Wall clock time and date at job start Tue Mar 31 2020 05:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47132 * 2 1 4 4 C 1.52996 * 109.47234 * 120.00090 * 2 1 3 5 5 H 1.08995 * 109.47364 * 299.99982 * 4 2 1 6 6 C 1.53002 * 109.47132 * 179.97438 * 4 2 1 7 7 N 1.46504 * 109.46948 * 60.00036 * 4 2 1 8 8 C 1.34777 * 119.99623 * 239.99982 * 7 4 2 9 9 O 1.21281 * 119.99984 * 176.35715 * 8 7 4 10 10 C 1.50693 * 120.00358 * 356.35136 * 8 7 4 11 11 H 1.08996 * 109.47187 * 44.11779 * 10 8 7 12 12 N 1.46897 * 109.47543 * 164.11766 * 10 8 7 13 13 C 1.52997 * 109.47590 * 284.12015 * 10 8 7 14 14 C 1.53001 * 109.47581 * 174.62908 * 13 10 8 15 15 C 1.50701 * 109.46964 * 179.97438 * 14 13 10 16 16 H 1.07999 * 120.00684 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99544 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99905 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00348 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47065 * 89.99895 * 19 17 15 21 21 H 1.48498 * 109.47363 * 210.00159 * 19 17 15 22 22 H 1.48504 * 109.47056 * 329.99948 * 19 17 15 23 23 C 1.46499 * 120.00260 * 60.00171 * 7 4 2 24 24 C 1.52993 * 117.49772 * 196.84374 * 23 7 4 25 25 C 1.52993 * 60.00243 * 252.50901 * 24 23 7 26 26 H 1.09005 * 109.47459 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47486 * 59.99971 * 1 2 3 28 28 H 1.09002 * 109.47278 * 299.99642 * 1 2 3 29 29 H 1.09002 * 109.47278 * 240.00358 * 2 1 3 30 30 H 1.08995 * 109.46937 * 60.00342 * 3 2 1 31 31 H 1.09007 * 109.47191 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47016 * 299.99798 * 3 2 1 33 33 H 1.08995 * 109.46936 * 60.00181 * 6 4 2 34 34 H 1.09003 * 109.46695 * 180.02562 * 6 4 2 35 35 H 1.08999 * 109.46871 * 299.99866 * 6 4 2 36 36 H 1.00903 * 110.99923 * 296.05293 * 12 10 8 37 37 H 1.00901 * 111.00204 * 59.99859 * 12 10 8 38 38 H 1.09004 * 109.47344 * 294.62808 * 13 10 8 39 39 H 1.08999 * 109.46988 * 54.62599 * 13 10 8 40 40 H 1.08997 * 109.47062 * 300.00086 * 14 13 10 41 41 H 1.08999 * 109.47212 * 59.99828 * 14 13 10 42 42 H 0.97002 * 120.00130 * 179.97438 * 18 17 15 43 43 H 1.09000 * 115.54564 * 342.54755 * 23 7 4 44 44 H 1.08999 * 117.50361 * 359.97438 * 24 23 7 45 45 H 1.09010 * 117.49913 * 145.02201 * 24 23 7 46 46 H 1.09002 * 117.50395 * 252.51656 * 25 24 23 47 47 H 1.09005 * 117.50069 * 107.48956 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 3.5700 -0.7218 1.2488 7 7 1.5516 -2.1025 1.2491 8 6 0.7768 -2.5433 2.2600 9 8 0.3181 -3.6655 2.2276 10 6 0.4804 -1.6418 3.4306 11 1 0.2344 -0.6439 3.0676 12 7 -0.6565 -2.1811 4.1885 13 6 1.7088 -1.5653 4.3394 14 6 1.4564 -0.5479 5.4538 15 6 2.6662 -0.4731 6.3492 16 1 3.5291 -1.0893 6.1438 17 6 2.6719 0.3827 7.4302 18 7 3.7275 0.4477 8.2120 19 14 1.1804 1.4501 7.7844 20 1 0.2512 0.7195 8.6834 21 1 1.6169 2.7087 8.4406 22 1 0.4873 1.7705 6.5107 23 6 1.9055 -3.0046 0.1504 24 6 1.0740 -4.2783 -0.0136 25 6 2.5063 -4.3630 0.5172 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 3.9336 0.3057 1.2487 34 1 3.9332 -1.2361 2.1386 35 1 3.9329 -1.2359 0.3589 36 1 -1.4964 -2.1815 3.6293 37 1 -0.4532 -3.1063 4.5361 38 1 1.8979 -2.5451 4.7780 39 1 2.5749 -1.2559 3.7543 40 1 1.2673 0.4319 5.0153 41 1 0.5903 -0.8573 6.0389 42 1 3.7317 1.0501 8.9723 43 1 2.2702 -2.5210 -0.7558 44 1 0.2638 -4.4454 0.6962 45 1 0.8914 -4.6330 -1.0280 46 1 3.2662 -4.7733 -0.1479 47 1 2.6384 -4.5855 1.5761 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424192502.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:17 Heat of formation + Delta-G solvation = -14.155356 kcal Electronic energy + Delta-G solvation = -24192.287665 eV Core-core repulsion = 20989.839728 eV Total energy + Delta-G solvation = -3202.447937 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.77848 -37.58078 -36.65932 -34.98842 -32.97522 -32.68667 -30.50446 -29.86919 -27.12989 -26.87875 -24.17241 -23.63566 -22.34807 -22.03386 -20.47894 -20.10150 -18.56262 -17.44026 -16.67433 -16.33758 -15.56156 -15.24013 -14.76473 -14.61885 -14.20150 -14.08817 -13.95991 -13.57428 -13.39499 -13.18371 -12.62002 -12.45880 -12.42477 -12.29490 -12.09899 -11.81238 -11.58070 -11.43863 -11.35814 -11.09937 -10.95900 -10.88812 -10.67756 -10.59202 -10.32883 -10.04505 -9.89808 -9.69140 -9.42848 -9.11334 -8.49709 -8.40309 -8.29747 -5.99856 -3.97388 2.62453 2.90938 3.36826 3.43474 3.48458 3.94768 4.45251 4.50725 4.53926 4.72571 4.83173 4.87734 4.89996 5.05422 5.11763 5.19738 5.31918 5.35479 5.40400 5.43891 5.49546 5.53686 5.65520 5.71993 5.73598 5.74262 5.80167 5.88461 5.90651 6.04078 6.09434 6.18514 6.22194 6.33479 6.40119 6.47732 6.79993 6.87402 7.26364 7.37182 7.45883 7.56394 7.66960 7.85832 8.27302 8.57636 9.04872 9.63270 11.13643 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016848 B = 0.005305 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.510485 B = 5276.761212 C = 5776.418208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.104 4.104 3 C -0.149 4.149 4 C 0.133 3.867 5 H 0.105 0.895 6 C -0.165 4.165 7 N -0.572 5.572 8 C 0.488 3.512 9 O -0.546 6.546 10 C 0.072 3.928 11 H 0.097 0.903 12 N -0.810 5.810 13 C -0.090 4.090 14 C -0.003 4.003 15 C -0.520 4.520 16 H 0.069 0.931 17 C 0.067 3.933 18 N -0.906 5.906 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.291 1.291 22 H -0.265 1.265 23 C 0.072 3.928 24 C -0.199 4.199 25 C -0.189 4.189 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.335 0.665 37 H 0.349 0.651 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.011 0.989 41 H 0.029 0.971 42 H 0.262 0.738 43 H 0.122 0.878 44 H 0.145 0.855 45 H 0.081 0.919 46 H 0.092 0.908 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.928 -1.868 -19.994 20.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.207 4.207 4 C 0.030 3.970 5 H 0.123 0.877 6 C -0.222 4.222 7 N -0.302 5.302 8 C 0.276 3.724 9 O -0.425 6.425 10 C -0.044 4.044 11 H 0.115 0.885 12 N -0.338 5.338 13 C -0.128 4.128 14 C -0.041 4.041 15 C -0.558 4.558 16 H 0.087 0.913 17 C -0.134 4.134 18 N -0.545 5.545 19 Si 0.709 3.291 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.189 1.189 23 C -0.033 4.033 24 C -0.236 4.236 25 C -0.227 4.227 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.147 0.853 37 H 0.163 0.837 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.030 0.970 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.139 0.861 44 H 0.162 0.838 45 H 0.100 0.900 46 H 0.110 0.890 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.989 -1.728 -19.322 20.031 hybrid contribution -0.505 -0.169 -0.590 0.795 sum -5.494 -1.897 -19.912 20.743 Atomic orbital electron populations 1.21824 0.94951 1.01924 1.01798 1.21461 0.96291 0.96584 0.97981 1.21894 1.01506 0.95072 1.02241 1.21460 0.95085 0.80862 0.99629 0.87690 1.22225 0.94271 1.02942 1.02797 1.47506 1.49853 1.11560 1.21317 1.22608 0.76916 0.88856 0.83985 1.90415 1.52831 1.20796 1.78445 1.21918 0.95155 0.96990 0.90288 0.88492 1.59053 1.03914 1.31095 1.39777 1.21540 0.92654 1.01842 0.96789 1.19475 0.97820 0.93233 0.93534 1.21162 1.00967 1.23639 1.10025 0.91324 1.25001 0.95859 0.96769 0.95783 1.69924 1.29194 1.38577 1.16851 0.86758 0.83492 0.79973 0.78916 1.20282 1.21707 1.18912 1.21506 1.04995 0.85251 0.91516 1.24061 0.97501 0.99216 1.02801 1.23201 0.96730 1.00443 1.02365 0.92621 0.92712 0.92505 0.91094 0.92015 0.91943 0.92555 0.90799 0.91360 0.92485 0.85328 0.83715 0.92339 0.91898 0.97025 0.95285 0.92850 0.86085 0.83774 0.90034 0.88997 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.04 37.15 0.34 -1.09 16 2 C -0.10 -0.97 2.37 -90.63 -0.21 -1.19 16 3 C -0.15 -1.27 8.84 37.16 0.33 -0.94 16 4 C 0.13 1.52 1.39 -67.93 -0.09 1.42 16 5 H 0.11 1.35 4.88 -51.93 -0.25 1.10 16 6 C -0.16 -1.83 8.68 37.16 0.32 -1.50 16 7 N -0.57 -7.25 1.96 -158.60 -0.31 -7.56 16 8 C 0.49 7.36 6.71 -10.99 -0.07 7.29 16 9 O -0.55 -9.18 12.12 5.56 0.07 -9.11 16 10 C 0.07 1.14 2.28 -68.87 -0.16 0.98 16 11 H 0.10 1.46 6.70 -51.93 -0.35 1.11 16 12 N -0.81 -12.69 8.42 -5.66 -0.05 -12.74 16 13 C -0.09 -1.73 4.46 -26.73 -0.12 -1.85 16 14 C 0.00 -0.07 3.93 -27.88 -0.11 -0.18 16 15 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 16 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 17 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 18 N -0.91 -27.98 13.96 55.43 0.77 -27.20 16 19 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 22 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 23 C 0.07 0.84 5.46 -67.94 -0.37 0.47 16 24 C -0.20 -2.45 9.64 -26.74 -0.26 -2.71 16 25 C -0.19 -2.33 9.90 -26.74 -0.26 -2.59 16 26 H 0.05 0.61 7.60 -51.93 -0.39 0.21 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.63 6.93 -51.93 -0.36 0.27 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.74 6.43 -51.93 -0.33 0.41 16 34 H 0.07 0.90 7.18 -51.93 -0.37 0.53 16 35 H 0.06 0.56 7.64 -51.93 -0.40 0.17 16 36 H 0.33 4.55 9.06 -39.29 -0.36 4.20 16 37 H 0.35 5.58 8.61 -39.29 -0.34 5.24 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.17 5.77 -51.93 -0.30 0.87 16 40 H 0.01 0.27 7.20 -51.93 -0.37 -0.11 16 41 H 0.03 0.70 7.19 -51.93 -0.37 0.33 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 43 H 0.12 1.17 6.96 -51.93 -0.36 0.81 16 44 H 0.14 2.17 4.95 -53.48 -0.26 1.91 16 45 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.09 1.40 7.84 -51.93 -0.41 0.99 16 LS Contribution 357.17 15.07 5.38 5.38 Total: -1.00 -30.99 357.17 -8.02 -39.01 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -8.11 Total: 10.06 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -1.11 Total: -15.06 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.41 Total: -47.51 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.07 Total: -9.11 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.99 -8.02 -39.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424192502.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.855 kcal (2) G-P(sol) polarization free energy of solvation -30.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds