Wall clock time and date at job start Tue Mar 31 2020 05:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46842 * 2 1 4 4 C 1.52991 * 109.47391 * 120.00314 * 2 1 3 5 5 H 1.09001 * 109.47378 * 179.57803 * 4 2 1 6 6 C 1.53010 * 109.47118 * 299.57892 * 4 2 1 7 7 N 1.46504 * 109.47165 * 59.57516 * 4 2 1 8 8 C 1.34779 * 120.00063 * 281.63101 * 7 4 2 9 9 O 1.21277 * 120.00154 * 3.87599 * 8 7 4 10 10 C 1.50698 * 119.99702 * 183.87332 * 8 7 4 11 11 H 1.08997 * 109.47385 * 323.99159 * 10 8 7 12 12 N 1.46899 * 109.46765 * 203.98841 * 10 8 7 13 13 C 1.53005 * 109.46907 * 83.99339 * 10 8 7 14 14 C 1.53003 * 109.46684 * 186.61402 * 13 10 8 15 15 C 1.50704 * 109.46783 * 179.97438 * 14 13 10 16 16 H 1.07994 * 120.00145 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00091 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00209 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99695 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47204 * 90.00019 * 19 17 15 21 21 H 1.48498 * 109.47100 * 209.99845 * 19 17 15 22 22 H 1.48505 * 109.47603 * 330.00122 * 19 17 15 23 23 C 1.46498 * 119.99803 * 101.63298 * 7 4 2 24 24 C 1.53000 * 117.52059 * 358.43610 * 23 7 4 25 25 C 1.53002 * 60.00090 * 107.48125 * 24 23 7 26 26 H 1.08998 * 109.47056 * 298.45610 * 1 2 3 27 27 H 1.09002 * 109.47543 * 58.45752 * 1 2 3 28 28 H 1.09002 * 109.46855 * 178.46112 * 1 2 3 29 29 H 1.08998 * 109.46508 * 240.00479 * 2 1 3 30 30 H 1.08997 * 109.46515 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47254 * 300.00082 * 3 2 1 32 32 H 1.09000 * 109.46759 * 60.00575 * 3 2 1 33 33 H 1.08998 * 109.47228 * 162.09550 * 6 4 2 34 34 H 1.09004 * 109.46662 * 282.09348 * 6 4 2 35 35 H 1.08997 * 109.46707 * 42.09333 * 6 4 2 36 36 H 1.00904 * 110.99883 * 176.04503 * 12 10 8 37 37 H 1.00903 * 111.00608 * 299.99909 * 12 10 8 38 38 H 1.08992 * 109.46903 * 306.61324 * 13 10 8 39 39 H 1.08998 * 109.47352 * 66.62013 * 13 10 8 40 40 H 1.08992 * 109.47387 * 299.99625 * 14 13 10 41 41 H 1.09004 * 109.47058 * 60.00485 * 14 13 10 42 42 H 0.96996 * 120.00475 * 179.97438 * 18 17 15 43 43 H 1.09002 * 115.55105 * 212.73052 * 23 7 4 44 44 H 1.08994 * 117.49942 * 214.97178 * 24 23 7 45 45 H 1.09003 * 117.49633 * 359.97438 * 24 23 7 46 46 H 1.09004 * 117.50005 * 252.51395 * 25 24 23 47 47 H 1.08993 * 117.49693 * 107.49144 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 3.1301 -0.7278 1.2453 6 6 1.5387 0.0060 2.4985 7 7 1.5434 -2.0995 1.2542 8 6 0.2741 -2.3571 1.6272 9 8 -0.4778 -1.4429 1.8908 10 6 -0.2107 -3.7812 1.7164 11 1 0.2475 -4.3714 0.9228 12 7 -1.6718 -3.8112 1.5678 13 6 0.1758 -4.3672 3.0759 14 6 -0.1683 -5.8577 3.1051 15 6 0.2129 -6.4351 4.4440 16 1 0.6559 -5.8022 5.1986 17 6 -0.0038 -7.7714 4.7055 18 7 0.3284 -8.2751 5.8739 19 14 -0.7694 -8.8663 3.3999 20 1 0.3025 -9.4597 2.5608 21 1 -1.5428 -9.9514 4.0552 22 1 -1.6764 -8.0582 2.5457 23 6 2.4265 -3.1978 0.8539 24 6 3.8445 -2.8375 0.4063 25 6 3.6181 -3.5125 1.7606 26 1 -0.3633 0.4897 0.9035 27 1 -0.3634 0.5376 -0.8758 28 1 -0.3633 -1.0273 -0.0276 29 1 1.8932 -0.5138 -0.8900 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6197 -0.6554 3.3610 34 1 2.1426 0.8978 2.6665 35 1 0.4969 0.2938 2.3578 36 1 -2.0151 -4.7600 1.5596 37 1 -2.1203 -3.2707 2.2924 38 1 1.2461 -4.2382 3.2361 39 1 -0.3742 -3.8519 3.8633 40 1 -1.2387 -5.9867 2.9450 41 1 0.3817 -6.3731 2.3177 42 1 0.1756 -9.2151 6.0581 43 1 1.9388 -4.0353 0.3551 44 1 4.2896 -3.4378 -0.3871 45 1 4.1205 -1.7830 0.4091 46 1 3.7452 -2.9020 2.6547 47 1 3.9143 -4.5568 1.8581 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424192503.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:20 Heat of formation + Delta-G solvation = -10.057203 kcal Electronic energy + Delta-G solvation = -24089.076202 eV Core-core repulsion = 20886.805974 eV Total energy + Delta-G solvation = -3202.270228 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.72903 -37.54321 -36.67835 -35.19023 -32.80220 -32.59805 -30.31060 -29.59342 -27.20754 -26.70631 -24.74418 -23.38854 -22.45375 -22.17175 -20.54604 -19.76114 -18.05270 -17.63437 -16.75592 -16.36619 -15.50924 -15.31438 -15.13830 -14.36577 -14.23652 -14.11013 -13.60689 -13.52057 -13.17691 -12.98021 -12.67951 -12.58095 -12.41050 -12.21957 -11.97340 -11.75750 -11.51410 -11.46811 -11.34600 -11.16363 -10.97118 -10.72686 -10.60728 -10.54607 -10.34101 -10.19105 -10.00269 -9.87789 -9.30174 -9.08633 -8.61412 -8.34283 -8.25462 -6.10984 -4.10116 2.85813 2.94129 3.24578 3.33265 3.34601 3.76445 4.38007 4.50806 4.68413 4.75274 4.76824 4.87972 4.94791 5.08129 5.13198 5.22295 5.27228 5.37602 5.44795 5.51500 5.56803 5.67075 5.70765 5.72928 5.80415 5.88000 5.91440 5.96391 6.01716 6.06751 6.17667 6.21367 6.23980 6.37257 6.44527 6.69394 6.70130 6.74880 7.12687 7.23880 7.35176 7.60451 7.68314 7.79892 8.45025 8.46851 8.93465 9.50516 11.02354 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024036 B = 0.004552 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.638376 B = 6149.137480 C = 6581.914148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 C -0.145 4.145 4 C 0.147 3.853 5 H 0.082 0.918 6 C -0.166 4.166 7 N -0.583 5.583 8 C 0.532 3.468 9 O -0.520 6.520 10 C 0.071 3.929 11 H 0.092 0.908 12 N -0.832 5.832 13 C -0.126 4.126 14 C -0.009 4.009 15 C -0.521 4.521 16 H 0.071 0.929 17 C 0.067 3.933 18 N -0.901 5.901 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.265 1.265 23 C 0.072 3.928 24 C -0.187 4.187 25 C -0.186 4.186 26 H 0.069 0.931 27 H 0.033 0.967 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.349 0.651 37 H 0.347 0.653 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.014 0.986 41 H 0.012 0.988 42 H 0.264 0.736 43 H 0.130 0.870 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.097 0.903 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.714 14.534 -13.066 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 C -0.203 4.203 4 C 0.044 3.956 5 H 0.100 0.900 6 C -0.223 4.223 7 N -0.316 5.316 8 C 0.321 3.679 9 O -0.396 6.396 10 C -0.044 4.044 11 H 0.110 0.890 12 N -0.364 5.364 13 C -0.166 4.166 14 C -0.046 4.046 15 C -0.559 4.559 16 H 0.089 0.911 17 C -0.134 4.134 18 N -0.540 5.540 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.190 1.190 23 C -0.033 4.033 24 C -0.225 4.225 25 C -0.225 4.225 26 H 0.088 0.912 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.033 0.967 41 H 0.030 0.970 42 H 0.073 0.927 43 H 0.147 0.853 44 H 0.121 0.879 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.396 15.227 -13.515 21.063 hybrid contribution -0.086 -1.342 0.382 1.398 sum 5.310 13.885 -13.133 19.836 Atomic orbital electron populations 1.22156 0.93657 1.03107 1.00844 1.21513 0.97616 0.95707 0.97481 1.21835 1.00400 0.95990 1.02031 1.21127 0.98154 0.80609 0.95667 0.89968 1.22325 1.04090 0.99606 0.96326 1.47506 1.11438 1.05775 1.66874 1.20516 0.80474 0.91408 0.75513 1.90628 1.54402 1.46301 1.48243 1.21575 0.90733 0.92264 0.99810 0.88984 1.58785 1.03094 1.18841 1.55655 1.22143 1.01894 0.98780 0.93773 1.19555 0.96160 0.90957 0.97937 1.21066 1.41431 0.94888 0.98546 0.91124 1.25034 0.95030 0.98041 0.95302 1.69907 1.48078 1.13915 1.22103 0.86779 0.79898 0.80466 0.82112 1.20288 1.21359 1.18993 1.21763 0.86021 0.92433 1.03102 1.23377 0.97926 1.01981 0.99210 1.23443 1.02259 1.02521 0.94235 0.91208 0.94800 0.91507 0.91644 0.93062 0.92721 0.92240 0.92725 0.92774 0.89008 0.83652 0.83918 0.91741 0.92283 0.96743 0.96958 0.92663 0.85279 0.87927 0.88314 0.88456 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 7.39 37.16 0.27 -1.57 16 2 C -0.10 -1.13 2.94 -90.62 -0.27 -1.40 16 3 C -0.14 -1.29 8.88 37.16 0.33 -0.96 16 4 C 0.15 1.70 2.47 -67.93 -0.17 1.53 16 5 H 0.08 0.84 5.57 -51.93 -0.29 0.55 16 6 C -0.17 -2.07 7.23 37.16 0.27 -1.80 16 7 N -0.58 -7.58 2.71 -158.58 -0.43 -8.01 16 8 C 0.53 8.28 5.04 -10.99 -0.06 8.22 16 9 O -0.52 -8.89 10.28 5.56 0.06 -8.84 16 10 C 0.07 1.14 2.54 -68.86 -0.17 0.97 16 11 H 0.09 1.40 6.24 -51.93 -0.32 1.07 16 12 N -0.83 -13.31 8.99 -5.65 -0.05 -13.36 16 13 C -0.13 -2.40 4.77 -26.73 -0.13 -2.53 16 14 C -0.01 -0.19 3.83 -27.88 -0.11 -0.30 16 15 C -0.52 -14.43 9.66 -34.44 -0.33 -14.76 16 16 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 17 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 19 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 23 C 0.07 0.83 5.62 -67.93 -0.38 0.45 16 24 C -0.19 -1.72 9.74 -26.73 -0.26 -1.98 16 25 C -0.19 -2.07 10.36 -26.73 -0.28 -2.35 16 26 H 0.07 0.99 5.43 -51.93 -0.28 0.71 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 1.03 5.33 -51.93 -0.28 0.76 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.54 6.85 -51.93 -0.36 0.18 16 33 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.05 0.56 7.47 -51.93 -0.39 0.17 16 35 H 0.09 1.30 4.38 -51.93 -0.23 1.07 16 36 H 0.35 5.49 7.61 -39.29 -0.30 5.19 16 37 H 0.35 5.66 8.56 -39.29 -0.34 5.32 16 38 H 0.06 1.23 7.87 -51.93 -0.41 0.82 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.01 0.32 5.97 -51.93 -0.31 0.01 16 41 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.13 1.47 6.45 -51.93 -0.33 1.13 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.10 0.84 5.98 -51.93 -0.31 0.53 16 46 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 350.91 15.07 5.29 5.29 Total: -1.00 -30.13 350.91 -8.33 -38.46 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -7.92 Total: 11.30 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -1.37 Total: -14.65 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.29 Total: -47.96 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.06 Total: -8.84 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.13 -8.33 -38.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424192503.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.404 kcal (2) G-P(sol) polarization free energy of solvation -30.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds