Wall clock time and date at job start Tue Mar 31 2020 05:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46967 * 2 1 4 4 C 1.52994 * 109.47204 * 120.00165 * 2 1 3 5 5 N 1.46494 * 109.47208 * 64.99909 * 4 2 1 6 6 C 1.46015 * 118.53446 * 90.00444 * 5 4 2 7 7 C 1.52977 * 110.04396 * 161.86294 * 6 5 4 8 8 N 1.47190 * 108.73288 * 50.28536 * 7 6 5 9 9 C 1.46902 * 110.99869 * 54.36946 * 8 7 6 10 10 C 1.52999 * 109.47065 * 64.56122 * 9 8 7 11 11 C 1.52997 * 109.47375 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47662 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99376 * 0.02562 * 12 11 10 14 14 C 1.37868 * 120.00383 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00116 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00052 * 0.02562 * 14 12 11 17 17 H 1.48505 * 109.47061 * 90.00047 * 16 14 12 18 18 H 1.48507 * 109.47422 * 209.99791 * 16 14 12 19 19 H 1.48498 * 109.47230 * 329.99753 * 16 14 12 20 20 C 1.46907 * 110.17631 * 291.00647 * 8 7 6 21 21 H 1.08995 * 109.38397 * 290.13758 * 20 8 7 22 22 C 1.52999 * 109.38502 * 170.45236 * 20 8 7 23 23 C 1.33712 * 118.53760 * 270.02004 * 5 4 2 24 24 O 1.21276 * 118.62439 * 1.66713 * 23 5 4 25 25 H 1.08995 * 109.47194 * 299.99927 * 1 2 3 26 26 H 1.09002 * 109.47216 * 59.99817 * 1 2 3 27 27 H 1.09000 * 109.46834 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47106 * 240.00338 * 2 1 3 29 29 H 1.08998 * 109.47058 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47301 * 300.00130 * 3 2 1 31 31 H 1.08995 * 109.47103 * 60.00017 * 3 2 1 32 32 H 1.09003 * 109.46777 * 304.99961 * 4 2 1 33 33 H 1.09003 * 109.47211 * 185.00483 * 4 2 1 34 34 H 1.08993 * 109.37925 * 41.67959 * 6 5 4 35 35 H 1.09006 * 109.27638 * 281.97288 * 6 5 4 36 36 H 1.09003 * 109.59303 * 290.51519 * 7 6 5 37 37 H 1.09003 * 109.59673 * 170.06210 * 7 6 5 38 38 H 1.09000 * 109.47258 * 304.56765 * 9 8 7 39 39 H 1.09004 * 109.47526 * 184.56514 * 9 8 7 40 40 H 1.08994 * 109.47697 * 300.00189 * 10 9 8 41 41 H 1.09007 * 109.47201 * 60.00372 * 10 9 8 42 42 H 1.09004 * 109.47439 * 300.00529 * 11 10 9 43 43 H 1.09000 * 109.47036 * 60.00590 * 11 10 9 44 44 H 0.96996 * 120.00276 * 180.02562 * 15 14 12 45 45 H 1.08995 * 109.47660 * 52.93648 * 22 20 8 46 46 H 1.09001 * 109.47124 * 172.94057 * 22 20 8 47 47 H 1.09000 * 109.46974 * 292.93358 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 -2.1328 1.1905 6 6 2.5641 -3.0806 0.5559 7 6 2.2165 -4.5080 0.9823 8 7 0.7741 -4.7229 0.7834 9 6 0.3806 -4.4096 -0.5969 10 6 1.0623 -5.3876 -1.5559 11 6 0.6520 -5.0619 -2.9934 12 6 1.3230 -6.0256 -3.9380 13 1 1.9763 -6.7938 -3.5516 14 6 1.1028 -5.9264 -5.2954 15 7 1.6879 -6.7678 -6.1197 16 14 -0.0267 -4.5972 -5.9638 17 1 0.7651 -3.3749 -6.2544 18 1 -0.6719 -5.0774 -7.2122 19 1 -1.0712 -4.2825 -4.9563 20 6 0.0051 -3.9212 1.7447 21 1 0.1396 -4.3301 2.7461 22 6 -1.4785 -3.9692 1.3740 23 6 0.4796 -2.4957 1.7201 24 8 -0.2310 -1.6385 2.2007 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6054 -0.2617 2.1369 33 1 3.1263 -0.6443 1.2951 34 1 3.5874 -2.8531 0.8541 35 1 2.4755 -2.9950 -0.5271 36 1 2.4649 -4.6459 2.0347 37 1 2.7789 -5.2179 0.3757 38 1 0.6850 -3.3915 -0.8393 39 1 -0.7013 -4.4986 -0.6955 40 1 2.1441 -5.2987 -1.4574 41 1 0.7579 -6.4059 -1.3136 42 1 -0.4299 -5.1512 -3.0917 43 1 0.9561 -4.0437 -3.2361 44 1 1.5333 -6.6978 -7.0747 45 1 -1.7957 -5.0075 1.2777 46 1 -2.0638 -3.4813 2.1535 47 1 -1.6332 -3.4527 0.4267 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426218053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:03 Heat of formation + Delta-G solvation = -39.667967 kcal Electronic energy + Delta-G solvation = -24077.081567 eV Core-core repulsion = 20873.527320 eV Total energy + Delta-G solvation = -3203.554247 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.18720 -37.82468 -36.67830 -34.39656 -33.74422 -31.94390 -30.95798 -28.47842 -27.23604 -27.10811 -26.48367 -24.01931 -22.96799 -21.74819 -20.37065 -19.99927 -18.18745 -17.14300 -16.70215 -16.64558 -16.11646 -15.66511 -14.98472 -14.78207 -14.37617 -14.06887 -13.74396 -13.47598 -13.25209 -13.11802 -12.71421 -12.58017 -12.37423 -12.21431 -12.01831 -11.92533 -11.82435 -11.72800 -11.50308 -11.30121 -11.10664 -10.96997 -10.89571 -10.76535 -10.59737 -10.21330 -9.93051 -9.70576 -9.61907 -9.19283 -8.76227 -8.55078 -8.19214 -6.05580 -4.03443 2.56776 2.82368 3.28812 3.36996 3.40620 3.89182 4.33879 4.43898 4.68853 4.78206 4.80027 4.81609 4.97261 4.99173 5.14886 5.22844 5.28710 5.30621 5.43168 5.50085 5.54677 5.57806 5.69119 5.72648 5.76863 5.80961 5.81988 5.83384 5.91086 6.00602 6.05345 6.15739 6.17929 6.33801 6.38765 6.45070 6.51263 6.81690 6.98783 7.06780 7.30435 7.34303 7.41916 7.78425 8.09975 8.52939 8.99761 9.57313 11.07911 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015936 B = 0.005069 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.658768 B = 5522.266644 C = 6257.226385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 C -0.143 4.143 4 C 0.115 3.885 5 N -0.603 5.603 6 C 0.072 3.928 7 C 0.037 3.963 8 N -0.520 5.520 9 C 0.037 3.963 10 C -0.096 4.096 11 C -0.012 4.012 12 C -0.518 4.518 13 H 0.072 0.928 14 C 0.067 3.933 15 N -0.904 5.904 16 Si 0.878 3.122 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.266 1.266 20 C 0.068 3.932 21 H 0.111 0.889 22 C -0.136 4.136 23 C 0.490 3.510 24 O -0.545 6.545 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.036 0.964 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.015 0.985 43 H 0.007 0.993 44 H 0.263 0.737 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.708 11.326 16.734 20.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.132 4.132 3 C -0.201 4.201 4 C -0.008 4.008 5 N -0.335 5.335 6 C -0.053 4.053 7 C -0.092 4.092 8 N -0.243 5.243 9 C -0.090 4.090 10 C -0.133 4.133 11 C -0.050 4.050 12 C -0.556 4.556 13 H 0.090 0.910 14 C -0.134 4.134 15 N -0.543 5.543 16 Si 0.705 3.295 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.190 1.190 20 C -0.043 4.043 21 H 0.128 0.872 22 C -0.194 4.194 23 C 0.277 3.723 24 O -0.422 6.422 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.124 0.876 38 H 0.054 0.946 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.033 0.967 43 H 0.025 0.975 44 H 0.072 0.928 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.229 11.194 16.892 20.266 hybrid contribution -0.154 1.523 -0.818 1.735 sum 0.075 12.716 16.075 20.496 Atomic orbital electron populations 1.21784 0.94320 1.02031 1.01116 1.21494 0.97117 0.96203 0.98411 1.21758 1.00682 0.95611 1.02012 1.21614 0.99325 0.80813 0.99020 1.47521 1.19414 1.08664 1.57949 1.22217 0.93672 0.90346 0.99016 1.22598 0.89891 0.94072 1.02606 1.62747 1.03506 1.53308 1.04765 1.22617 1.01489 0.98581 0.86317 1.21465 0.99024 0.98234 0.94622 1.19538 0.96703 0.96565 0.92214 1.21117 1.28362 1.15393 0.90710 0.90986 1.25019 0.95575 0.95752 0.97090 1.69911 1.43949 1.37217 1.03215 0.86813 0.81760 0.82356 0.78556 1.20418 1.21364 1.19028 1.21947 0.96130 0.87196 0.99070 0.87159 1.21782 0.92178 1.03148 1.02298 1.21276 0.80786 0.92786 0.77491 1.90670 1.53369 1.51699 1.46464 0.92290 0.93556 0.92879 0.91118 0.92720 0.92400 0.92617 0.89839 0.90832 0.90304 0.90479 0.90219 0.87551 0.94623 0.90247 0.92871 0.91766 0.96674 0.97460 0.92760 0.90495 0.91177 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 7.85 37.16 0.29 -1.47 16 2 C -0.11 -1.27 3.13 -90.62 -0.28 -1.55 16 3 C -0.14 -1.31 9.19 37.16 0.34 -0.96 16 4 C 0.11 1.25 4.94 -4.05 -0.02 1.23 16 5 N -0.60 -7.24 2.56 -174.59 -0.45 -7.69 16 6 C 0.07 0.78 5.67 -4.32 -0.02 0.76 16 7 C 0.04 0.41 5.62 -3.68 -0.02 0.39 16 8 N -0.52 -6.78 4.93 -228.06 -1.12 -7.91 16 9 C 0.04 0.57 3.84 -3.82 -0.01 0.55 16 10 C -0.10 -1.78 5.04 -26.73 -0.13 -1.91 16 11 C -0.01 -0.28 4.04 -27.88 -0.11 -0.40 16 12 C -0.52 -14.50 9.66 -34.44 -0.33 -14.83 16 13 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 14 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 15 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 16 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 20 C 0.07 0.85 3.02 -69.08 -0.21 0.64 16 21 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 22 C -0.14 -1.66 7.82 37.16 0.29 -1.37 16 23 C 0.49 6.65 5.20 -11.67 -0.06 6.59 16 24 O -0.55 -8.65 13.53 5.56 0.08 -8.58 16 25 H 0.06 0.79 7.84 -51.93 -0.41 0.38 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.80 6.02 -51.93 -0.31 0.49 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 1.00 7.26 -51.93 -0.38 0.62 16 33 H 0.07 0.65 7.92 -51.93 -0.41 0.24 16 34 H 0.08 0.68 7.98 -51.93 -0.41 0.27 16 35 H 0.08 0.97 6.77 -51.93 -0.35 0.62 16 36 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 37 H 0.11 1.19 6.71 -51.93 -0.35 0.84 16 38 H 0.04 0.57 5.71 -51.93 -0.30 0.27 16 39 H 0.08 1.25 5.87 -51.93 -0.30 0.95 16 40 H 0.05 0.95 6.63 -51.93 -0.34 0.61 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 43 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.07 0.82 8.03 -51.93 -0.42 0.40 16 47 H 0.06 0.81 6.62 -51.93 -0.34 0.46 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -31.25 351.34 -8.97 -40.22 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -8.48 Total: -0.92 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -0.39 Total: -10.50 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: -0.80 Total: -42.53 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.08 Total: -8.58 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.25 -8.97 -40.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426218053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.549 kcal (2) G-P(sol) polarization free energy of solvation -31.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds