Wall clock time and date at job start Tue Mar 31 2020 05:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47504 * 2 1 4 4 N 1.46497 * 109.47199 * 239.99263 * 2 1 3 5 5 C 1.34781 * 119.99716 * 85.00629 * 4 2 1 6 6 O 1.21286 * 119.99983 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00160 * 179.97438 * 5 4 2 8 8 H 1.09002 * 109.46753 * 39.99710 * 7 5 4 9 9 N 1.46898 * 109.47192 * 159.99754 * 7 5 4 10 10 C 1.52992 * 109.47482 * 279.99980 * 7 5 4 11 11 C 1.52997 * 109.47482 * 174.99860 * 10 7 5 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47432 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46890 * 120.00210 * 16 14 12 19 19 H 1.48501 * 109.47062 * 240.00257 * 16 14 12 20 20 C 1.53007 * 109.47006 * 119.99677 * 2 1 3 21 21 C 1.52998 * 109.46868 * 59.99751 * 20 2 1 22 22 C 1.53007 * 109.46868 * 180.02562 * 21 20 2 23 23 C 1.53002 * 109.46894 * 60.00365 * 22 21 20 24 24 C 1.53002 * 109.46865 * 299.99822 * 23 22 21 25 25 C 1.52997 * 109.47215 * 60.00407 * 24 23 22 26 26 H 1.09002 * 109.47039 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47240 * 300.00718 * 1 2 3 28 28 H 1.08998 * 109.46851 * 60.00187 * 1 2 3 29 29 H 0.96994 * 120.00502 * 264.99762 * 4 2 1 30 30 H 1.00899 * 111.00057 * 59.99855 * 9 7 5 31 31 H 1.00898 * 110.99947 * 183.96241 * 9 7 5 32 32 H 1.09002 * 109.47103 * 54.99613 * 10 7 5 33 33 H 1.08998 * 109.46862 * 295.00425 * 10 7 5 34 34 H 1.09002 * 109.47153 * 59.99783 * 11 10 7 35 35 H 1.09001 * 109.46832 * 299.99974 * 11 10 7 36 36 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 37 37 H 1.08993 * 109.47299 * 180.02562 * 20 2 1 38 38 H 1.08993 * 109.47495 * 300.00289 * 21 20 2 39 39 H 1.09006 * 109.47207 * 60.00737 * 21 20 2 40 40 H 1.09000 * 109.47191 * 300.00098 * 22 21 20 41 41 H 1.09001 * 109.46725 * 180.02562 * 22 21 20 42 42 H 1.08998 * 109.46860 * 179.97438 * 23 22 21 43 43 H 1.08998 * 109.46779 * 60.00243 * 23 22 21 44 44 H 1.08993 * 109.47344 * 299.99965 * 24 23 22 45 45 H 1.08998 * 109.46402 * 180.02562 * 24 23 22 46 46 H 1.08995 * 109.47396 * 179.97438 * 25 24 23 47 47 H 1.09006 * 109.47128 * 59.99396 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8584 1.1583 -2.4117 7 6 2.6501 -0.7288 -3.5874 8 1 2.2158 -1.7275 -3.6332 9 7 2.2615 0.0297 -4.7839 10 6 4.1749 -0.8381 -3.5258 11 6 4.6751 -1.6669 -4.7105 12 6 6.1771 -1.7741 -4.6501 13 1 6.7205 -1.2989 -3.8468 14 6 6.8574 -2.4797 -5.6198 15 7 6.1956 -3.0587 -6.5977 16 14 8.7191 -2.6130 -5.5445 17 1 9.2203 -1.8793 -4.3547 18 1 9.1093 -4.0424 -5.4447 19 1 9.3077 -2.0239 -6.7741 20 6 2.0400 -0.7212 1.2493 21 6 1.5299 -2.1637 1.2494 22 6 2.0394 -2.8847 2.4991 23 6 1.5288 -2.1631 3.7479 24 6 2.0389 -0.7207 3.7478 25 6 1.5294 0.0003 2.4982 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 2.2491 -1.6318 -1.1524 30 1 2.6520 0.9599 -4.7650 31 1 2.5307 -0.4587 -5.6248 32 1 4.4670 -1.3227 -2.5941 33 1 4.6126 0.1592 -3.5693 34 1 4.3829 -1.1824 -5.6421 35 1 4.2373 -2.6642 -4.6668 36 1 6.6743 -3.5548 -7.2801 37 1 3.1299 -0.7208 1.2496 38 1 0.4400 -2.1637 1.2493 39 1 1.8934 -2.6776 0.3594 40 1 3.1294 -2.8847 2.4995 41 1 1.6764 -3.9125 2.4988 42 1 1.8914 -2.6771 4.6381 43 1 0.4388 -2.1632 3.7474 44 1 3.1288 -0.7207 3.7483 45 1 1.6754 -0.2068 4.6377 46 1 1.8924 1.0281 2.4983 47 1 0.4394 0.0003 2.4977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424081883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:44 Heat of formation + Delta-G solvation = -104.664390 kcal Electronic energy + Delta-G solvation = -22885.486098 eV Core-core repulsion = 19679.113394 eV Total energy + Delta-G solvation = -3206.372704 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.25554 -39.71645 -37.15009 -36.14864 -34.83868 -32.76366 -31.69103 -31.56726 -29.55763 -28.14502 -26.04690 -24.67434 -23.59871 -22.45361 -21.57850 -21.05450 -20.07114 -18.90993 -18.11719 -17.26405 -16.58374 -16.24856 -16.14073 -15.75163 -15.61230 -15.32305 -15.04823 -14.95891 -14.81209 -14.62819 -14.00155 -13.71801 -13.46145 -13.33679 -13.16018 -13.03189 -12.93868 -12.83348 -12.66734 -12.50620 -12.19623 -11.85071 -11.81838 -11.74841 -11.67360 -11.29183 -11.27925 -11.00447 -10.85043 -10.67228 -10.57058 -10.05934 -9.63884 -8.22063 -6.32379 1.38254 1.39817 1.51633 1.64657 2.17128 2.39683 3.11624 3.64442 3.73924 3.76675 3.82634 3.87086 4.11971 4.18391 4.25455 4.28375 4.33567 4.48608 4.54166 4.62035 4.64903 4.66215 4.69307 4.78089 4.82892 4.83910 4.99796 5.05922 5.08327 5.17936 5.22027 5.31113 5.31624 5.41740 5.43274 5.46005 5.47256 5.58698 5.64839 5.65757 5.80136 6.07306 6.20845 6.47233 6.57173 6.83150 7.27582 7.36799 8.88916 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017276 B = 0.003616 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.381076 B = 7742.143312 C = 8829.732654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.146 3.854 3 H 0.063 0.937 4 N -0.715 5.715 5 C 0.527 3.473 6 O -0.573 6.573 7 C 0.080 3.920 8 H 0.108 0.892 9 N -0.830 5.830 10 C -0.120 4.120 11 C 0.030 3.970 12 C -0.544 4.544 13 H 0.054 0.946 14 C 0.005 3.995 15 N -0.926 5.926 16 Si 0.959 3.041 17 H -0.266 1.266 18 H -0.276 1.276 19 H -0.280 1.280 20 C -0.086 4.086 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.118 4.118 25 C -0.111 4.111 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.034 0.966 29 H 0.409 0.591 30 H 0.343 0.657 31 H 0.352 0.648 32 H 0.065 0.935 33 H 0.043 0.957 34 H 0.002 0.998 35 H 0.002 0.998 36 H 0.264 0.736 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.056 0.944 45 H 0.071 0.929 46 H 0.060 0.940 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.095 1.076 20.681 23.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.042 3.958 3 H 0.081 0.919 4 N -0.368 5.368 5 C 0.313 3.687 6 O -0.451 6.451 7 C -0.036 4.036 8 H 0.126 0.874 9 N -0.361 5.361 10 C -0.160 4.160 11 C -0.007 4.007 12 C -0.582 4.582 13 H 0.072 0.928 14 C -0.193 4.193 15 N -0.566 5.566 16 Si 0.784 3.216 17 H -0.190 1.190 18 H -0.202 1.202 19 H -0.205 1.205 20 C -0.105 4.105 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.155 4.155 24 C -0.155 4.155 25 C -0.149 4.149 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.053 0.947 29 H 0.246 0.754 30 H 0.156 0.844 31 H 0.167 0.833 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.020 0.980 35 H 0.021 0.979 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.043 1.718 20.760 24.061 hybrid contribution 2.245 -0.478 -0.764 2.419 sum -9.798 1.240 19.995 22.301 Atomic orbital electron populations 1.22216 0.94579 1.02858 1.02010 1.21004 0.94749 0.96272 0.83816 0.91865 1.46087 1.66986 1.14611 1.09123 1.20697 0.76091 0.86802 0.85085 1.90611 1.51435 1.17579 1.85509 1.21421 0.94525 0.98095 0.89521 0.87446 1.58756 1.66882 1.06788 1.03694 1.22118 0.93345 0.99946 1.00552 1.18971 0.94774 0.94145 0.92829 1.21643 0.93733 1.32762 1.10080 0.92776 1.25865 1.03335 0.95106 0.95017 1.70067 1.37398 1.35189 1.13981 0.85486 0.79864 0.78038 0.78186 1.19022 1.20202 1.20548 1.21353 1.00284 0.95752 0.93088 1.21668 1.01585 0.94033 0.98206 1.21531 1.00564 0.99179 0.94456 1.21532 1.00997 0.95371 0.97619 1.21517 1.00557 0.95924 0.97523 1.21595 1.01581 0.98664 0.93087 0.90954 0.89764 0.94721 0.75361 0.84382 0.83307 0.91656 0.93861 0.97961 0.97918 0.92721 0.91477 0.90594 0.92201 0.92582 0.91404 0.91655 0.91507 0.92565 0.91074 0.92079 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 8.78 71.98 0.63 -2.48 16 2 C 0.15 3.19 2.40 45.00 0.11 3.29 16 3 H 0.06 1.69 7.58 -2.39 -0.02 1.67 16 4 N -0.72 -18.00 5.00 -442.51 -2.21 -20.21 16 5 C 0.53 17.43 7.04 87.66 0.62 18.04 16 6 O -0.57 -22.67 15.91 -3.05 -0.05 -22.72 16 7 C 0.08 2.72 3.21 44.17 0.14 2.87 16 8 H 0.11 3.40 8.14 -2.39 -0.02 3.39 16 9 N -0.83 -29.34 8.94 -171.81 -1.54 -30.87 16 10 C -0.12 -4.73 4.78 30.59 0.15 -4.58 16 11 C 0.03 1.48 4.74 29.85 0.14 1.62 16 12 C -0.54 -30.01 9.11 25.60 0.23 -29.78 16 13 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 14 C 0.01 0.29 5.46 84.66 0.46 0.75 16 15 N -0.93 -54.37 13.29 21.45 0.28 -54.09 16 16 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 C -0.09 -1.43 2.18 -10.79 -0.02 -1.46 16 21 C -0.12 -1.70 4.68 30.60 0.14 -1.56 16 22 C -0.12 -1.59 5.92 30.60 0.18 -1.41 16 23 C -0.12 -1.36 5.92 30.60 0.18 -1.18 16 24 C -0.12 -1.45 5.92 30.59 0.18 -1.27 16 25 C -0.11 -1.54 4.85 30.59 0.15 -1.39 16 26 H 0.07 1.23 6.43 -2.39 -0.02 1.21 16 27 H 0.08 1.31 6.43 -2.39 -0.02 1.29 16 28 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.41 8.72 6.87 -92.71 -0.64 8.09 16 30 H 0.34 12.41 8.58 -89.69 -0.77 11.64 16 31 H 0.35 12.55 7.55 -89.70 -0.68 11.87 16 32 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.00 0.11 6.87 -2.39 -0.02 0.09 16 35 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 36 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 38 H 0.08 1.01 6.43 -2.39 -0.02 0.99 16 39 H 0.06 0.90 6.51 -2.38 -0.02 0.89 16 40 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 41 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.08 0.94 6.43 -2.38 -0.02 0.93 16 Total: -1.00 -65.23 360.55 0.69 -64.54 By element: Atomic # 1 Polarization: 37.52 SS G_CDS: -1.12 Total: 36.40 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 3.29 Total: -18.52 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -3.46 Total: -105.17 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.05 Total: -22.72 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -65.23 0.69 -64.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424081883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.125 kcal (2) G-P(sol) polarization free energy of solvation -65.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds