Wall clock time and date at job start Tue Mar 31 2020 05:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46888 * 2 1 4 4 C 1.52995 * 109.47573 * 240.00060 * 2 1 3 5 5 H 1.09001 * 109.47111 * 55.71985 * 4 2 1 6 6 C 1.52995 * 109.47575 * 175.72509 * 4 2 1 7 7 N 1.46505 * 109.47029 * 295.72431 * 4 2 1 8 8 C 1.34774 * 120.00106 * 124.85577 * 7 4 2 9 9 O 1.21276 * 119.99954 * 176.37539 * 8 7 4 10 10 C 1.50699 * 119.99924 * 356.37964 * 8 7 4 11 11 H 1.09000 * 109.47358 * 32.83195 * 10 8 7 12 12 N 1.46902 * 109.47195 * 152.83088 * 10 8 7 13 13 C 1.52998 * 109.47074 * 272.82849 * 10 8 7 14 14 C 1.52997 * 109.47144 * 175.05707 * 13 10 8 15 15 C 1.50702 * 109.47288 * 179.97438 * 14 13 10 16 16 H 1.08003 * 119.99863 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00405 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00012 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00339 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47062 * 90.00227 * 19 17 15 21 21 H 1.48504 * 109.47321 * 209.99921 * 19 17 15 22 22 H 1.48497 * 109.47355 * 330.00384 * 19 17 15 23 23 C 1.46503 * 119.99594 * 304.86016 * 7 4 2 24 24 C 1.52999 * 117.49460 * 196.91998 * 23 7 4 25 25 C 1.52992 * 60.00163 * 252.51183 * 24 23 7 26 26 H 1.09005 * 109.47102 * 176.39778 * 1 2 3 27 27 H 1.08994 * 109.47309 * 296.39941 * 1 2 3 28 28 H 1.09002 * 109.46926 * 56.40170 * 1 2 3 29 29 H 1.09001 * 109.47357 * 119.99550 * 2 1 3 30 30 H 1.09000 * 109.47268 * 299.99811 * 3 2 1 31 31 H 1.08998 * 109.47442 * 59.99419 * 3 2 1 32 32 H 1.08996 * 109.47161 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46879 * 299.99888 * 6 4 2 34 34 H 1.09001 * 109.47330 * 59.99609 * 6 4 2 35 35 H 1.09000 * 109.47296 * 179.97438 * 6 4 2 36 36 H 1.00910 * 110.99957 * 59.99484 * 12 10 8 37 37 H 1.00898 * 111.00521 * 183.94965 * 12 10 8 38 38 H 1.09005 * 109.47171 * 295.05643 * 13 10 8 39 39 H 1.08993 * 109.47151 * 55.05853 * 13 10 8 40 40 H 1.08996 * 109.47150 * 300.00159 * 14 13 10 41 41 H 1.09003 * 109.47294 * 60.00529 * 14 13 10 42 42 H 0.96994 * 120.00087 * 179.97438 * 18 17 15 43 43 H 1.08993 * 115.55267 * 342.63078 * 23 7 4 44 44 H 1.09002 * 117.50252 * 0.02562 * 24 23 7 45 45 H 1.09003 * 117.49610 * 145.01961 * 24 23 7 46 46 H 1.09002 * 117.50445 * 252.51457 * 25 24 23 47 47 H 1.09003 * 117.49731 * 107.48979 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 1 1.6155 -0.2536 -2.1375 6 6 3.5663 -0.6287 -1.3041 7 7 1.6377 -2.1290 -1.1988 8 6 0.9398 -2.6673 -2.2184 9 8 0.6635 -3.8481 -2.2074 10 6 0.5028 -1.8018 -3.3722 11 1 1.2454 -1.0226 -3.5435 12 7 0.3708 -2.6267 -4.5805 13 6 -0.8459 -1.1580 -3.0445 14 6 -1.2309 -0.1847 -4.1604 15 6 -2.5596 0.4491 -3.8380 16 1 -3.0778 0.1839 -2.9283 17 6 -3.1137 1.3676 -4.7042 18 7 -2.4829 1.6902 -5.8122 19 14 -4.7603 2.1536 -4.3042 20 1 -4.5385 3.3965 -3.5224 21 1 -5.4712 2.4828 -5.5658 22 1 -5.5801 1.2067 -3.5065 23 6 1.9939 -2.9516 -0.0400 24 6 1.9094 -4.4709 -0.1995 25 6 0.8699 -3.7315 0.6450 26 1 -0.3633 -1.0257 -0.0646 27 1 -0.3633 0.4569 0.9204 28 1 -0.3633 0.5687 -0.8560 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6765 1.9564 0.8899 32 1 3.1299 1.4426 -0.0005 33 1 3.8657 0.4187 -1.3416 34 1 3.9908 -1.0964 -0.4157 35 1 3.9297 -1.1430 -2.1938 36 1 -0.3125 -3.3572 -4.4469 37 1 0.1413 -2.0592 -5.3826 38 1 -1.6076 -1.9331 -2.9596 39 1 -0.7708 -0.6175 -2.1010 40 1 -0.4693 0.5904 -4.2453 41 1 -1.3061 -0.7251 -5.1040 42 1 -2.8728 2.3361 -6.4218 43 1 2.7886 -2.5549 0.5916 44 1 1.5893 -4.8584 -1.1667 45 1 2.6490 -5.0741 0.3272 46 1 0.9253 -3.8481 1.7273 47 1 -0.1347 -3.6324 0.2335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424192507.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:24 Heat of formation + Delta-G solvation = -15.366542 kcal Electronic energy + Delta-G solvation = -24255.733174 eV Core-core repulsion = 21053.232716 eV Total energy + Delta-G solvation = -3202.500458 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.60669 -37.39586 -36.60484 -34.95575 -33.01982 -32.66942 -30.05982 -29.64655 -26.89421 -26.69896 -24.27219 -23.59331 -22.33497 -22.10790 -20.56728 -19.99506 -18.43151 -17.47390 -16.34527 -16.13761 -15.26516 -14.91397 -14.48400 -14.46985 -14.36838 -14.10267 -13.80178 -13.35774 -13.34296 -13.16223 -12.85033 -12.29496 -12.16794 -12.11867 -12.02098 -11.81837 -11.52574 -11.29193 -11.17048 -11.05019 -10.91154 -10.83145 -10.64883 -10.58412 -10.42032 -10.24502 -9.89289 -9.68319 -9.24496 -8.87404 -8.43739 -8.30178 -8.12259 -6.08805 -4.11694 2.85515 2.98430 3.26317 3.33463 3.36818 4.04043 4.38836 4.54166 4.67335 4.89489 4.96344 5.00024 5.13121 5.14885 5.25329 5.27654 5.31080 5.40223 5.47637 5.56013 5.62484 5.73454 5.76511 5.80885 5.82486 5.86112 5.89956 6.01375 6.05803 6.14366 6.20804 6.31680 6.35153 6.46341 6.51721 6.60843 6.90366 6.92943 7.42722 7.52071 7.60496 7.66396 7.88379 7.90776 8.31299 8.49778 8.94213 9.53297 11.02097 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017169 B = 0.005200 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.479973 B = 5383.035067 C = 5969.274136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.100 4.100 3 C -0.150 4.150 4 C 0.133 3.867 5 H 0.104 0.896 6 C -0.165 4.165 7 N -0.578 5.578 8 C 0.531 3.469 9 O -0.532 6.532 10 C 0.071 3.929 11 H 0.094 0.906 12 N -0.832 5.832 13 C -0.148 4.148 14 C 0.027 3.973 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.890 3.110 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.076 3.924 24 C -0.199 4.199 25 C -0.190 4.190 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.345 0.655 37 H 0.354 0.646 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.017 0.983 41 H 0.016 0.984 42 H 0.261 0.739 43 H 0.121 0.879 44 H 0.147 0.853 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.557 -3.935 11.857 17.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.119 4.119 3 C -0.207 4.207 4 C 0.029 3.971 5 H 0.122 0.878 6 C -0.223 4.223 7 N -0.309 5.309 8 C 0.321 3.679 9 O -0.409 6.409 10 C -0.043 4.043 11 H 0.112 0.888 12 N -0.364 5.364 13 C -0.188 4.188 14 C -0.010 4.010 15 C -0.560 4.560 16 H 0.072 0.928 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.718 3.282 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.029 4.029 24 C -0.236 4.236 25 C -0.229 4.229 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.159 0.841 37 H 0.169 0.831 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.071 0.929 43 H 0.139 0.861 44 H 0.164 0.836 45 H 0.100 0.900 46 H 0.109 0.891 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.169 -4.627 11.787 17.562 hybrid contribution -1.914 0.972 0.308 2.168 sum 10.255 -3.655 12.094 16.273 Atomic orbital electron populations 1.21986 0.94315 1.02384 1.02349 1.21409 0.96861 0.96156 0.97460 1.21914 1.00816 0.95460 1.02540 1.21429 0.95068 0.80413 1.00168 0.87830 1.22249 0.95108 1.02572 1.02368 1.47363 1.54829 1.10425 1.18272 1.20904 0.76069 0.88095 0.82841 1.90389 1.55656 1.16208 1.78694 1.21585 0.99328 0.93982 0.89436 0.88793 1.58793 1.56868 1.16246 1.04485 1.22585 0.93439 0.99991 1.02749 1.19075 0.96554 0.93033 0.92388 1.21160 1.04764 1.23687 1.06348 0.92770 1.24991 0.97530 0.96659 0.95005 1.69948 1.38694 1.33498 1.11062 0.86616 0.84057 0.79692 0.77803 1.20613 1.21162 1.19902 1.21439 1.00107 0.90401 0.90938 1.24090 1.01141 0.93224 1.05132 1.23203 0.96135 1.05395 0.98156 0.92448 0.92914 0.91038 0.91172 0.91894 0.92516 0.92393 0.90882 0.92464 0.92124 0.84142 0.83112 0.92813 0.91263 0.96489 0.96548 0.92909 0.86110 0.83564 0.90038 0.89107 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 7.85 37.16 0.29 -1.72 16 2 C -0.10 -1.09 2.39 -90.62 -0.22 -1.31 16 3 C -0.15 -1.46 8.73 37.16 0.32 -1.13 16 4 C 0.13 1.58 2.07 -67.93 -0.14 1.44 16 5 H 0.10 1.40 5.25 -51.93 -0.27 1.12 16 6 C -0.16 -1.63 8.79 37.16 0.33 -1.30 16 7 N -0.58 -7.89 2.09 -158.59 -0.33 -8.22 16 8 C 0.53 8.88 6.64 -10.99 -0.07 8.81 16 9 O -0.53 -10.00 12.20 5.56 0.07 -9.94 16 10 C 0.07 1.23 2.40 -68.87 -0.16 1.07 16 11 H 0.09 1.56 6.11 -51.93 -0.32 1.24 16 12 N -0.83 -14.44 9.00 -5.65 -0.05 -14.49 16 13 C -0.15 -2.91 4.69 -26.73 -0.13 -3.04 16 14 C 0.03 0.64 4.74 -27.88 -0.13 0.51 16 15 C -0.52 -14.12 9.11 -34.44 -0.31 -14.43 16 16 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 19 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 C 0.08 0.94 5.33 -67.93 -0.36 0.57 16 24 C -0.20 -2.63 9.64 -26.74 -0.26 -2.89 16 25 C -0.19 -2.42 9.90 -26.74 -0.26 -2.69 16 26 H 0.06 0.83 7.32 -51.93 -0.38 0.45 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.08 6.61 -51.93 -0.34 0.74 16 29 H 0.07 0.72 7.20 -51.93 -0.37 0.35 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.48 6.35 -51.93 -0.33 0.15 16 33 H 0.07 0.62 6.35 -51.93 -0.33 0.29 16 34 H 0.06 0.51 7.19 -51.93 -0.37 0.14 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.35 6.09 8.55 -39.29 -0.34 5.75 16 37 H 0.35 6.16 7.55 -39.29 -0.30 5.86 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.07 1.30 4.50 -51.93 -0.23 1.07 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.02 0.41 6.87 -51.93 -0.36 0.05 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.12 1.23 7.00 -51.93 -0.36 0.86 16 44 H 0.15 2.40 4.95 -53.44 -0.26 2.13 16 45 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.09 1.42 7.83 -51.93 -0.41 1.01 16 LS Contribution 356.00 15.07 5.36 5.36 Total: -1.00 -29.34 356.00 -8.34 -37.68 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -7.90 Total: 13.07 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -1.20 Total: -14.55 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 0.35 Total: -47.76 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.07 Total: -9.94 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.34 -8.34 -37.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424192507.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.314 kcal (2) G-P(sol) polarization free energy of solvation -29.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds