Wall clock time and date at job start Tue Mar 31 2020 05:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 5 5 C 1.34784 * 119.99635 * 274.99773 * 4 2 1 6 6 O 1.21279 * 119.99925 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99961 * 180.02562 * 5 4 2 8 8 H 1.09006 * 109.47033 * 320.00067 * 7 5 4 9 9 N 1.46896 * 109.47339 * 200.00128 * 7 5 4 10 10 C 1.52997 * 109.47164 * 79.99626 * 7 5 4 11 11 C 1.53007 * 109.47216 * 185.00058 * 10 7 5 12 12 C 1.50692 * 109.47118 * 180.02562 * 11 10 7 13 13 H 1.08000 * 120.00401 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00052 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99816 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00063 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46764 * 60.00251 * 16 14 12 18 18 H 1.48498 * 109.46828 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47396 * 300.00014 * 16 14 12 20 20 C 1.53004 * 109.46705 * 240.00068 * 2 1 3 21 21 C 1.53005 * 109.46705 * 179.97438 * 20 2 1 22 22 C 1.53004 * 109.46705 * 180.02562 * 21 20 2 23 23 C 1.53000 * 109.47072 * 60.00497 * 22 21 20 24 24 C 1.53005 * 109.46950 * 299.99353 * 23 22 21 25 25 C 1.53000 * 109.47072 * 60.00497 * 20 2 1 26 26 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 28 28 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 29 29 H 0.96995 * 120.00292 * 95.27206 * 4 2 1 30 30 H 1.00903 * 110.99667 * 300.00295 * 9 7 5 31 31 H 1.00904 * 110.99976 * 63.94778 * 9 7 5 32 32 H 1.08996 * 109.47223 * 304.99904 * 10 7 5 33 33 H 1.08998 * 109.47055 * 65.00264 * 10 7 5 34 34 H 1.09000 * 109.46845 * 300.00564 * 11 10 7 35 35 H 1.08998 * 109.46940 * 60.00136 * 11 10 7 36 36 H 0.96999 * 120.00098 * 180.02562 * 15 14 12 37 37 H 1.08996 * 109.47170 * 300.00241 * 20 2 1 38 38 H 1.08997 * 109.46769 * 299.99932 * 21 20 2 39 39 H 1.08996 * 109.46826 * 59.99994 * 21 20 2 40 40 H 1.08996 * 109.47170 * 300.00241 * 22 21 20 41 41 H 1.09002 * 109.46770 * 179.97438 * 22 21 20 42 42 H 1.08997 * 109.46752 * 179.97438 * 23 22 21 43 43 H 1.08990 * 109.47431 * 59.99389 * 23 22 21 44 44 H 1.09003 * 109.47189 * 300.00626 * 24 23 22 45 45 H 1.08996 * 109.46826 * 180.02562 * 24 23 22 46 46 H 1.09002 * 109.46694 * 299.99276 * 25 20 2 47 47 H 1.08990 * 109.47431 * 59.99389 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8591 1.1585 2.4114 7 6 2.6500 -0.7286 3.5874 8 1 2.2157 -1.7274 3.6333 9 7 2.2614 0.0298 4.7839 10 6 4.1748 -0.8379 3.5257 11 6 4.6751 -1.6668 4.7106 12 6 6.1769 -1.7739 4.6502 13 1 6.7204 -1.2988 3.8469 14 6 6.8574 -2.4786 5.6205 15 7 6.1957 -3.0576 6.5984 16 14 8.7191 -2.6120 5.5452 17 1 9.3155 -1.2532 5.6039 18 1 9.2047 -3.4153 6.6959 19 1 9.1172 -3.2729 4.2764 20 6 2.0400 -0.7213 -1.2493 21 6 3.5700 -0.7207 -1.2496 22 6 4.0799 -1.4414 -2.4993 23 6 3.5694 -0.7199 -3.7481 24 6 2.0394 -0.7204 -3.7478 25 6 1.5300 0.0001 -2.4985 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 2.2528 -1.6308 1.1515 30 1 2.6518 0.9600 4.7650 31 1 1.2576 0.0610 4.8821 32 1 4.4669 -1.3226 2.5942 33 1 4.6126 0.1593 3.5694 34 1 4.3828 -1.1822 5.6421 35 1 4.2373 -2.6640 4.6669 36 1 6.6744 -3.5530 7.2812 37 1 1.6766 -1.7489 -1.2493 38 1 3.9329 0.3071 -1.2499 39 1 3.9337 -1.2343 -0.3597 40 1 3.7169 -2.4692 -2.4995 41 1 5.1699 -1.4406 -2.4997 42 1 3.9331 -1.2331 -4.6383 43 1 3.9324 0.3078 -3.7479 44 1 1.6764 -1.7482 -3.7480 45 1 1.6757 -0.2068 -4.6377 46 1 0.4400 0.0001 -2.4985 47 1 1.8933 1.0277 -2.4985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424081884.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:47 Heat of formation + Delta-G solvation = -86.712135 kcal Electronic energy + Delta-G solvation = -22954.228500 eV Core-core repulsion = 19748.634264 eV Total energy + Delta-G solvation = -3205.594235 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.16053 -38.76438 -35.61922 -34.95147 -32.78181 -31.88521 -30.89825 -30.06784 -28.98138 -26.40592 -24.41050 -23.15986 -22.61939 -20.93280 -20.51596 -20.12847 -19.54094 -17.17500 -16.38586 -16.12779 -15.61596 -15.40117 -14.68332 -14.51078 -14.36184 -14.23232 -14.13644 -13.70036 -13.47873 -13.30659 -12.84346 -12.47708 -12.33076 -12.20375 -11.98701 -11.72923 -11.62892 -11.51154 -11.32121 -11.07791 -10.87003 -10.65798 -10.62939 -10.55579 -10.32327 -10.23361 -10.04369 -9.77384 -9.35040 -9.01619 -8.96427 -8.32394 -8.17256 -5.92657 -3.94823 2.84241 3.31839 3.36610 3.41217 3.43661 4.32558 4.49636 4.50761 4.52838 4.84066 4.92185 4.99601 5.01383 5.14919 5.19324 5.22718 5.31214 5.32268 5.41389 5.42794 5.43228 5.55477 5.57073 5.66201 5.78691 5.82982 5.86932 5.92687 5.93435 5.96548 6.01238 6.14034 6.17469 6.28363 6.45286 6.58728 6.68324 7.10842 7.42296 7.66851 7.77254 7.82806 7.97734 8.14653 8.39423 8.49795 9.13078 9.68187 11.18245 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016120 B = 0.003924 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.544566 B = 7133.992858 C = 8574.917948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.084 0.916 4 N -0.725 5.725 5 C 0.484 3.516 6 O -0.555 6.555 7 C 0.077 3.923 8 H 0.096 0.904 9 N -0.807 5.807 10 C -0.094 4.094 11 C 0.032 3.968 12 C -0.523 4.523 13 H 0.051 0.949 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.889 3.111 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.092 4.092 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.113 4.113 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.401 0.599 30 H 0.347 0.653 31 H 0.333 0.667 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.035 0.965 35 H 0.012 0.988 36 H 0.260 0.740 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.248 3.354 -19.699 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.102 0.898 4 N -0.377 5.377 5 C 0.270 3.730 6 O -0.433 6.433 7 C -0.038 4.038 8 H 0.114 0.886 9 N -0.335 5.335 10 C -0.132 4.132 11 C -0.006 4.006 12 C -0.561 4.561 13 H 0.069 0.931 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.204 1.204 20 C -0.111 4.111 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.151 4.151 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.235 0.765 30 H 0.161 0.839 31 H 0.145 0.855 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.028 3.540 -19.056 22.300 hybrid contribution 0.664 0.063 -0.757 1.009 sum -10.364 3.603 -19.813 22.649 Atomic orbital electron populations 1.22217 0.95658 1.01955 1.02292 1.20947 0.93670 0.97527 0.84014 0.89804 1.46239 1.67478 1.14280 1.09672 1.22703 0.76217 0.87989 0.86084 1.90633 1.50925 1.16368 1.85410 1.21833 0.99843 0.97419 0.84744 0.88577 1.59004 1.15233 1.22241 1.37018 1.21639 0.88388 1.01514 1.01697 1.19008 0.94731 0.94102 0.92718 1.21244 0.92538 1.32581 1.09742 0.93065 1.24987 0.98055 0.95742 0.95507 1.69963 1.35375 1.34631 1.13243 0.86718 0.86173 0.78057 0.77374 1.20324 1.21331 1.20377 1.21438 0.96142 0.99893 0.93673 1.21590 0.94333 1.01258 0.98186 1.21530 1.00456 0.99321 0.94389 1.21552 0.95597 1.00809 0.97871 1.21511 0.95821 1.00689 0.97516 1.21589 1.00430 0.99471 0.93591 0.92574 0.92294 0.91655 0.76458 0.83877 0.85538 0.92899 0.92927 0.94704 0.96922 0.93051 0.90711 0.91922 0.91286 0.91997 0.91879 0.92265 0.92081 0.92029 0.92135 0.91537 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.13 37.16 0.34 -1.28 16 2 C 0.14 1.56 2.16 -67.93 -0.15 1.42 16 3 H 0.08 1.10 7.58 -51.93 -0.39 0.71 16 4 N -0.72 -8.89 4.39 -53.80 -0.24 -9.12 16 5 C 0.48 7.56 7.03 -10.98 -0.08 7.48 16 6 O -0.56 -10.21 15.91 5.56 0.09 -10.12 16 7 C 0.08 1.30 3.15 -68.87 -0.22 1.08 16 8 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 9 N -0.81 -13.79 8.44 -5.66 -0.05 -13.84 16 10 C -0.09 -1.90 4.78 -26.73 -0.13 -2.02 16 11 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 12 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 13 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 16 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 C -0.09 -0.81 1.83 -90.61 -0.17 -0.98 16 21 C -0.12 -1.14 5.05 -26.73 -0.13 -1.28 16 22 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 23 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 24 C -0.12 -0.84 5.92 -26.75 -0.16 -1.00 16 25 C -0.11 -0.87 4.85 -26.76 -0.13 -1.00 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 29 H 0.40 4.29 8.38 -40.82 -0.34 3.94 16 30 H 0.35 6.04 8.58 -39.29 -0.34 5.71 16 31 H 0.33 4.96 9.06 -39.29 -0.36 4.60 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 35 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.76 7.44 -51.93 -0.39 0.37 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.47 6.43 -51.93 -0.33 0.13 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -31.69 367.88 -9.38 -41.08 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -8.77 Total: 8.67 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -1.68 Total: -12.72 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.45 Total: -49.22 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.69 -9.38 -41.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424081884.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.634 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds