 119.99730 * 59.99904 * 4 2 1 7 7 C 1.46491 * 120.00299 * 359.97438 * 6 4 2 8 8 C 1.46499 * 119.99714 * 180.02562 * 6 4 2 9 9 C 1.50706 * 109.47261 * 89.99778 * 8 6 4 10 10 H 1.08001 * 119.99480 * 0.02562 * 9 8 6 11 11 C 1.37870 * 120.00069 * 180.02562 * 9 8 6 12 12 N 1.31514 * 120.00126 * 0.02562 * 11 9 8 13 13 Si 1.86809 * 119.99812 * 180.27610 * 11 9 8 14 14 H 1.48498 * 109.46984 * 179.72176 * 13 11 9 15 15 H 1.48492 * 109.46885 * 299.72396 * 13 11 9 16 16 H 1.48499 * 109.46902 * 59.72370 * 13 11 9 17 17 N 1.46898 * 109.47417 * 119.99653 * 2 1 3 18 18 C 1.48555 * 111.00284 * 283.12251 * 17 2 1 19 19 C 1.54381 * 104.59498 * 159.03534 * 18 17 2 20 20 H 1.09006 * 110.32009 * 95.04439 * 19 18 17 21 21 C 1.53004 * 110.32312 * 217.14622 * 19 18 17 22 22 C 1.54253 * 105.06201 * 336.14484 * 19 18 17 23 23 H 1.08993 * 110.32663 * 241.00111 * 22 19 18 24 24 C 1.53004 * 110.32324 * 118.89694 * 22 19 18 25 25 C 1.48567 * 110.99500 * 38.53607 * 17 2 1 26 26 H 1.08991 * 110.41299 * 319.74054 * 25 17 2 27 27 C 1.53007 * 110.40728 * 82.18372 * 25 17 2 28 28 H 1.08996 * 109.46956 * 49.36566 * 1 2 3 29 29 H 1.09006 * 109.46762 * 169.36439 * 1 2 3 30 30 H 1.08998 * 109.47379 * 289.36545 * 1 2 3 31 31 H 1.09007 * 109.47678 * 270.00434 * 7 6 4 32 32 H 1.09001 * 109.47311 * 30.00322 * 7 6 4 33 33 H 1.09000 * 109.47550 * 150.00335 * 7 6 4 34 34 H 1.09004 * 109.47141 * 330.00408 * 8 6 4 35 35 H 1.08993 * 109.47126 * 209.99694 * 8 6 4 36 36 H 0.97000 * 119.99594 * 180.02562 * 12 11 9 37 37 H 1.09003 * 110.40932 * 277.81557 * 18 17 2 38 38 H 1.09002 * 110.41417 * 40.13994 * 18 17 2 39 39 H 1.09001 * 109.47129 * 58.54957 * 21 19 18 40 40 H 1.09000 * 109.47133 * 178.54852 * 21 19 18 41 41 H 1.08999 * 109.47073 * 298.54737 * 21 19 18 42 42 H 1.08993 * 109.47134 * 61.45109 * 24 22 19 43 43 H 1.08998 * 109.46890 * 181.45896 * 24 22 19 44 44 H 1.09005 * 109.46808 * 301.44938 * 24 22 19 45 45 H 1.08996 * 109.47644 * 49.94926 * 27 25 17 46 46 H 1.09002 * 109.46616 * 169.95435 * 27 25 17 47 47 H 1.08998 * 109.47029 * 289.94651 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7297 -1.6964 -1.1192 6 7 1.7068 -0.2498 -2.4546 7 6 0.8641 0.9409 -2.5890 8 6 2.1947 -0.9407 -3.6507 9 6 1.2017 -1.9976 -4.0607 10 1 0.2973 -2.1400 -3.4877 11 6 1.4476 -2.7826 -5.1671 12 7 2.5491 -2.6094 -5.8645 13 14 0.2130 -4.0874 -5.6797 14 1 0.7053 -4.7844 -6.8950 15 1 0.0456 -5.0700 -4.5790 16 1 -1.0934 -3.4448 -5.9726 17 7 2.0197 -0.6924 1.1994 18 6 1.9004 0.1739 2.4003 19 6 1.9195 -0.8078 3.5917 20 1 2.9309 -0.9037 3.9869 21 6 0.9644 -0.3317 4.6880 22 6 1.4419 -2.1540 3.0094 23 1 0.5267 -2.4775 3.5051 24 6 2.5323 -3.2163 3.1631 25 6 1.1743 -1.8725 1.5153 26 1 0.1216 -1.6399 1.3549 27 6 1.5929 -3.0722 0.6629 28 1 -0.3633 0.6692 -0.7799 29 1 -0.3633 -1.0101 -0.1897 30 1 -0.3634 0.3408 0.9695 31 1 -0.1838 0.6426 -2.6225 32 1 1.0272 1.5996 -1.7360 33 1 1.1217 1.4665 -3.5085 34 1 3.1548 -1.4091 -3.4336 35 1 2.3160 -0.2222 -4.4613 36 1 2.7219 -3.1615 -6.6431 37 1 2.7452 0.8601 2.4595 38 1 0.9622 0.7283 2.3775 39 1 -0.0440 -0.2519 4.2819 40 1 0.9694 -1.0473 5.5102 41 1 1.2873 0.6433 5.0530 42 1 2.7464 -3.3668 4.2211 43 1 2.1906 -4.1538 2.7245 44 1 3.4368 -2.8849 2.6528 45 1 2.6724 -3.2069 0.7303 46 1 1.0914 -3.9690 1.0268 47 1 1.3130 -2.8955 -0.3755 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419389912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:50 Heat of formation + Delta-G solvation = -20.993310 kcal Electronic energy + Delta-G solvation = -24339.784197 eV Core-core repulsion = 21137.039744 eV Total energy + Delta-G solvation = -3202.744453 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.36581 -38.38643 -34.76361 -34.52576 -32.59180 -32.40753 -29.94557 -28.14325 -27.52359 -26.13325 -25.20343 -24.61809 -23.59340 -21.91950 -20.28803 -19.16216 -17.92560 -16.54045 -16.43029 -15.99063 -15.37828 -14.97796 -14.52977 -14.24703 -14.05473 -13.87993 -13.44171 -13.18852 -13.09762 -12.87657 -12.46478 -12.26238 -12.19608 -11.97990 -11.79961 -11.73007 -11.37606 -11.23139 -11.21197 -11.13644 -10.94872 -10.87585 -10.71906 -10.51341 -10.43450 -10.25787 -10.06811 -10.00167 -9.54988 -8.65152 -8.39574 -8.10550 -7.50713 -6.00339 -4.04877 3.33269 3.37807 3.39999 3.57076 3.78561 4.32523 4.47659 4.58061 4.65235 4.88176 5.06654 5.21604 5.24778 5.27252 5.31420 5.34624 5.41861 5.49026 5.53347 5.61503 5.64223 5.72445 5.79226 5.82681 5.85086 5.93455 5.97291 6.00505 6.10735 6.16843 6.19179 6.22311 6.28059 6.35766 6.47538 6.66636 6.98731 7.05284 7.25370 7.28403 7.51079 7.64525 7.96729 8.28476 8.53072 8.95555 9.25436 9.60330 11.07528 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023446 B = 0.004833 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.959010 B = 5791.910607 C = 6344.466507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.053 3.947 3 H 0.094 0.906 4 C 0.510 3.490 5 O -0.510 6.510 6 N -0.606 5.606 7 C 0.086 3.914 8 C 0.248 3.752 9 C -0.523 4.523 10 H 0.055 0.945 11 C 0.062 3.938 12 N -0.895 5.895 13 Si 0.896 3.104 14 H -0.286 1.286 15 H -0.277 1.277 16 H -0.278 1.278 17 N -0.479 5.479 18 C 0.034 3.966 19 C -0.093 4.093 20 H 0.079 0.921 21 C -0.142 4.142 22 C -0.088 4.088 23 H 0.070 0.930 24 C -0.139 4.139 25 C 0.060 3.940 26 H 0.056 0.944 27 C -0.130 4.130 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.029 0.971 36 H 0.263 0.737 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.044 0.956 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.037 0.963 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.660 7.191 17.809 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.059 4.059 3 H 0.112 0.888 4 C 0.295 3.705 5 O -0.385 6.385 6 N -0.340 5.340 7 C -0.059 4.059 8 C 0.129 3.871 9 C -0.562 4.562 10 H 0.073 0.927 11 C -0.140 4.140 12 N -0.534 5.534 13 Si 0.723 3.277 14 H -0.212 1.212 15 H -0.202 1.202 16 H -0.203 1.203 17 N -0.202 5.202 18 C -0.094 4.094 19 C -0.112 4.112 20 H 0.098 0.902 21 C -0.200 4.200 22 C -0.107 4.107 23 H 0.088 0.912 24 C -0.196 4.196 25 C -0.048 4.048 26 H 0.074 0.926 27 C -0.188 4.188 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.056 0.944 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.602 6.438 17.553 19.040 hybrid contribution -1.665 -0.301 -0.343 1.727 sum -5.268 6.137 17.210 19.016 Atomic orbital electron populations 1.22562 0.95877 1.03709 1.02416 1.21745 0.94056 0.98461 0.91656 0.88768 1.19963 0.81788 0.85073 0.83684 1.90667 1.37050 1.25055 1.85764 1.48100 1.50370 1.28192 1.07314 1.21726 0.95051 0.87831 1.01250 1.19247 0.95976 0.91762 0.80118 1.21384 1.05816 1.17884 1.11110 0.92698 1.24917 0.95532 0.97254 0.96326 1.69923 1.24875 1.40237 1.18414 0.86602 0.81277 0.81860 0.77934 1.21194 1.20217 1.20339 1.65336 1.49360 1.05076 1.00441 1.23203 1.00412 0.95663 0.90144 1.21955 0.99911 0.94595 0.94699 0.90232 1.21850 0.99056 1.00896 0.98201 1.21975 0.98650 0.94977 0.95064 0.91197 1.21855 0.99119 0.98382 1.00263 1.22843 0.95403 0.92401 0.94185 0.92594 1.21899 1.02698 0.94031 1.00137 0.90508 0.91348 0.92321 0.93274 0.92764 0.91658 0.93872 0.95253 0.92727 0.90465 0.93838 0.92859 0.92598 0.92722 0.93698 0.92377 0.91611 0.90918 0.94364 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.51 7.26 37.16 0.27 -2.24 16 2 C 0.05 0.83 1.90 -68.86 -0.13 0.70 16 3 H 0.09 1.31 7.25 -51.93 -0.38 0.93 16 4 C 0.51 10.62 6.33 -10.98 -0.07 10.55 16 5 O -0.51 -12.64 12.17 5.56 0.07 -12.57 16 6 N -0.61 -12.88 2.86 -182.96 -0.52 -13.40 16 7 C 0.09 1.37 8.83 59.84 0.53 1.89 16 8 C 0.25 6.54 5.20 -5.19 -0.03 6.51 16 9 C -0.52 -14.86 9.39 -34.44 -0.32 -15.18 16 10 H 0.05 1.56 7.81 -52.49 -0.41 1.15 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 13 Si 0.90 22.01 29.54 -169.99 -5.02 16.98 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 N -0.48 -7.29 4.71 -215.61 -1.02 -8.31 16 18 C 0.03 0.40 5.81 -2.18 -0.01 0.39 16 19 C -0.09 -0.98 3.30 -89.24 -0.29 -1.28 16 20 H 0.08 0.85 7.71 -51.93 -0.40 0.45 16 21 C -0.14 -1.20 8.91 37.16 0.33 -0.87 16 22 C -0.09 -1.05 3.22 -89.24 -0.29 -1.34 16 23 H 0.07 0.77 7.71 -51.93 -0.40 0.37 16 24 C -0.14 -1.68 7.78 37.16 0.29 -1.39 16 25 C 0.06 0.88 2.34 -66.06 -0.15 0.72 16 26 H 0.06 0.81 5.23 -51.93 -0.27 0.54 16 27 C -0.13 -2.31 6.51 37.16 0.24 -2.07 16 28 H 0.08 0.94 4.91 -51.93 -0.25 0.69 16 29 H 0.07 1.05 6.73 -51.93 -0.35 0.70 16 30 H 0.06 0.66 6.53 -51.93 -0.34 0.32 16 31 H 0.05 0.75 7.20 -51.93 -0.37 0.38 16 32 H 0.05 0.68 5.88 -51.93 -0.31 0.38 16 33 H 0.06 1.01 7.89 -51.93 -0.41 0.60 16 34 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 35 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.47 6.36 -51.93 -0.33 0.14 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.71 6.74 -51.93 -0.35 0.36 16 44 H 0.06 0.91 7.60 -51.93 -0.39 0.52 16 45 H 0.07 1.40 6.56 -51.93 -0.34 1.06 16 46 H 0.04 0.60 7.45 -51.93 -0.39 0.21 16 47 H 0.07 1.53 5.80 -51.93 -0.30 1.23 16 LS Contribution 345.82 15.07 5.21 5.21 Total: -1.00 -32.01 345.82 -8.32 -40.33 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -8.04 Total: -0.23 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 0.26 Total: -1.93 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.80 Total: -47.79 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.07 Total: -12.57 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.01 -8.32 -40.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419389912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.338 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds