Wall clock time and date at job start Tue Mar 31 2020 05:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 5 5 C 1.34781 * 119.99874 * 85.00543 * 4 2 1 6 6 O 1.21278 * 120.00033 * 359.97438 * 5 4 2 7 7 C 1.50703 * 120.00101 * 179.97438 * 5 4 2 8 8 H 1.08997 * 109.46902 * 320.00088 * 7 5 4 9 9 N 1.46896 * 109.47041 * 199.99841 * 7 5 4 10 10 C 1.53006 * 109.46994 * 79.99671 * 7 5 4 11 11 C 1.52998 * 109.46963 * 185.00052 * 10 7 5 12 12 C 1.50695 * 109.47226 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00037 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00328 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99771 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00211 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47325 * 59.99960 * 16 14 12 18 18 H 1.48496 * 109.46974 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46713 * 300.00013 * 16 14 12 20 20 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 21 21 C 1.52996 * 109.46972 * 59.99538 * 20 2 1 22 22 C 1.53002 * 109.46969 * 180.02562 * 21 20 2 23 23 C 1.53002 * 109.47454 * 59.99949 * 22 21 20 24 24 C 1.52996 * 109.46891 * 300.00332 * 23 22 21 25 25 C 1.53002 * 109.47346 * 59.99997 * 24 23 22 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 28 28 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 29 29 H 0.97002 * 120.00410 * 264.99761 * 4 2 1 30 30 H 1.00903 * 110.99882 * 176.04421 * 9 7 5 31 31 H 1.00900 * 111.00091 * 299.99234 * 9 7 5 32 32 H 1.08994 * 109.46916 * 305.00128 * 10 7 5 33 33 H 1.09003 * 109.46759 * 65.00028 * 10 7 5 34 34 H 1.09006 * 109.47395 * 300.00209 * 11 10 7 35 35 H 1.09000 * 109.47260 * 59.99874 * 11 10 7 36 36 H 0.97002 * 119.99785 * 179.97438 * 15 14 12 37 37 H 1.08996 * 109.47407 * 180.02562 * 20 2 1 38 38 H 1.09004 * 109.47298 * 300.00176 * 21 20 2 39 39 H 1.09004 * 109.47552 * 60.00305 * 21 20 2 40 40 H 1.09004 * 109.46930 * 300.00004 * 22 21 20 41 41 H 1.09002 * 109.47067 * 180.02562 * 22 21 20 42 42 H 1.08992 * 109.47056 * 179.97438 * 23 22 21 43 43 H 1.09004 * 109.47006 * 60.00102 * 23 22 21 44 44 H 1.08996 * 109.47261 * 299.99425 * 24 23 22 45 45 H 1.09004 * 109.47368 * 179.97438 * 24 23 22 46 46 H 1.09002 * 109.47075 * 180.02562 * 25 24 23 47 47 H 1.08996 * 109.47407 * 59.99517 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0183 -2.3572 6 8 1.8583 1.1583 -2.4117 7 6 2.6499 -0.7286 -3.5875 8 1 3.4562 -1.4079 -3.3108 9 7 3.1509 0.2589 -4.5526 10 6 1.5065 -1.5250 -4.2196 11 6 2.0443 -2.3442 -5.3946 12 6 0.9184 -3.1291 -6.0169 13 1 -0.0809 -3.0511 -5.6148 14 6 1.1638 -3.9459 -7.1002 15 7 2.3806 -4.0405 -7.5902 16 14 -0.2321 -4.9183 -7.8720 17 1 -1.2778 -3.9826 -8.3578 18 1 0.2900 -5.7134 -9.0123 19 1 -0.8178 -5.8324 -6.8587 20 6 2.0400 -0.7213 1.2492 21 6 1.5300 -2.1637 1.2492 22 6 2.0395 -2.8848 2.4988 23 6 1.5291 -2.1634 3.7478 24 6 2.0391 -0.7210 3.7477 25 6 1.5295 0.0002 2.4982 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 2.2490 -1.6319 -1.1526 30 1 3.5527 -0.1952 -5.3591 31 1 2.4215 0.9007 -4.8251 32 1 1.0763 -2.1957 -3.4759 33 1 0.7392 -0.8381 -4.5766 34 1 2.4747 -1.6735 -6.1384 35 1 2.8117 -3.0311 -5.0377 36 1 2.5533 -4.6154 -8.3521 37 1 3.1300 -0.7209 1.2495 38 1 0.4399 -2.1637 1.2492 39 1 1.8932 -2.6777 0.3592 40 1 3.1295 -2.8849 2.4991 41 1 1.6764 -3.9126 2.4985 42 1 1.8917 -2.6774 4.6379 43 1 0.4390 -2.1634 3.7474 44 1 3.1291 -0.7210 3.7481 45 1 1.6752 -0.2068 4.6373 46 1 1.8933 1.0277 2.4980 47 1 0.4396 0.0002 2.4978 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424081885.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:49 Heat of formation + Delta-G solvation = -84.887726 kcal Electronic energy + Delta-G solvation = -22887.210411 eV Core-core repulsion = 19681.695288 eV Total energy + Delta-G solvation = -3205.515123 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.14047 -38.75694 -35.70001 -34.99921 -32.84312 -31.80066 -30.93779 -29.86687 -28.73498 -26.54700 -24.56065 -23.51031 -22.89252 -21.10629 -20.53177 -19.69166 -19.32524 -17.36999 -16.23201 -16.17424 -15.43824 -15.01481 -14.74912 -14.47487 -14.41758 -14.35434 -14.24813 -14.00578 -13.20638 -13.11232 -12.68069 -12.57227 -12.51322 -12.34845 -12.11192 -12.02097 -11.69302 -11.43132 -11.17473 -11.06917 -11.02335 -10.90016 -10.70257 -10.62488 -10.34077 -10.17717 -9.97552 -9.86763 -9.27809 -9.17211 -8.89955 -8.43569 -8.15611 -6.08306 -4.11484 3.00735 3.28386 3.33073 3.33403 3.36066 4.38902 4.39589 4.44230 4.49363 4.86238 4.94886 4.98946 5.12509 5.20506 5.22908 5.24681 5.26288 5.27890 5.33271 5.40908 5.44919 5.58381 5.61344 5.71641 5.79514 5.80263 5.86036 5.89387 5.91854 5.97243 6.03059 6.11192 6.16765 6.30489 6.35911 6.53797 6.68094 6.88856 7.47109 7.52873 7.62753 7.77800 7.88765 7.93413 8.31599 8.55100 8.94326 9.53314 11.02572 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019560 B = 0.003451 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.161995 B = 8110.625163 C = 8917.674169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.148 3.852 3 H 0.085 0.915 4 N -0.730 5.730 5 C 0.526 3.474 6 O -0.540 6.540 7 C 0.074 3.926 8 H 0.095 0.905 9 N -0.831 5.831 10 C -0.136 4.136 11 C 0.025 3.975 12 C -0.525 4.525 13 H 0.054 0.946 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.093 4.093 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.114 4.114 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.399 0.601 30 H 0.353 0.647 31 H 0.345 0.655 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.262 0.738 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.362 4.379 21.674 22.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 H 0.103 0.897 4 N -0.384 5.384 5 C 0.313 3.687 6 O -0.416 6.416 7 C -0.042 4.042 8 H 0.113 0.887 9 N -0.363 5.363 10 C -0.176 4.176 11 C -0.012 4.012 12 C -0.563 4.563 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.112 4.112 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.156 4.156 25 C -0.151 4.151 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.234 0.766 30 H 0.169 0.831 31 H 0.158 0.842 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.046 5.387 22.060 22.708 hybrid contribution -1.354 -1.565 -1.151 2.368 sum -1.308 3.822 20.909 21.296 Atomic orbital electron populations 1.22283 0.95623 1.02298 1.02281 1.20872 0.94052 0.97107 0.83673 0.89739 1.46152 1.68507 1.14134 1.09590 1.20872 0.76435 0.87052 0.84362 1.90620 1.49778 1.16206 1.84985 1.21480 0.98420 0.93231 0.91025 0.88736 1.58745 1.38282 1.19912 1.19324 1.22366 0.96445 0.98686 1.00112 1.19095 0.96535 0.94239 0.91377 1.21149 0.94971 1.25955 1.14199 0.92787 1.25012 0.95597 0.96826 0.96858 1.69942 1.19655 1.38951 1.24673 0.86644 0.82371 0.80090 0.78835 1.20219 1.21211 1.20218 1.21419 1.00729 0.95241 0.93809 1.21677 1.01402 0.94769 0.97865 1.21529 1.00789 0.98894 0.94485 1.21538 1.00765 0.95665 0.97762 1.21523 1.00778 0.95698 0.97605 1.21603 1.01208 0.98851 0.93483 0.92123 0.91772 0.92161 0.76557 0.83140 0.84178 0.92603 0.92749 0.96418 0.96364 0.92824 0.90626 0.91204 0.91831 0.92018 0.91961 0.92285 0.92046 0.92046 0.92106 0.91809 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 8.78 37.16 0.33 -1.53 16 2 C 0.15 1.68 2.40 -67.93 -0.16 1.52 16 3 H 0.08 1.11 7.58 -51.93 -0.39 0.72 16 4 N -0.73 -9.51 5.00 -53.80 -0.27 -9.78 16 5 C 0.53 8.80 7.04 -10.98 -0.08 8.72 16 6 O -0.54 -10.65 15.91 5.56 0.09 -10.56 16 7 C 0.07 1.27 3.21 -68.86 -0.22 1.05 16 8 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 9 N -0.83 -14.63 8.94 -5.65 -0.05 -14.68 16 10 C -0.14 -2.70 4.78 -26.73 -0.13 -2.82 16 11 C 0.02 0.60 4.74 -27.89 -0.13 0.47 16 12 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 13 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 16 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 20 C -0.09 -0.82 2.18 -90.62 -0.20 -1.02 16 21 C -0.12 -1.00 4.68 -26.73 -0.13 -1.13 16 22 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 23 C -0.12 -0.83 5.92 -26.73 -0.16 -0.98 16 24 C -0.12 -0.82 5.92 -26.73 -0.16 -0.97 16 25 C -0.11 -0.87 4.85 -26.73 -0.13 -1.00 16 26 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 27 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.40 4.54 6.87 -40.82 -0.28 4.26 16 30 H 0.35 6.22 7.55 -39.29 -0.30 5.92 16 31 H 0.35 6.17 8.58 -39.29 -0.34 5.83 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.60 6.43 -51.93 -0.33 0.27 16 39 H 0.06 0.55 6.51 -51.93 -0.34 0.21 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.52 6.43 -51.93 -0.33 0.19 16 LS Contribution 360.55 15.07 5.43 5.43 Total: -1.00 -30.71 360.55 -9.19 -39.91 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -8.37 Total: 10.70 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -1.73 Total: -11.95 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.42 Total: -49.81 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.71 -9.19 -39.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424081885.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.983 kcal (2) G-P(sol) polarization free energy of solvation -30.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds