Wall clock time and date at job start Tue Mar 31 2020 05:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.47111 * 2 1 4 4 N 1.46499 * 109.46740 * 119.99995 * 2 1 3 5 5 C 1.34772 * 119.99919 * 274.99324 * 4 2 1 6 6 O 1.21279 * 120.00159 * 0.02562 * 5 4 2 7 7 C 1.50707 * 119.99926 * 180.02562 * 5 4 2 8 8 H 1.08990 * 109.46905 * 40.00676 * 7 5 4 9 9 N 1.46898 * 109.47045 * 160.00562 * 7 5 4 10 10 C 1.52996 * 109.47058 * 280.00535 * 7 5 4 11 11 C 1.52998 * 109.46929 * 175.00132 * 10 7 5 12 12 C 1.50706 * 109.47348 * 179.97438 * 11 10 7 13 13 H 1.08000 * 119.99302 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00436 * 179.72505 * 12 11 10 15 15 N 1.31515 * 119.99684 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47154 * 89.99418 * 16 14 12 18 18 H 1.48493 * 109.47010 * 209.99942 * 16 14 12 19 19 H 1.48502 * 109.46736 * 329.99638 * 16 14 12 20 20 C 1.52999 * 109.46999 * 239.99878 * 2 1 3 21 21 C 1.52994 * 109.47108 * 179.97438 * 20 2 1 22 22 C 1.53002 * 109.47364 * 180.02562 * 21 20 2 23 23 C 1.52997 * 109.47114 * 59.99879 * 22 21 20 24 24 C 1.53002 * 109.46877 * 300.00181 * 23 22 21 25 25 C 1.52997 * 109.47031 * 60.00074 * 20 2 1 26 26 H 1.09003 * 109.47015 * 60.00274 * 1 2 3 27 27 H 1.09002 * 109.46504 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46939 * 300.00042 * 1 2 3 29 29 H 0.96998 * 119.99878 * 95.00712 * 4 2 1 30 30 H 1.00906 * 111.00186 * 59.99876 * 9 7 5 31 31 H 1.00895 * 111.00368 * 183.95173 * 9 7 5 32 32 H 1.09000 * 109.47441 * 55.00222 * 10 7 5 33 33 H 1.09002 * 109.47087 * 294.99668 * 10 7 5 34 34 H 1.09001 * 109.47671 * 60.00109 * 11 10 7 35 35 H 1.08998 * 109.47454 * 300.00107 * 11 10 7 36 36 H 0.97004 * 120.00247 * 180.02562 * 15 14 12 37 37 H 1.09001 * 109.46965 * 300.00162 * 20 2 1 38 38 H 1.09001 * 109.47349 * 299.99938 * 21 20 2 39 39 H 1.09000 * 109.47431 * 59.99681 * 21 20 2 40 40 H 1.09003 * 109.46512 * 299.99586 * 22 21 20 41 41 H 1.09001 * 109.47368 * 180.02562 * 22 21 20 42 42 H 1.09003 * 109.47005 * 180.02562 * 23 22 21 43 43 H 1.08994 * 109.47134 * 60.00208 * 23 22 21 44 44 H 1.09000 * 109.47035 * 299.99600 * 24 23 22 45 45 H 1.09003 * 109.46723 * 180.02562 * 24 23 22 46 46 H 1.08999 * 109.47341 * 299.99473 * 25 20 2 47 47 H 1.08995 * 109.47629 * 59.99680 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8584 1.1584 2.4116 7 6 2.6499 -0.7286 3.5875 8 1 3.4563 -1.4077 3.3109 9 7 3.1509 0.2591 4.5526 10 6 1.5067 -1.5249 4.2196 11 6 2.0444 -2.3440 5.3947 12 6 0.9182 -3.1280 6.0178 13 1 -0.0812 -3.0494 5.6160 14 6 1.1647 -3.9493 7.0973 15 7 2.3828 -4.0490 7.5831 16 14 -0.2311 -4.9216 7.8692 17 1 -0.3401 -6.2445 7.2036 18 1 0.0421 -5.1162 9.3158 19 1 -1.5048 -4.1768 7.7019 20 6 2.0400 -0.7213 -1.2492 21 6 3.5700 -0.7207 -1.2496 22 6 4.0800 -1.4415 -2.4991 23 6 3.5695 -0.7201 -3.7480 24 6 2.0395 -0.7207 -3.7477 25 6 1.5300 0.0000 -2.4984 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 2.2491 -1.6317 1.1526 30 1 2.4215 0.9009 4.8250 31 1 3.5526 -0.1950 5.3592 32 1 1.0764 -2.1957 3.4759 33 1 0.7393 -0.8380 4.5766 34 1 2.4747 -1.6733 6.1384 35 1 2.8118 -3.0309 5.0378 36 1 2.5564 -4.6272 8.3424 37 1 1.6767 -1.7489 -1.2492 38 1 3.9330 0.3071 -1.2498 39 1 3.9338 -1.2342 -0.3596 40 1 3.7171 -2.4693 -2.4992 41 1 5.1700 -1.4415 -2.4991 42 1 3.9325 -1.2338 -4.6382 43 1 3.9324 0.3077 -3.7479 44 1 1.6766 -1.7485 -3.7479 45 1 1.6758 -0.2071 -4.6377 46 1 0.4401 -0.0001 -2.4985 47 1 1.8933 1.0276 -2.4985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424081886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:52 Heat of formation + Delta-G solvation = -87.633513 kcal Electronic energy + Delta-G solvation = -22813.951262 eV Core-core repulsion = 19608.317073 eV Total energy + Delta-G solvation = -3205.634189 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.06113 -38.69860 -35.72466 -35.01403 -32.84434 -31.84427 -30.91529 -29.86601 -28.94432 -26.51942 -24.41325 -23.30706 -22.64059 -20.97103 -20.51003 -20.15487 -19.52507 -17.32697 -16.29075 -16.18619 -15.60171 -14.86570 -14.66379 -14.44771 -14.34955 -14.28646 -14.05815 -13.73926 -13.33143 -13.11973 -13.10529 -12.69737 -12.42508 -12.26693 -12.07311 -11.71240 -11.61667 -11.57441 -11.33091 -11.07053 -11.05995 -10.91995 -10.68530 -10.63888 -10.32275 -10.23712 -9.97846 -9.86269 -9.26770 -9.16659 -8.88707 -8.43989 -8.15592 -6.08527 -4.11617 3.01031 3.26794 3.32880 3.33800 3.37286 4.33883 4.39397 4.49222 4.51283 4.85433 4.98815 4.99355 5.13641 5.18804 5.23742 5.25442 5.27828 5.29115 5.33012 5.43728 5.48519 5.58567 5.61534 5.69429 5.79871 5.80528 5.84278 5.91153 5.92469 5.99467 6.01134 6.11634 6.22256 6.29329 6.31636 6.53807 6.68088 6.88918 7.47196 7.52938 7.62732 7.78032 7.88682 7.93312 8.31496 8.55366 8.94414 9.53281 11.02381 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022241 B = 0.003201 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.631595 B = 8744.760646 C = 8983.553637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.148 3.852 3 H 0.085 0.915 4 N -0.729 5.729 5 C 0.527 3.473 6 O -0.540 6.540 7 C 0.074 3.926 8 H 0.095 0.905 9 N -0.831 5.831 10 C -0.136 4.136 11 C 0.024 3.976 12 C -0.524 4.524 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.093 4.093 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.113 4.113 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.399 0.601 30 H 0.345 0.655 31 H 0.353 0.647 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.017 0.983 35 H 0.018 0.982 36 H 0.261 0.739 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.189 5.495 -21.632 22.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.043 3.957 3 H 0.103 0.897 4 N -0.382 5.382 5 C 0.313 3.687 6 O -0.416 6.416 7 C -0.041 4.041 8 H 0.113 0.887 9 N -0.363 5.363 10 C -0.176 4.176 11 C -0.013 4.013 12 C -0.562 4.562 13 H 0.073 0.927 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.112 4.112 21 C -0.152 4.152 22 C -0.157 4.157 23 C -0.158 4.158 24 C -0.156 4.156 25 C -0.151 4.151 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.234 0.766 30 H 0.158 0.842 31 H 0.168 0.832 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.591 6.511 -22.020 23.018 hybrid contribution -1.363 -1.586 1.147 2.385 sum 0.228 4.925 -20.873 21.448 Atomic orbital electron populations 1.22241 0.95592 1.02172 1.02370 1.20904 0.93800 0.97355 0.83648 0.89732 1.46071 1.68478 1.14043 1.09562 1.20852 0.76446 0.87043 0.84312 1.90621 1.49796 1.16213 1.84962 1.21475 0.98405 0.93218 0.91022 0.88738 1.58744 1.38284 1.19911 1.19325 1.22364 0.96452 0.98689 1.00110 1.19101 0.96543 0.94258 0.91382 1.21188 0.94965 1.25730 1.14300 0.92742 1.25012 0.95595 0.96833 0.96884 1.69951 1.19561 1.38761 1.24945 0.86584 0.82504 0.80372 0.78512 1.20618 1.21145 1.19887 1.21437 0.95920 1.00058 0.93792 1.21575 0.94599 1.01134 0.97902 1.21536 1.00218 0.99411 0.94546 1.21547 0.95725 1.00749 0.97772 1.21516 0.95705 1.00771 0.97603 1.21588 1.00615 0.99417 0.93485 0.91725 0.92454 0.92051 0.76639 0.84186 0.83150 0.92597 0.92762 0.96427 0.96351 0.92887 0.90639 0.91912 0.91567 0.91997 0.92067 0.92299 0.92079 0.91996 0.92108 0.91402 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 9.13 37.16 0.34 -1.49 16 2 C 0.15 1.67 2.16 -67.93 -0.15 1.52 16 3 H 0.08 1.12 7.58 -51.93 -0.39 0.72 16 4 N -0.73 -9.33 4.38 -53.80 -0.24 -9.57 16 5 C 0.53 8.71 7.04 -10.98 -0.08 8.63 16 6 O -0.54 -10.58 15.91 5.56 0.09 -10.49 16 7 C 0.07 1.27 3.21 -68.86 -0.22 1.05 16 8 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 9 N -0.83 -14.55 8.94 -5.66 -0.05 -14.60 16 10 C -0.14 -2.69 4.78 -26.73 -0.13 -2.82 16 11 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 12 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 13 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 16 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 C -0.09 -0.81 1.83 -90.62 -0.17 -0.98 16 21 C -0.11 -1.02 5.05 -26.73 -0.13 -1.15 16 22 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 23 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 24 C -0.12 -0.82 5.92 -26.76 -0.16 -0.98 16 25 C -0.11 -0.87 4.85 -26.76 -0.13 -1.00 16 26 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.40 4.42 8.39 -40.82 -0.34 4.08 16 30 H 0.34 6.14 8.58 -39.29 -0.34 5.81 16 31 H 0.35 6.19 7.55 -39.29 -0.30 5.90 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.63 7.45 -51.93 -0.39 0.24 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.50 6.43 -51.93 -0.33 0.16 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 365.94 15.07 5.51 5.51 Total: -1.00 -30.70 365.94 -9.31 -40.02 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -8.66 Total: 10.21 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -1.68 Total: -12.04 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.45 Total: -49.51 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.70 -9.31 -40.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424081886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.616 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds