Wall clock time and date at job start Tue Mar 31 2020 05:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47052 * 2 1 4 4 C 1.53000 * 109.47250 * 120.00216 * 2 1 3 5 5 N 1.46498 * 109.47395 * 64.99505 * 4 2 1 6 6 C 1.46009 * 118.53281 * 89.99989 * 5 4 2 7 7 C 1.52987 * 110.04075 * 198.14019 * 6 5 4 8 8 N 1.47185 * 108.72818 * 309.70764 * 7 6 5 9 9 C 1.46904 * 111.00236 * 305.63373 * 8 7 6 10 10 C 1.52996 * 109.46843 * 301.70633 * 9 8 7 11 11 C 1.53004 * 109.46987 * 185.17016 * 10 9 8 12 12 C 1.50702 * 109.47171 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99937 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99808 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99992 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99866 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47282 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47181 * 119.99573 * 16 14 12 19 19 H 1.48497 * 109.47425 * 239.99593 * 16 14 12 20 20 C 1.46903 * 110.17588 * 69.00126 * 8 7 6 21 21 H 1.08999 * 109.38424 * 69.85264 * 20 8 7 22 22 C 1.52996 * 109.38984 * 189.54613 * 20 8 7 23 23 C 1.33714 * 118.53971 * 269.98401 * 5 4 2 24 24 O 1.21287 * 118.62063 * 358.33199 * 23 5 4 25 25 H 1.08997 * 109.47488 * 59.99914 * 1 2 3 26 26 H 1.08998 * 109.47221 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47011 * 300.00289 * 1 2 3 28 28 H 1.08999 * 109.47119 * 240.00196 * 2 1 3 29 29 H 1.09007 * 109.47175 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47114 * 299.99826 * 3 2 1 31 31 H 1.08996 * 109.47717 * 60.00145 * 3 2 1 32 32 H 1.09000 * 109.46730 * 304.99494 * 4 2 1 33 33 H 1.09001 * 109.47218 * 185.00128 * 4 2 1 34 34 H 1.09000 * 109.37560 * 77.96830 * 6 5 4 35 35 H 1.08999 * 109.37633 * 318.31378 * 6 5 4 36 36 H 1.08998 * 109.59034 * 189.93336 * 7 6 5 37 37 H 1.09001 * 109.72023 * 69.55776 * 7 6 5 38 38 H 1.09002 * 109.47046 * 181.70773 * 9 8 7 39 39 H 1.09000 * 109.46767 * 61.71175 * 9 8 7 40 40 H 1.09001 * 109.47352 * 65.17549 * 10 9 8 41 41 H 1.08999 * 109.47252 * 305.17230 * 10 9 8 42 42 H 1.08999 * 109.47299 * 300.00185 * 11 10 9 43 43 H 1.09001 * 109.46640 * 60.00096 * 11 10 9 44 44 H 0.97003 * 119.99507 * 179.97438 * 15 14 12 45 45 H 1.08994 * 109.47088 * 59.99759 * 22 20 8 46 46 H 1.09001 * 109.47198 * 179.97438 * 22 20 8 47 47 H 1.09010 * 109.46983 * 299.99697 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1328 1.1906 6 6 2.5639 -3.0806 0.5560 7 6 1.8162 -4.3655 0.1948 8 7 1.0765 -4.8307 1.3792 9 6 1.9714 -4.9766 2.5351 10 6 3.0892 -5.9637 2.1932 11 6 3.9459 -6.2145 3.4358 12 6 5.0473 -7.1863 3.0989 13 1 5.1280 -7.5855 2.0986 14 6 5.9514 -7.5665 4.0679 15 7 5.8529 -7.0808 5.2861 16 14 7.3171 -8.7706 3.6501 17 1 7.2103 -9.1643 2.2222 18 1 8.6342 -8.1273 3.8883 19 1 7.1931 -9.9767 4.5073 20 6 -0.0274 -3.9097 1.6811 21 1 -0.7931 -3.9977 0.9103 22 6 -0.6329 -4.2704 3.0391 23 6 0.4799 -2.4959 1.7209 24 8 -0.2027 -1.6485 2.2567 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6055 -0.2617 2.1369 33 1 3.1264 -0.6444 1.2951 34 1 3.3767 -3.3162 1.2431 35 1 2.9758 -2.6352 -0.3496 36 1 2.5300 -5.1294 -0.1136 37 1 1.1176 -4.1684 -0.6183 38 1 1.4050 -5.3503 3.3882 39 1 2.4052 -4.0079 2.7832 40 1 3.7115 -5.5477 1.4008 41 1 2.6530 -6.9042 1.8567 42 1 4.3821 -5.2739 3.7723 43 1 3.3236 -6.6304 4.2282 44 1 6.4888 -7.3486 5.9679 45 1 0.1317 -4.1877 3.8113 46 1 -1.4520 -3.5874 3.2646 47 1 -1.0098 -5.2928 3.0088 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426218055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:05 Heat of formation + Delta-G solvation = -44.018226 kcal Electronic energy + Delta-G solvation = -23707.935501 eV Core-core repulsion = 20504.192612 eV Total energy + Delta-G solvation = -3203.742889 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.10978 -37.78785 -36.67830 -34.28129 -33.71011 -31.86666 -30.79207 -28.26040 -27.34918 -26.88838 -26.33493 -24.01749 -22.89748 -21.89035 -20.40195 -19.99302 -18.20686 -17.05472 -16.75968 -16.23555 -15.86648 -15.52733 -14.92089 -14.70757 -14.50782 -14.29203 -13.74182 -13.42633 -13.18226 -13.06321 -12.65278 -12.38144 -12.36699 -12.05715 -11.97028 -11.93430 -11.58818 -11.58143 -11.33374 -11.21589 -11.11809 -11.01257 -10.90038 -10.81799 -10.50921 -10.40146 -10.10284 -9.66691 -9.37925 -9.07435 -8.70210 -8.36638 -8.11774 -6.01416 -4.03813 2.63953 2.88485 3.29770 3.37540 3.41178 3.97317 4.41116 4.45111 4.67773 4.73511 4.84520 4.88195 4.94564 5.05285 5.21058 5.27524 5.34628 5.35447 5.45674 5.49442 5.58215 5.66769 5.71558 5.73381 5.75983 5.80880 5.85900 5.90393 5.91876 5.98799 6.08233 6.16055 6.26250 6.30513 6.39562 6.57644 6.69994 6.96861 7.13005 7.20548 7.41280 7.65956 7.79751 7.98490 8.16798 8.40997 9.03635 9.60537 11.09954 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022392 B = 0.003845 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.151739 B = 7280.528366 C = 7849.163797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.109 4.109 3 C -0.144 4.144 4 C 0.111 3.889 5 N -0.602 5.602 6 C 0.072 3.928 7 C 0.038 3.962 8 N -0.521 5.521 9 C 0.042 3.958 10 C -0.105 4.105 11 C 0.023 3.977 12 C -0.518 4.518 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.069 3.931 21 H 0.109 0.891 22 C -0.139 4.139 23 C 0.491 3.509 24 O -0.547 6.547 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.033 0.967 40 H 0.046 0.954 41 H 0.058 0.942 42 H 0.012 0.988 43 H 0.016 0.984 44 H 0.260 0.740 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.956 12.243 -11.615 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.129 4.129 3 C -0.202 4.202 4 C -0.011 4.011 5 N -0.334 5.334 6 C -0.052 4.052 7 C -0.091 4.091 8 N -0.245 5.245 9 C -0.084 4.084 10 C -0.143 4.143 11 C -0.015 4.015 12 C -0.557 4.557 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.043 4.043 21 H 0.127 0.873 22 C -0.197 4.197 23 C 0.278 3.722 24 O -0.424 6.424 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.123 0.877 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.031 0.969 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.445 12.180 -11.254 19.598 hybrid contribution 1.357 0.153 -0.040 1.366 sum -9.088 12.333 -11.293 19.032 Atomic orbital electron populations 1.21779 0.94500 1.01786 1.01219 1.21466 0.96884 0.96200 0.98323 1.21765 1.00865 0.95549 1.02002 1.21604 0.99685 0.80883 0.98961 1.47487 1.19402 1.08602 1.57939 1.22208 0.93703 0.90685 0.98597 1.22565 0.98156 0.94634 0.93727 1.62773 1.10956 1.44998 1.05755 1.22553 0.94335 0.99292 0.92260 1.21689 0.94667 0.97277 1.00691 1.19061 0.93913 0.96637 0.91890 1.21264 1.11987 1.25922 0.96499 0.92617 1.25028 0.97909 0.96487 0.95060 1.69978 1.36960 1.44212 1.02317 0.86557 0.81990 0.81081 0.78494 1.19718 1.21086 1.21014 1.21930 0.95361 0.85991 1.01015 0.87339 1.21813 1.01333 1.02451 0.94071 1.21272 0.80949 0.92489 0.77521 1.90664 1.55458 1.52083 1.44176 0.93637 0.93066 0.92139 0.91413 0.92601 0.92534 0.92458 0.89627 0.90682 0.90320 0.90497 0.87694 0.90432 0.90118 0.94862 0.93498 0.92282 0.96933 0.96560 0.93074 0.91733 0.91123 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 7.90 37.16 0.29 -1.21 16 2 C -0.11 -1.08 3.13 -90.62 -0.28 -1.36 16 3 C -0.14 -1.19 9.19 37.16 0.34 -0.85 16 4 C 0.11 1.29 4.93 -4.04 -0.02 1.27 16 5 N -0.60 -7.67 2.54 -174.58 -0.44 -8.11 16 6 C 0.07 0.84 5.58 -4.31 -0.02 0.82 16 7 C 0.04 0.44 5.47 -3.67 -0.02 0.42 16 8 N -0.52 -7.20 4.98 -228.06 -1.14 -8.33 16 9 C 0.04 0.70 3.61 -3.82 -0.01 0.69 16 10 C -0.11 -2.04 4.62 -26.73 -0.12 -2.16 16 11 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 12 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 16 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 C 0.07 0.90 3.02 -69.08 -0.21 0.69 16 21 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 22 C -0.14 -1.80 8.21 37.16 0.31 -1.50 16 23 C 0.49 7.03 5.01 -11.67 -0.06 6.98 16 24 O -0.55 -9.08 13.67 5.55 0.08 -9.00 16 25 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.65 6.08 -51.93 -0.32 0.33 16 27 H 0.06 0.75 7.90 -51.93 -0.41 0.34 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 1.13 7.21 -51.93 -0.37 0.76 16 33 H 0.07 0.78 8.03 -51.93 -0.42 0.36 16 34 H 0.08 1.06 6.40 -51.93 -0.33 0.72 16 35 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 36 H 0.10 1.23 6.72 -51.93 -0.35 0.88 16 37 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 38 H 0.08 1.39 6.11 -51.93 -0.32 1.07 16 39 H 0.03 0.58 5.92 -51.93 -0.31 0.27 16 40 H 0.05 0.86 6.31 -51.93 -0.33 0.53 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.06 0.93 6.29 -51.93 -0.33 0.60 16 46 H 0.07 0.89 7.80 -51.93 -0.41 0.49 16 47 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 LS Contribution 353.99 15.07 5.33 5.33 Total: -1.00 -30.74 353.99 -9.31 -40.05 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -8.49 Total: -1.35 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -0.36 Total: -8.98 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: -0.84 Total: -42.42 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.08 Total: -9.00 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.74 -9.31 -40.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426218055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.968 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds