Wall clock time and date at job start Tue Mar 31 2020 05:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 5 5 C 1.34781 * 119.99874 * 85.00543 * 4 2 1 6 6 O 1.21278 * 120.00033 * 359.97438 * 5 4 2 7 7 C 1.50703 * 120.00101 * 179.97438 * 5 4 2 8 8 H 1.08997 * 109.46902 * 320.00088 * 7 5 4 9 9 N 1.46896 * 109.47041 * 199.99841 * 7 5 4 10 10 C 1.53006 * 109.46994 * 79.99671 * 7 5 4 11 11 C 1.52998 * 109.46963 * 185.00052 * 10 7 5 12 12 C 1.50695 * 109.47226 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00037 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00328 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99771 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00211 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47325 * 59.99960 * 16 14 12 18 18 H 1.48496 * 109.46974 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46713 * 300.00013 * 16 14 12 20 20 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 21 21 C 1.52996 * 109.46972 * 59.99538 * 20 2 1 22 22 C 1.53002 * 109.46969 * 180.02562 * 21 20 2 23 23 C 1.53002 * 109.47454 * 59.99949 * 22 21 20 24 24 C 1.52996 * 109.46891 * 300.00332 * 23 22 21 25 25 C 1.53002 * 109.47346 * 59.99997 * 24 23 22 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 28 28 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 29 29 H 0.97002 * 120.00410 * 264.99761 * 4 2 1 30 30 H 1.00903 * 110.99882 * 176.04421 * 9 7 5 31 31 H 1.00900 * 111.00091 * 299.99234 * 9 7 5 32 32 H 1.08994 * 109.46916 * 305.00128 * 10 7 5 33 33 H 1.09003 * 109.46759 * 65.00028 * 10 7 5 34 34 H 1.09006 * 109.47395 * 300.00209 * 11 10 7 35 35 H 1.09000 * 109.47260 * 59.99874 * 11 10 7 36 36 H 0.97002 * 119.99785 * 179.97438 * 15 14 12 37 37 H 1.08996 * 109.47407 * 180.02562 * 20 2 1 38 38 H 1.09004 * 109.47298 * 300.00176 * 21 20 2 39 39 H 1.09004 * 109.47552 * 60.00305 * 21 20 2 40 40 H 1.09004 * 109.46930 * 300.00004 * 22 21 20 41 41 H 1.09002 * 109.47067 * 180.02562 * 22 21 20 42 42 H 1.08992 * 109.47056 * 179.97438 * 23 22 21 43 43 H 1.09004 * 109.47006 * 60.00102 * 23 22 21 44 44 H 1.08996 * 109.47261 * 299.99425 * 24 23 22 45 45 H 1.09004 * 109.47368 * 179.97438 * 24 23 22 46 46 H 1.09002 * 109.47075 * 180.02562 * 25 24 23 47 47 H 1.08996 * 109.47407 * 59.99517 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0183 -2.3572 6 8 1.8583 1.1583 -2.4117 7 6 2.6499 -0.7286 -3.5875 8 1 3.4562 -1.4079 -3.3108 9 7 3.1509 0.2589 -4.5526 10 6 1.5065 -1.5250 -4.2196 11 6 2.0443 -2.3442 -5.3946 12 6 0.9184 -3.1291 -6.0169 13 1 -0.0809 -3.0511 -5.6148 14 6 1.1638 -3.9459 -7.1002 15 7 2.3806 -4.0405 -7.5902 16 14 -0.2321 -4.9183 -7.8720 17 1 -1.2778 -3.9826 -8.3578 18 1 0.2900 -5.7134 -9.0123 19 1 -0.8178 -5.8324 -6.8587 20 6 2.0400 -0.7213 1.2492 21 6 1.5300 -2.1637 1.2492 22 6 2.0395 -2.8848 2.4988 23 6 1.5291 -2.1634 3.7478 24 6 2.0391 -0.7210 3.7477 25 6 1.5295 0.0002 2.4982 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 2.2490 -1.6319 -1.1526 30 1 3.5527 -0.1952 -5.3591 31 1 2.4215 0.9007 -4.8251 32 1 1.0763 -2.1957 -3.4759 33 1 0.7392 -0.8381 -4.5766 34 1 2.4747 -1.6735 -6.1384 35 1 2.8117 -3.0311 -5.0377 36 1 2.5533 -4.6154 -8.3521 37 1 3.1300 -0.7209 1.2495 38 1 0.4399 -2.1637 1.2492 39 1 1.8932 -2.6777 0.3592 40 1 3.1295 -2.8849 2.4991 41 1 1.6764 -3.9126 2.4985 42 1 1.8917 -2.6774 4.6379 43 1 0.4390 -2.1634 3.7474 44 1 3.1291 -0.7210 3.7481 45 1 1.6752 -0.2068 4.6373 46 1 1.8933 1.0277 2.4980 47 1 0.4396 0.0002 2.4978 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424081885.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:49 Heat of formation + Delta-G solvation = -104.555637 kcal Electronic energy + Delta-G solvation = -22888.063275 eV Core-core repulsion = 19681.695288 eV Total energy + Delta-G solvation = -3206.367988 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.25666 -39.71466 -37.14588 -36.15018 -34.83626 -32.76312 -31.68965 -31.56390 -29.55775 -28.16803 -26.02319 -24.67366 -23.59610 -22.45535 -21.59626 -21.03388 -20.06740 -18.90705 -18.11676 -17.23634 -16.60955 -16.26903 -16.08783 -15.83210 -15.61185 -15.27715 -15.04917 -14.98557 -14.72049 -14.60275 -14.12490 -13.67952 -13.43335 -13.35550 -13.15984 -13.00741 -12.92939 -12.84042 -12.66554 -12.54024 -12.19391 -11.84879 -11.80704 -11.75557 -11.66110 -11.32251 -11.27481 -11.00248 -10.84714 -10.67597 -10.55901 -10.05060 -9.64483 -8.21620 -6.32220 1.39697 1.41295 1.49326 1.64681 2.17134 2.39945 3.11890 3.64658 3.74149 3.76917 3.82514 3.87226 4.11868 4.18809 4.24990 4.28501 4.33911 4.48873 4.53506 4.62020 4.65206 4.66046 4.69625 4.77443 4.82676 4.83825 4.99023 5.05832 5.08452 5.18074 5.22439 5.31389 5.31918 5.41522 5.43350 5.45819 5.47411 5.58708 5.64993 5.65990 5.80194 6.07280 6.20953 6.47087 6.57204 6.83053 7.27617 7.36885 8.88976 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019560 B = 0.003451 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.161995 B = 8110.625163 C = 8917.674169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.067 0.933 4 N -0.715 5.715 5 C 0.527 3.473 6 O -0.572 6.572 7 C 0.079 3.921 8 H 0.107 0.893 9 N -0.830 5.830 10 C -0.119 4.119 11 C 0.031 3.969 12 C -0.547 4.547 13 H 0.055 0.945 14 C 0.006 3.994 15 N -0.927 5.927 16 Si 0.959 3.041 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.267 1.267 20 C -0.083 4.083 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.116 4.116 25 C -0.112 4.112 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.031 0.969 29 H 0.409 0.591 30 H 0.352 0.648 31 H 0.343 0.657 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.002 0.998 35 H 0.002 0.998 36 H 0.264 0.736 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.166 3.625 23.251 23.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.085 0.915 4 N -0.368 5.368 5 C 0.313 3.687 6 O -0.451 6.451 7 C -0.036 4.036 8 H 0.125 0.875 9 N -0.361 5.361 10 C -0.159 4.159 11 C -0.006 4.006 12 C -0.585 4.585 13 H 0.073 0.927 14 C -0.193 4.193 15 N -0.566 5.566 16 Si 0.784 3.216 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.191 1.191 20 C -0.102 4.102 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.154 4.154 25 C -0.150 4.150 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.051 0.949 29 H 0.246 0.754 30 H 0.167 0.833 31 H 0.156 0.844 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.760 4.612 23.676 24.133 hybrid contribution -1.079 -1.323 -1.611 2.347 sum -1.838 3.289 22.065 22.384 Atomic orbital electron populations 1.22240 0.95130 1.02655 1.01929 1.21005 0.94381 0.96455 0.83915 0.91483 1.46089 1.67084 1.14526 1.09109 1.20693 0.76317 0.86623 0.85028 1.90609 1.51399 1.17541 1.85574 1.21429 0.97780 0.93137 0.91267 0.87469 1.58761 1.38141 1.19867 1.19357 1.22110 0.96825 0.98200 0.98736 1.18959 0.95400 0.93847 0.92443 1.21597 0.95792 1.26416 1.14656 0.92713 1.25870 0.98072 0.97918 0.97433 1.70058 1.21609 1.39778 1.25205 0.85594 0.79253 0.78711 0.78065 1.19652 1.20799 1.19144 1.21339 1.00532 0.95424 0.92898 1.21681 1.01406 0.94329 0.98297 1.21520 1.00767 0.99011 0.94288 1.21538 1.00841 0.95574 0.97679 1.21509 1.00736 0.95700 0.97426 1.21605 1.01430 0.98810 0.93181 0.91352 0.89700 0.94942 0.75362 0.83310 0.84385 0.91618 0.93877 0.98005 0.97959 0.92708 0.90807 0.91161 0.92224 0.92060 0.91689 0.91541 0.91914 0.92128 0.91153 0.91826 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.78 71.98 0.63 -2.78 16 2 C 0.15 3.20 2.40 44.99 0.11 3.30 16 3 H 0.07 1.74 7.58 -2.39 -0.02 1.72 16 4 N -0.72 -17.97 5.00 -442.52 -2.21 -20.18 16 5 C 0.53 17.41 7.04 87.66 0.62 18.03 16 6 O -0.57 -22.65 15.91 -3.02 -0.05 -22.69 16 7 C 0.08 2.71 3.21 44.17 0.14 2.85 16 8 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 9 N -0.83 -29.36 8.94 -171.80 -1.54 -30.90 16 10 C -0.12 -4.68 4.78 30.60 0.15 -4.54 16 11 C 0.03 1.51 4.74 29.85 0.14 1.65 16 12 C -0.55 -30.13 9.11 25.60 0.23 -29.89 16 13 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 14 C 0.01 0.31 5.46 84.65 0.46 0.78 16 15 N -0.93 -54.47 13.29 21.45 0.28 -54.18 16 16 Si 0.96 43.36 29.54 68.60 2.03 45.39 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 C -0.08 -1.32 2.18 -10.79 -0.02 -1.35 16 21 C -0.12 -1.77 4.68 30.59 0.14 -1.63 16 22 C -0.12 -1.53 5.92 30.60 0.18 -1.35 16 23 C -0.12 -1.35 5.92 30.59 0.18 -1.17 16 24 C -0.12 -1.33 5.92 30.59 0.18 -1.15 16 25 C -0.11 -1.50 4.85 30.60 0.15 -1.35 16 26 H 0.07 1.33 6.43 -2.39 -0.02 1.32 16 27 H 0.08 1.42 6.43 -2.39 -0.02 1.41 16 28 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.41 8.71 6.87 -92.71 -0.64 8.08 16 30 H 0.35 12.56 7.55 -89.69 -0.68 11.89 16 31 H 0.34 12.42 8.58 -89.69 -0.77 11.65 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 33 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.00 0.09 6.87 -2.38 -0.02 0.07 16 35 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 36 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.05 6.43 -2.38 -0.02 1.04 16 39 H 0.06 0.93 6.51 -2.39 -0.02 0.91 16 40 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 44 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 47 H 0.07 0.92 6.43 -2.39 -0.02 0.91 16 Total: -1.00 -65.07 360.55 0.69 -64.38 By element: Atomic # 1 Polarization: 37.91 SS G_CDS: -1.12 Total: 36.79 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: 3.29 Total: -18.59 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -3.46 Total: -105.26 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.05 Total: -22.69 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -65.07 0.69 -64.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424081885.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.180 kcal (2) G-P(sol) polarization free energy of solvation -65.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds