Wall clock time and date at job start Tue Mar 31 2020 05:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47290 * 2 1 4 4 C 1.34774 * 119.99795 * 269.70677 * 3 2 1 5 5 O 1.21284 * 119.99970 * 185.33196 * 4 3 2 6 6 C 1.50699 * 120.00192 * 5.32144 * 4 3 2 7 7 H 1.09005 * 109.46861 * 335.44966 * 6 4 3 8 8 N 1.46893 * 109.47481 * 215.44779 * 6 4 3 9 9 C 1.53001 * 109.47083 * 95.44694 * 6 4 3 10 10 C 1.52999 * 109.47166 * 184.14962 * 9 6 4 11 11 C 1.50700 * 109.47245 * 180.02562 * 10 9 6 12 12 H 1.08001 * 119.99728 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00282 * 179.97438 * 11 10 9 14 14 N 1.31506 * 119.99843 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 119.99892 * 0.02562 * 13 11 10 16 16 H 1.48507 * 109.47099 * 89.99512 * 15 13 11 17 17 H 1.48500 * 109.47179 * 209.99660 * 15 13 11 18 18 H 1.48507 * 109.47181 * 329.99933 * 15 13 11 19 19 C 1.46500 * 120.00254 * 89.69705 * 3 2 1 20 20 C 1.52999 * 109.47441 * 240.00462 * 19 3 2 21 21 C 1.52997 * 109.47063 * 180.02562 * 20 19 3 22 22 C 1.52996 * 109.47238 * 59.99662 * 21 20 19 23 23 C 1.52999 * 109.47369 * 300.00150 * 22 21 20 24 24 C 1.52996 * 109.46865 * 120.00121 * 19 3 2 25 25 H 1.08996 * 109.47190 * 305.69182 * 1 2 3 26 26 H 1.08993 * 109.46990 * 65.69537 * 1 2 3 27 27 H 1.09000 * 109.47057 * 185.69371 * 1 2 3 28 28 H 1.08994 * 109.47387 * 239.99563 * 2 1 3 29 29 H 1.09000 * 109.46889 * 119.99524 * 2 1 3 30 30 H 1.00900 * 111.00477 * 176.04525 * 8 6 4 31 31 H 1.00897 * 111.00500 * 300.00477 * 8 6 4 32 32 H 1.09003 * 109.47238 * 304.15079 * 9 6 4 33 33 H 1.08999 * 109.47074 * 64.15041 * 9 6 4 34 34 H 1.08999 * 109.47028 * 299.99677 * 10 9 6 35 35 H 1.08992 * 109.47278 * 59.99728 * 10 9 6 36 36 H 0.97005 * 120.00060 * 180.02562 * 14 13 11 37 37 H 1.09005 * 109.46823 * 0.02562 * 19 3 2 38 38 H 1.08997 * 109.47387 * 59.99908 * 20 19 3 39 39 H 1.09002 * 109.46744 * 299.99907 * 20 19 3 40 40 H 1.09002 * 109.47080 * 299.99476 * 21 20 19 41 41 H 1.08997 * 109.47106 * 179.97438 * 21 20 19 42 42 H 1.09005 * 109.46976 * 60.00378 * 22 21 20 43 43 H 1.09007 * 109.47281 * 180.02562 * 22 21 20 44 44 H 1.09000 * 109.46783 * 180.02562 * 23 22 21 45 45 H 1.09004 * 109.46717 * 299.99515 * 23 22 21 46 46 H 1.09002 * 109.47237 * 60.00144 * 24 19 3 47 47 H 1.08998 * 109.47652 * 300.00000 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2487 2.0145 -1.1672 5 8 2.7437 3.1217 -1.1690 6 6 1.8913 1.3468 -2.4701 7 1 1.8822 0.2654 -2.3336 8 7 2.8849 1.7031 -3.4917 9 6 0.5062 1.8157 -2.9203 10 6 0.0993 1.0611 -4.1875 11 6 -1.2646 1.5233 -4.6314 12 1 -1.7886 2.2800 -4.0663 13 6 -1.8431 0.9811 -5.7594 14 7 -3.0336 1.3841 -6.1463 15 14 -0.9364 -0.3271 -6.7370 16 1 -1.2896 -1.6708 -6.2124 17 1 -1.3267 -0.2358 -8.1669 18 1 0.5278 -0.1149 -6.6089 19 6 2.2563 2.0741 1.2687 20 6 1.3713 3.3199 1.3432 21 6 1.6203 4.0438 2.6679 22 6 3.0909 4.4569 2.7548 23 6 3.9759 3.2110 2.6803 24 6 3.7269 2.4871 1.3562 25 1 -0.3633 0.5995 0.8346 26 1 -0.3633 0.4230 -0.9365 27 1 -0.3633 -1.0226 0.1020 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.7040 1.2170 -4.3571 31 1 2.9126 2.7012 -3.6366 32 1 -0.2188 1.6176 -2.1309 33 1 0.5344 2.8854 -3.1277 34 1 0.8243 1.2592 -4.9770 35 1 0.0712 -0.0086 -3.9802 36 1 -3.4407 1.0024 -6.9397 37 1 2.0165 1.4076 2.0972 38 1 0.3237 3.0257 1.2808 39 1 1.6115 3.9863 0.5147 40 1 1.3804 3.3777 3.4967 41 1 0.9902 4.9316 2.7208 42 1 3.3307 5.1231 1.9261 43 1 3.2684 4.9722 3.6989 44 1 5.0235 3.5054 2.7427 45 1 3.7360 2.5449 3.5091 46 1 3.9671 3.1534 0.5277 47 1 4.3574 1.5996 1.3032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424071679.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:40 Heat of formation + Delta-G solvation = -63.449282 kcal Electronic energy + Delta-G solvation = -23820.751900 eV Core-core repulsion = 20616.166417 eV Total energy + Delta-G solvation = -3204.585482 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.48633 -37.91714 -35.67743 -35.48576 -32.80702 -31.16139 -30.79785 -30.33391 -29.01810 -26.79384 -24.12651 -23.27883 -22.59103 -22.15605 -20.38741 -19.93505 -18.55665 -17.17991 -16.77294 -16.44125 -15.15862 -14.89446 -14.73969 -14.39479 -14.26011 -14.21636 -14.00005 -13.69932 -13.34242 -13.10872 -12.86624 -12.68472 -12.47465 -12.33017 -12.25222 -11.99034 -11.81642 -11.52145 -11.23712 -11.19079 -11.07864 -10.84693 -10.74478 -10.34216 -10.25715 -10.15983 -9.94138 -9.85529 -9.30339 -9.15208 -8.61761 -8.53317 -8.30265 -6.11236 -4.10556 2.90185 3.03783 3.24564 3.33119 3.34353 4.37768 4.49572 4.69581 4.77036 4.84270 4.92815 5.04553 5.15140 5.18797 5.21927 5.28689 5.30627 5.31380 5.45587 5.48417 5.51175 5.55332 5.65904 5.66915 5.78896 5.86963 5.92221 5.98003 6.04758 6.11834 6.16389 6.22909 6.31109 6.34227 6.38637 6.44121 6.70149 6.79395 7.13727 7.22596 7.34367 7.59029 7.67327 7.78334 8.44255 8.46311 8.93064 9.50088 11.02047 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027073 B = 0.004038 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.999269 B = 6932.824839 C = 7049.702133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 N -0.614 5.614 4 C 0.533 3.467 5 O -0.533 6.533 6 C 0.067 3.933 7 H 0.094 0.906 8 N -0.833 5.833 9 C -0.129 4.129 10 C -0.009 4.009 11 C -0.522 4.522 12 H 0.071 0.929 13 C 0.067 3.933 14 N -0.901 5.901 15 Si 0.881 3.119 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.265 1.265 19 C 0.157 3.843 20 C -0.136 4.136 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.113 4.113 24 C -0.138 4.138 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.350 0.650 31 H 0.348 0.652 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.015 0.985 35 H 0.013 0.987 36 H 0.264 0.736 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.091 0.909 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.744 -1.347 17.648 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.019 4.019 3 N -0.347 5.347 4 C 0.322 3.678 5 O -0.409 6.409 6 C -0.048 4.048 7 H 0.112 0.888 8 N -0.365 5.365 9 C -0.169 4.169 10 C -0.047 4.047 11 C -0.560 4.560 12 H 0.089 0.911 13 C -0.134 4.134 14 N -0.539 5.539 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.190 1.190 19 C 0.054 3.946 20 C -0.175 4.175 21 C -0.151 4.151 22 C -0.158 4.158 23 C -0.151 4.151 24 C -0.176 4.176 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.164 0.836 31 H 0.161 0.839 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.033 0.967 35 H 0.031 0.969 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.110 0.890 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.416 -1.109 17.997 21.892 hybrid contribution -0.707 -0.500 -1.097 1.397 sum 11.708 -1.610 16.900 20.623 Atomic orbital electron populations 1.22415 0.95444 1.02475 1.03788 1.21655 0.94945 0.82294 1.02995 1.48110 1.66740 1.14170 1.05687 1.20661 0.76430 0.85721 0.85023 1.90565 1.42869 1.20300 1.87180 1.21676 0.92774 1.00292 0.90075 0.88780 1.58824 1.50626 1.14174 1.12914 1.22240 0.93372 1.01091 1.00173 1.19561 0.97502 0.95169 0.92448 1.21062 1.00464 1.23609 1.10898 0.91100 1.25036 0.94711 0.96561 0.97105 1.69910 1.15399 1.43352 1.25278 0.86772 0.80768 0.82269 0.79411 1.20259 1.21342 1.18988 1.20980 0.95187 0.93545 0.84900 1.21953 0.99105 0.97527 0.98888 1.21463 0.96480 1.00000 0.97161 1.21550 0.94995 0.97696 1.01566 1.21462 0.99469 0.96941 0.97239 1.21995 0.95425 1.01087 0.99088 0.92476 0.90617 0.91530 0.89898 0.90733 0.83556 0.83854 0.91633 0.92025 0.96668 0.96900 0.92648 0.90288 0.92049 0.89781 0.92318 0.91904 0.91667 0.92329 0.92037 0.92434 0.89034 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 10.24 37.16 0.38 -1.70 16 2 C 0.10 1.12 5.83 -4.04 -0.02 1.10 16 3 N -0.61 -8.00 2.42 -166.11 -0.40 -8.40 16 4 C 0.53 8.57 6.20 -10.99 -0.07 8.50 16 5 O -0.53 -9.79 12.68 5.55 0.07 -9.72 16 6 C 0.07 1.09 2.75 -68.87 -0.19 0.90 16 7 H 0.09 1.42 5.63 -51.93 -0.29 1.12 16 8 N -0.83 -13.55 9.07 -5.66 -0.05 -13.60 16 9 C -0.13 -2.49 4.64 -26.73 -0.12 -2.61 16 10 C -0.01 -0.21 3.79 -27.88 -0.11 -0.32 16 11 C -0.52 -14.51 9.66 -34.44 -0.33 -14.85 16 12 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 13 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 14 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 15 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 19 C 0.16 1.84 2.55 -67.93 -0.17 1.67 16 20 C -0.14 -1.68 5.13 -26.73 -0.14 -1.82 16 21 C -0.11 -1.12 5.92 -26.73 -0.16 -1.28 16 22 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 23 C -0.11 -1.07 5.92 -26.76 -0.16 -1.23 16 24 C -0.14 -1.62 5.13 -26.76 -0.14 -1.76 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.08 1.06 5.35 -51.93 -0.28 0.79 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.89 5.87 -51.93 -0.30 0.59 16 29 H 0.07 0.63 7.93 -51.93 -0.41 0.22 16 30 H 0.35 5.55 7.52 -39.29 -0.30 5.26 16 31 H 0.35 5.82 8.56 -39.29 -0.34 5.48 16 32 H 0.07 1.25 5.59 -51.93 -0.29 0.96 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.02 0.34 5.90 -51.93 -0.31 0.03 16 35 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 37 H 0.08 0.79 7.80 -51.93 -0.40 0.38 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 1.28 6.36 -51.93 -0.33 0.95 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.09 1.35 6.00 -51.93 -0.31 1.04 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 351.45 15.07 5.30 5.30 Total: -1.00 -30.80 351.45 -8.66 -39.46 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -8.19 Total: 10.08 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -1.48 Total: -12.89 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 0.32 Total: -48.63 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.07 Total: -9.72 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.80 -8.66 -39.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424071679.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.988 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds