Wall clock time and date at job start Tue Mar 31 2020 05:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47553 * 2 1 4 4 C 1.50700 * 109.46872 * 239.99920 * 2 1 3 5 5 O 1.21276 * 120.00454 * 240.00142 * 4 2 1 6 6 N 1.34781 * 119.99927 * 60.00307 * 4 2 1 7 7 C 1.46501 * 119.99643 * 0.02562 * 6 4 2 8 8 C 1.46498 * 120.00166 * 179.97438 * 6 4 2 9 9 C 1.50702 * 109.47131 * 90.00185 * 8 6 4 10 10 H 1.07996 * 119.99825 * 0.02562 * 9 8 6 11 11 C 1.37878 * 119.99945 * 180.02562 * 9 8 6 12 12 N 1.31518 * 120.00048 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99972 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47320 * 59.99669 * 13 11 9 15 15 H 1.48500 * 109.47019 * 300.00327 * 13 11 9 16 16 H 1.48496 * 109.47456 * 180.02562 * 13 11 9 17 17 N 1.46904 * 109.46899 * 120.00785 * 2 1 3 18 18 C 1.48536 * 110.99950 * 176.82866 * 17 2 1 19 19 C 1.54933 * 103.22838 * 159.71806 * 18 17 2 20 20 H 1.09000 * 110.87903 * 81.00870 * 19 18 17 21 21 C 1.52995 * 110.72637 * 204.22813 * 19 18 17 22 22 C 1.54596 * 102.91948 * 322.58335 * 19 18 17 23 23 H 1.08996 * 110.31084 * 263.04121 * 22 19 18 24 24 C 1.53004 * 110.30865 * 140.87404 * 22 19 18 25 25 C 1.47905 * 110.99551 * 294.21926 * 17 2 1 26 26 H 1.09001 * 109.91498 * 94.80816 * 25 17 2 27 27 C 1.52995 * 109.92022 * 333.50923 * 25 17 2 28 28 H 1.08998 * 109.46731 * 291.58885 * 1 2 3 29 29 H 1.09000 * 109.46792 * 51.57809 * 1 2 3 30 30 H 1.08993 * 109.47804 * 171.58242 * 1 2 3 31 31 H 1.08993 * 109.46866 * 269.99323 * 7 6 4 32 32 H 1.08992 * 109.47427 * 29.99566 * 7 6 4 33 33 H 1.09010 * 109.46675 * 149.99818 * 7 6 4 34 34 H 1.09001 * 109.46802 * 330.00334 * 8 6 4 35 35 H 1.09007 * 109.47254 * 210.00393 * 8 6 4 36 36 H 0.96999 * 119.99877 * 0.02562 * 12 11 9 37 37 H 1.09002 * 110.65973 * 278.15007 * 18 17 2 38 38 H 1.08996 * 110.66904 * 41.28058 * 18 17 2 39 39 H 1.08997 * 109.47703 * 173.50297 * 21 19 18 40 40 H 1.09007 * 109.46451 * 293.49934 * 21 19 18 41 41 H 1.08994 * 109.47106 * 53.49387 * 21 19 18 42 42 H 1.08996 * 109.47031 * 304.28395 * 24 22 19 43 43 H 1.09001 * 109.47233 * 64.28164 * 24 22 19 44 44 H 1.09000 * 109.46902 * 184.28383 * 24 22 19 45 45 H 1.09008 * 109.46912 * 66.39334 * 27 25 17 46 46 H 1.08995 * 109.47339 * 186.39466 * 27 25 17 47 47 H 1.09004 * 109.47479 * 306.40434 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6965 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 0.8649 0.9416 -2.5889 8 6 2.1954 -0.9402 -3.6508 9 6 1.2031 -1.9975 -4.0613 10 1 0.2987 -2.1407 -3.4886 11 6 1.4499 -2.7821 -5.1679 12 7 2.5515 -2.6081 -5.8649 13 14 0.2196 -4.0923 -5.6770 14 1 -1.0883 -3.4546 -5.9738 15 1 0.0536 -5.0713 -4.5729 16 1 0.7156 -4.7929 -6.8888 17 7 2.0196 -0.6927 1.1994 18 6 3.5024 -0.7793 1.1960 19 6 3.8466 -1.0260 2.6863 20 1 3.7196 -2.0771 2.9455 21 6 5.2710 -0.5620 2.9971 22 6 2.8117 -0.1505 3.4296 23 1 3.2524 0.8090 3.7000 24 6 2.3036 -0.8736 4.6785 25 6 1.6622 0.0535 2.4253 26 1 0.7330 -0.3372 2.8402 27 6 1.5089 1.5414 2.1039 28 1 -0.3633 0.3781 0.9556 29 1 -0.3633 0.6387 -0.8051 30 1 -0.3634 -1.0165 -0.1504 31 1 -0.1831 0.6442 -2.6221 32 1 1.0288 1.6003 -1.7361 33 1 1.1229 1.4668 -3.5086 34 1 3.1557 -1.4078 -3.4335 35 1 2.3164 -0.2213 -4.4612 36 1 3.1905 -1.9280 -5.6003 37 1 3.8375 -1.6142 0.5805 38 1 3.9417 0.1561 0.8495 39 1 5.4518 -0.6370 4.0694 40 1 5.9828 -1.1920 2.4636 41 1 5.3932 0.4735 2.6796 42 1 1.9008 -1.8463 4.3965 43 1 3.1272 -1.0107 5.3793 44 1 1.5209 -0.2789 5.1495 45 1 0.6497 1.6849 1.4486 46 1 1.3581 2.0992 3.0281 47 1 2.4095 1.9003 1.6057 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419389913.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:53 Heat of formation + Delta-G solvation = -28.641636 kcal Electronic energy + Delta-G solvation = -24095.108904 eV Core-core repulsion = 20892.032794 eV Total energy + Delta-G solvation = -3203.076110 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.47229 -38.53513 -34.99414 -34.77574 -32.81331 -31.95544 -30.34490 -28.99838 -27.32916 -26.03725 -24.97959 -24.41365 -23.43721 -22.08000 -20.34493 -19.55281 -18.36199 -17.03353 -16.86730 -15.80912 -15.28946 -14.84444 -14.72740 -14.14860 -13.93156 -13.70046 -13.60787 -13.37527 -13.22964 -12.84650 -12.57250 -12.51710 -12.36904 -12.29055 -12.10231 -11.83526 -11.68896 -11.55791 -11.30793 -11.21678 -11.01351 -10.94330 -10.79683 -10.57922 -10.53481 -10.44197 -10.22806 -10.07213 -9.09317 -8.80966 -8.35646 -8.11566 -7.57851 -6.35621 -4.07012 3.37759 3.45431 3.50160 3.66600 3.72158 4.18636 4.53779 4.56738 4.59153 4.71649 5.01891 5.10914 5.18354 5.24658 5.29639 5.31339 5.34957 5.39989 5.40632 5.46353 5.53215 5.60254 5.61935 5.74445 5.78646 5.80346 5.85992 5.90677 5.92763 5.98767 6.01184 6.10241 6.14165 6.21116 6.38831 6.40680 6.50441 6.79350 7.08954 7.10812 7.21347 7.44602 8.06981 8.32118 8.46841 8.81073 9.07759 9.62424 11.01710 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024149 B = 0.004363 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.186095 B = 6416.776238 C = 6716.232917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 H 0.065 0.935 4 C 0.511 3.489 5 O -0.526 6.526 6 N -0.599 5.599 7 C 0.085 3.915 8 C 0.237 3.763 9 C -0.603 4.603 10 H 0.051 0.949 11 C 0.019 3.981 12 N -0.911 5.911 13 Si 1.071 2.929 14 H -0.288 1.288 15 H -0.287 1.287 16 H -0.282 1.282 17 N -0.488 5.488 18 C 0.040 3.960 19 C -0.094 4.094 20 H 0.083 0.917 21 C -0.141 4.141 22 C -0.095 4.095 23 H 0.073 0.927 24 C -0.140 4.140 25 C 0.065 3.935 26 H 0.086 0.914 27 C -0.184 4.184 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.032 0.968 35 H 0.020 0.980 36 H 0.267 0.733 37 H 0.109 0.891 38 H 0.033 0.967 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.068 0.932 46 H 0.059 0.941 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.482 10.372 18.371 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.058 4.058 3 H 0.083 0.917 4 C 0.296 3.704 5 O -0.402 6.402 6 N -0.332 5.332 7 C -0.059 4.059 8 C 0.118 3.882 9 C -0.642 4.642 10 H 0.069 0.931 11 C -0.185 4.185 12 N -0.547 5.547 13 Si 0.899 3.101 14 H -0.215 1.215 15 H -0.214 1.214 16 H -0.207 1.207 17 N -0.212 5.212 18 C -0.087 4.087 19 C -0.113 4.113 20 H 0.101 0.899 21 C -0.198 4.198 22 C -0.114 4.114 23 H 0.092 0.908 24 C -0.197 4.197 25 C -0.044 4.044 26 H 0.104 0.896 27 C -0.242 4.242 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.038 0.962 36 H 0.077 0.923 37 H 0.127 0.873 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.644 8.142 17.250 19.145 hybrid contribution 0.484 2.205 1.050 2.490 sum -1.160 10.347 18.299 21.054 Atomic orbital electron populations 1.22077 0.92610 1.03805 1.02336 1.21817 0.97235 0.96350 0.90397 0.91734 1.20125 0.81208 0.84994 0.84034 1.90604 1.38109 1.25674 1.85792 1.47894 1.50224 1.28090 1.06949 1.21763 0.95328 0.87516 1.01269 1.19331 0.96108 0.92077 0.80720 1.22240 1.07204 1.20179 1.14567 0.93073 1.25802 0.99571 0.99681 0.93408 1.70809 1.09500 1.33930 1.40454 0.83513 0.74565 0.75716 0.76299 1.21480 1.21381 1.20689 1.64784 1.11096 1.45605 0.99690 1.23477 0.87278 1.01845 0.96135 1.22191 0.94004 1.00103 0.95001 0.89854 1.21750 0.96025 1.01007 1.01064 1.22138 0.95248 0.98993 0.95025 0.90830 1.21809 1.00584 1.00659 0.96670 1.22583 0.98845 0.91796 0.91134 0.89570 1.22592 1.02257 0.97223 1.02124 0.91678 0.90911 0.91310 0.92778 0.92573 0.91676 0.94966 0.96219 0.92317 0.87320 0.94821 0.92727 0.92364 0.92995 0.92112 0.92830 0.92914 0.91272 0.92242 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.16 37.16 0.30 -1.80 16 2 C 0.05 0.86 1.02 -68.86 -0.07 0.79 16 3 H 0.07 0.93 5.14 -51.93 -0.27 0.66 16 4 C 0.51 10.95 6.79 -10.98 -0.07 10.87 16 5 O -0.53 -13.43 13.41 5.56 0.07 -13.36 16 6 N -0.60 -12.99 2.86 -182.95 -0.52 -13.52 16 7 C 0.09 1.38 8.83 59.85 0.53 1.91 16 8 C 0.24 6.29 4.52 -5.19 -0.02 6.26 16 9 C -0.60 -17.60 9.39 -34.44 -0.32 -17.92 16 10 H 0.05 1.51 7.81 -52.49 -0.41 1.10 16 11 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 12 N -0.91 -28.15 13.65 55.43 0.76 -27.39 16 13 Si 1.07 26.06 29.90 -169.99 -5.08 20.98 16 14 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 N -0.49 -7.61 4.92 -216.05 -1.06 -8.67 16 18 C 0.04 0.62 4.89 -1.90 -0.01 0.62 16 19 C -0.09 -1.15 3.20 -88.76 -0.28 -1.43 16 20 H 0.08 1.08 7.84 -51.93 -0.41 0.67 16 21 C -0.14 -1.45 9.16 37.16 0.34 -1.11 16 22 C -0.10 -1.00 2.81 -89.26 -0.25 -1.26 16 23 H 0.07 0.72 7.39 -51.93 -0.38 0.34 16 24 C -0.14 -1.28 8.90 37.16 0.33 -0.95 16 25 C 0.06 0.77 2.61 -66.64 -0.17 0.59 16 26 H 0.09 1.01 7.58 -51.93 -0.39 0.62 16 27 C -0.18 -1.86 7.48 37.15 0.28 -1.58 16 28 H 0.06 0.75 5.64 -51.93 -0.29 0.46 16 29 H 0.07 0.92 4.81 -51.93 -0.25 0.67 16 30 H 0.07 1.12 8.12 -51.93 -0.42 0.70 16 31 H 0.05 0.85 7.14 -51.93 -0.37 0.48 16 32 H 0.06 0.72 5.91 -51.93 -0.31 0.41 16 33 H 0.06 1.01 7.89 -51.92 -0.41 0.60 16 34 H 0.03 0.95 7.29 -51.93 -0.38 0.57 16 35 H 0.02 0.52 7.76 -51.93 -0.40 0.12 16 36 H 0.27 8.18 7.22 -40.82 -0.29 7.89 16 37 H 0.11 2.10 6.15 -51.93 -0.32 1.78 16 38 H 0.03 0.52 7.89 -51.93 -0.41 0.11 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 41 H 0.05 0.52 8.10 -51.93 -0.42 0.10 16 42 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.68 5.08 -51.92 -0.26 0.42 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.05 0.59 7.37 -51.93 -0.38 0.20 16 LS Contribution 350.22 15.07 5.28 5.28 Total: -1.00 -33.63 350.22 -8.20 -41.83 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -8.12 Total: -0.62 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 0.47 Total: -4.53 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: -0.83 Total: -49.58 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.07 Total: -13.36 kcal Atomic # 14 Polarization: 26.06 SS G_CDS: -5.08 Total: 20.98 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.63 -8.20 -41.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419389913.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.187 kcal (2) G-P(sol) polarization free energy of solvation -33.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds