Wall clock time and date at job start Tue Mar 31 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47290 * 2 1 4 4 C 1.34774 * 119.99795 * 269.70677 * 3 2 1 5 5 O 1.21284 * 119.99970 * 185.33196 * 4 3 2 6 6 C 1.50699 * 120.00192 * 5.32144 * 4 3 2 7 7 H 1.09005 * 109.46861 * 335.44966 * 6 4 3 8 8 N 1.46893 * 109.47481 * 215.44779 * 6 4 3 9 9 C 1.53001 * 109.47083 * 95.44694 * 6 4 3 10 10 C 1.52999 * 109.47166 * 184.14962 * 9 6 4 11 11 C 1.50700 * 109.47245 * 180.02562 * 10 9 6 12 12 H 1.08001 * 119.99728 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00282 * 179.97438 * 11 10 9 14 14 N 1.31506 * 119.99843 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 119.99892 * 0.02562 * 13 11 10 16 16 H 1.48507 * 109.47099 * 89.99512 * 15 13 11 17 17 H 1.48500 * 109.47179 * 209.99660 * 15 13 11 18 18 H 1.48507 * 109.47181 * 329.99933 * 15 13 11 19 19 C 1.46500 * 120.00254 * 89.69705 * 3 2 1 20 20 C 1.52999 * 109.47441 * 240.00462 * 19 3 2 21 21 C 1.52997 * 109.47063 * 180.02562 * 20 19 3 22 22 C 1.52996 * 109.47238 * 59.99662 * 21 20 19 23 23 C 1.52999 * 109.47369 * 300.00150 * 22 21 20 24 24 C 1.52996 * 109.46865 * 120.00121 * 19 3 2 25 25 H 1.08996 * 109.47190 * 305.69182 * 1 2 3 26 26 H 1.08993 * 109.46990 * 65.69537 * 1 2 3 27 27 H 1.09000 * 109.47057 * 185.69371 * 1 2 3 28 28 H 1.08994 * 109.47387 * 239.99563 * 2 1 3 29 29 H 1.09000 * 109.46889 * 119.99524 * 2 1 3 30 30 H 1.00900 * 111.00477 * 176.04525 * 8 6 4 31 31 H 1.00897 * 111.00500 * 300.00477 * 8 6 4 32 32 H 1.09003 * 109.47238 * 304.15079 * 9 6 4 33 33 H 1.08999 * 109.47074 * 64.15041 * 9 6 4 34 34 H 1.08999 * 109.47028 * 299.99677 * 10 9 6 35 35 H 1.08992 * 109.47278 * 59.99728 * 10 9 6 36 36 H 0.97005 * 120.00060 * 180.02562 * 14 13 11 37 37 H 1.09005 * 109.46823 * 0.02562 * 19 3 2 38 38 H 1.08997 * 109.47387 * 59.99908 * 20 19 3 39 39 H 1.09002 * 109.46744 * 299.99907 * 20 19 3 40 40 H 1.09002 * 109.47080 * 299.99476 * 21 20 19 41 41 H 1.08997 * 109.47106 * 179.97438 * 21 20 19 42 42 H 1.09005 * 109.46976 * 60.00378 * 22 21 20 43 43 H 1.09007 * 109.47281 * 180.02562 * 22 21 20 44 44 H 1.09000 * 109.46783 * 180.02562 * 23 22 21 45 45 H 1.09004 * 109.46717 * 299.99515 * 23 22 21 46 46 H 1.09002 * 109.47237 * 60.00144 * 24 19 3 47 47 H 1.08998 * 109.47652 * 300.00000 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2487 2.0145 -1.1672 5 8 2.7437 3.1217 -1.1690 6 6 1.8913 1.3468 -2.4701 7 1 1.8822 0.2654 -2.3336 8 7 2.8849 1.7031 -3.4917 9 6 0.5062 1.8157 -2.9203 10 6 0.0993 1.0611 -4.1875 11 6 -1.2646 1.5233 -4.6314 12 1 -1.7886 2.2800 -4.0663 13 6 -1.8431 0.9811 -5.7594 14 7 -3.0336 1.3841 -6.1463 15 14 -0.9364 -0.3271 -6.7370 16 1 -1.2896 -1.6708 -6.2124 17 1 -1.3267 -0.2358 -8.1669 18 1 0.5278 -0.1149 -6.6089 19 6 2.2563 2.0741 1.2687 20 6 1.3713 3.3199 1.3432 21 6 1.6203 4.0438 2.6679 22 6 3.0909 4.4569 2.7548 23 6 3.9759 3.2110 2.6803 24 6 3.7269 2.4871 1.3562 25 1 -0.3633 0.5995 0.8346 26 1 -0.3633 0.4230 -0.9365 27 1 -0.3633 -1.0226 0.1020 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.7040 1.2170 -4.3571 31 1 2.9126 2.7012 -3.6366 32 1 -0.2188 1.6176 -2.1309 33 1 0.5344 2.8854 -3.1277 34 1 0.8243 1.2592 -4.9770 35 1 0.0712 -0.0086 -3.9802 36 1 -3.4407 1.0024 -6.9397 37 1 2.0165 1.4076 2.0972 38 1 0.3237 3.0257 1.2808 39 1 1.6115 3.9863 0.5147 40 1 1.3804 3.3777 3.4967 41 1 0.9902 4.9316 2.7208 42 1 3.3307 5.1231 1.9261 43 1 3.2684 4.9722 3.6989 44 1 5.0235 3.5054 2.7427 45 1 3.7360 2.5449 3.5091 46 1 3.9671 3.1534 0.5277 47 1 4.3574 1.5996 1.3032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424071679.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:39 Heat of formation + Delta-G solvation = -83.390919 kcal Electronic energy + Delta-G solvation = -23821.616634 eV Core-core repulsion = 20616.166417 eV Total energy + Delta-G solvation = -3205.450217 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.61463 -38.95859 -37.07183 -36.61448 -34.82110 -32.12913 -32.06953 -31.65981 -30.04003 -28.36796 -25.69480 -24.20626 -23.46593 -23.38234 -21.96528 -20.87353 -19.84952 -18.88661 -18.21813 -17.54007 -16.32456 -16.23786 -16.09283 -15.85941 -15.56165 -15.19902 -14.97661 -14.80554 -14.68776 -14.58561 -14.40919 -13.85792 -13.61371 -13.45042 -13.23578 -13.21072 -13.08773 -12.80211 -12.53191 -12.46206 -12.10671 -12.04748 -11.92259 -11.80323 -11.56009 -11.49558 -11.38638 -11.14053 -11.12630 -10.78172 -10.41524 -9.67951 -9.58604 -8.30900 -6.36772 1.36840 1.39522 1.50683 1.64159 2.00013 2.35409 3.04440 3.44292 3.72795 3.83716 3.84761 3.90645 4.01805 4.13345 4.23931 4.27235 4.29390 4.40623 4.43821 4.48263 4.59166 4.61683 4.64736 4.64945 4.74052 4.83583 4.90760 4.95387 5.01995 5.11365 5.13436 5.22512 5.24636 5.31275 5.34396 5.40262 5.43334 5.51728 5.54732 5.61012 5.81198 6.03307 6.23890 6.42292 6.48022 6.71111 7.25088 7.27977 8.86083 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027073 B = 0.004038 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.999269 B = 6932.824839 C = 7049.702133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.099 3.901 3 N -0.607 5.607 4 C 0.527 3.473 5 O -0.563 6.563 6 C 0.075 3.925 7 H 0.116 0.884 8 N -0.830 5.830 9 C -0.117 4.117 10 C -0.002 4.002 11 C -0.535 4.535 12 H 0.023 0.977 13 C 0.003 3.997 14 N -0.953 5.953 15 Si 0.954 3.046 16 H -0.262 1.262 17 H -0.288 1.288 18 H -0.239 1.239 19 C 0.154 3.846 20 C -0.134 4.134 21 C -0.109 4.109 22 C -0.120 4.120 23 C -0.108 4.108 24 C -0.133 4.133 25 H 0.058 0.942 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.353 0.647 31 H 0.344 0.656 32 H 0.062 0.938 33 H 0.035 0.965 34 H 0.024 0.976 35 H 0.030 0.970 36 H 0.266 0.734 37 H 0.111 0.889 38 H 0.053 0.947 39 H 0.045 0.955 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.041 0.959 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.055 0.945 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.665 -3.962 19.400 24.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.023 4.023 3 N -0.340 5.340 4 C 0.315 3.685 5 O -0.442 6.442 6 C -0.040 4.040 7 H 0.133 0.867 8 N -0.361 5.361 9 C -0.157 4.157 10 C -0.040 4.040 11 C -0.573 4.573 12 H 0.041 0.959 13 C -0.193 4.193 14 N -0.593 5.593 15 Si 0.777 3.223 16 H -0.187 1.187 17 H -0.215 1.215 18 H -0.162 1.162 19 C 0.051 3.949 20 C -0.173 4.173 21 C -0.147 4.147 22 C -0.158 4.158 23 C -0.146 4.146 24 C -0.172 4.172 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.128 0.872 30 H 0.168 0.832 31 H 0.157 0.843 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.128 0.872 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.073 0.927 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.346 -3.740 19.786 24.725 hybrid contribution -1.396 0.399 -1.582 2.147 sum 12.950 -3.342 18.205 22.589 Atomic orbital electron populations 1.22369 0.95939 1.03423 1.02033 1.21898 0.94424 0.81021 1.04927 1.48199 1.65447 1.15042 1.05270 1.20629 0.76606 0.85425 0.85852 1.90569 1.44396 1.21519 1.87694 1.21598 0.90548 1.01383 0.90458 0.86666 1.58845 1.50224 1.13954 1.13124 1.22045 0.95611 0.99098 0.98942 1.19462 0.94488 0.96167 0.93844 1.21401 1.02695 1.22524 1.10667 0.95907 1.26082 0.95536 0.99334 0.98388 1.70083 1.17606 1.45403 1.26210 0.85602 0.80594 0.79007 0.77117 1.18710 1.21458 1.16192 1.21178 0.95044 0.93668 0.84978 1.21894 0.98783 0.97563 0.99031 1.21453 0.96739 1.00184 0.96282 1.21548 0.94823 0.97731 1.01660 1.21449 0.99778 0.96842 0.96516 1.21914 0.95404 1.00705 0.99151 0.92313 0.93870 0.89575 0.89543 0.87215 0.83163 0.84334 0.91921 0.94656 0.95762 0.95156 0.92481 0.87159 0.92775 0.93601 0.90021 0.91995 0.94009 0.90286 0.91473 0.90121 0.92672 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.71 10.24 71.98 0.74 -2.97 16 2 C 0.10 1.83 5.83 86.38 0.50 2.34 16 3 N -0.61 -14.94 2.42 -797.84 -1.93 -16.87 16 4 C 0.53 16.86 6.20 87.66 0.54 17.41 16 5 O -0.56 -21.40 12.68 -3.04 -0.04 -21.43 16 6 C 0.07 2.39 2.75 44.17 0.12 2.51 16 7 H 0.12 3.19 5.63 -2.38 -0.01 3.18 16 8 N -0.83 -26.24 9.07 -171.81 -1.56 -27.80 16 9 C -0.12 -4.60 4.64 30.59 0.14 -4.45 16 10 C 0.00 -0.10 3.79 29.85 0.11 0.02 16 11 C -0.53 -30.60 9.66 25.60 0.25 -30.35 16 12 H 0.02 1.47 7.99 -2.91 -0.02 1.44 16 13 C 0.00 0.19 5.47 84.66 0.46 0.65 16 14 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 15 Si 0.95 42.75 27.47 68.60 1.88 44.63 16 16 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 17 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 18 H -0.24 -9.61 6.54 99.48 0.65 -8.96 16 19 C 0.15 3.32 2.55 44.99 0.11 3.43 16 20 C -0.13 -3.28 5.13 30.59 0.16 -3.12 16 21 C -0.11 -1.99 5.92 30.59 0.18 -1.81 16 22 C -0.12 -2.14 5.92 30.59 0.18 -1.96 16 23 C -0.11 -1.79 5.92 30.58 0.18 -1.61 16 24 C -0.13 -2.95 5.13 30.58 0.16 -2.80 16 25 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.04 1.18 5.35 -2.39 -0.01 1.17 16 27 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.09 1.57 5.87 -2.39 -0.01 1.55 16 29 H 0.11 1.34 7.93 -2.39 -0.02 1.32 16 30 H 0.35 10.58 7.52 -89.69 -0.67 9.90 16 31 H 0.34 11.56 8.56 -89.70 -0.77 10.79 16 32 H 0.06 2.48 5.59 -2.39 -0.01 2.46 16 33 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.02 1.04 5.90 -2.39 -0.01 1.02 16 35 H 0.03 1.25 7.57 -2.39 -0.02 1.24 16 36 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 37 H 0.11 1.74 7.80 -2.38 -0.02 1.72 16 38 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.05 1.48 6.36 -2.39 -0.02 1.46 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 44 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 46 H 0.05 1.66 6.00 -2.39 -0.01 1.64 16 47 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -70.51 351.45 1.96 -68.55 By element: Atomic # 1 Polarization: 35.59 SS G_CDS: -0.54 Total: 35.05 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: 3.84 Total: -22.72 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -3.19 Total: -104.08 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.04 Total: -21.43 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.88 Total: 44.63 kcal Total: -70.51 1.96 -68.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424071679.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.845 kcal (2) G-P(sol) polarization free energy of solvation -70.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds