Wall clock time and date at job start Tue Mar 31 2020 05:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46936 * 2 1 4 4 C 1.52998 * 109.47134 * 239.99780 * 2 1 3 5 5 C 1.53002 * 109.46926 * 174.99745 * 4 2 1 6 6 C 1.52999 * 109.47628 * 295.00334 * 5 4 2 7 7 C 1.52997 * 109.47317 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47060 * 59.99960 * 7 6 5 9 9 C 1.53002 * 109.47233 * 299.99657 * 8 7 6 10 10 C 1.52997 * 109.46817 * 60.00194 * 9 8 7 11 11 N 1.46508 * 109.47069 * 119.99661 * 2 1 3 12 12 C 1.34772 * 119.99786 * 274.99853 * 11 2 1 13 13 O 1.21581 * 120.00676 * 0.02562 * 12 11 2 14 14 N 1.34781 * 119.99541 * 179.97438 * 12 11 2 15 15 C 1.46501 * 120.00110 * 180.02562 * 14 12 11 16 16 C 1.52989 * 109.47493 * 180.02562 * 15 14 12 17 17 C 1.50698 * 109.47504 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99864 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00358 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99827 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00055 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47046 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46919 * 120.00049 * 21 19 17 24 24 H 1.48497 * 109.47136 * 239.99566 * 21 19 17 25 25 H 1.08996 * 109.47164 * 60.00205 * 1 2 3 26 26 H 1.09004 * 109.46936 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47149 * 300.00023 * 1 2 3 28 28 H 1.09000 * 109.47396 * 55.00104 * 4 2 1 29 29 H 1.08998 * 109.47230 * 294.99853 * 4 2 1 30 30 H 1.09002 * 109.47097 * 55.00131 * 5 4 2 31 31 H 1.08996 * 109.46929 * 59.99225 * 6 5 4 32 32 H 1.09002 * 109.46716 * 300.00030 * 6 5 4 33 33 H 1.09002 * 109.47153 * 299.99641 * 7 6 5 34 34 H 1.09001 * 109.46832 * 179.97438 * 7 6 5 35 35 H 1.08992 * 109.47399 * 59.99823 * 8 7 6 36 36 H 1.09004 * 109.46724 * 180.02562 * 8 7 6 37 37 H 1.08993 * 109.47662 * 180.02562 * 9 8 7 38 38 H 1.09002 * 109.47075 * 300.00932 * 9 8 7 39 39 H 1.09002 * 109.47153 * 60.00231 * 10 9 8 40 40 H 1.09001 * 109.47289 * 180.02562 * 10 9 8 41 41 H 0.97005 * 119.99680 * 95.00198 * 11 2 1 42 42 H 0.96997 * 120.00101 * 0.02562 * 14 12 11 43 43 H 1.09002 * 109.47106 * 300.00609 * 15 14 12 44 44 H 1.09003 * 109.46723 * 59.99928 * 15 14 12 45 45 H 1.09002 * 109.47371 * 300.00359 * 16 15 14 46 46 H 1.09003 * 109.47266 * 60.00174 * 16 15 14 47 47 H 0.96997 * 120.00121 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 6 3.9650 0.8516 -1.5003 7 6 5.4898 0.9595 -1.5654 8 6 6.0096 0.1346 -2.7445 9 6 5.6095 -1.3303 -2.5578 10 6 4.0847 -1.4382 -2.4927 11 7 2.0183 -0.6906 1.1963 12 6 2.1471 -0.0181 2.3571 13 8 1.8575 1.1614 2.4119 14 7 2.5958 -0.6536 3.4578 15 6 2.7353 0.0771 4.7199 16 6 3.2597 -0.8690 5.8017 17 6 3.4037 -0.1172 7.0998 18 1 3.1465 0.9306 7.1484 19 6 3.8639 -0.7669 8.2255 20 7 4.1777 -2.0428 8.1662 21 14 4.0417 0.1649 9.8347 22 1 3.6256 1.5767 9.6377 23 1 3.1816 -0.4645 10.8687 24 1 5.4587 0.1229 10.2770 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6054 -0.2618 -2.1370 29 1 1.7517 -1.7715 -1.2055 30 1 3.9954 -0.9922 -0.3867 31 1 3.5942 1.4394 -0.6606 32 1 3.5344 1.2306 -2.4272 33 1 5.9207 0.5805 -0.6387 34 1 5.7748 2.0031 -1.6988 35 1 5.5787 0.5136 -3.6711 36 1 7.0959 0.2112 -2.7905 37 1 5.9801 -1.9181 -3.3975 38 1 6.0404 -1.7093 -1.6310 39 1 3.6538 -1.0592 -3.4194 40 1 3.7997 -2.4818 -2.3592 41 1 2.2491 -1.6318 1.1527 42 1 2.8265 -1.5947 3.4142 43 1 3.4365 0.9010 4.5871 44 1 1.7645 0.4711 5.0207 45 1 2.5589 -1.6932 5.9346 46 1 4.2306 -1.2626 5.5007 47 1 4.5018 -2.4998 8.9580 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426259494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:46 Heat of formation + Delta-G solvation = -83.215075 kcal Electronic energy + Delta-G solvation = -22565.388317 eV Core-core repulsion = 19359.945726 eV Total energy + Delta-G solvation = -3205.442592 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.91150 -38.79215 -36.08515 -34.59836 -32.89048 -32.24568 -30.94979 -30.48736 -28.98363 -26.30806 -24.69239 -23.01537 -22.12107 -21.19595 -20.61081 -20.34485 -19.78254 -17.96984 -16.40311 -15.95794 -15.75383 -15.01002 -14.78818 -14.45748 -14.42630 -14.29710 -14.11446 -13.58025 -13.46509 -13.17014 -12.93683 -12.50479 -12.36325 -12.32390 -12.16625 -11.89586 -11.48070 -11.27714 -11.14930 -11.07793 -11.06524 -10.99766 -10.60872 -10.59145 -10.29013 -10.18889 -10.01749 -9.84690 -9.51698 -9.21382 -8.91215 -8.45948 -8.18871 -6.07285 -4.09598 3.14596 3.29920 3.37563 3.43319 3.68406 4.36613 4.42009 4.48949 4.56368 4.73575 4.84715 4.93944 5.04455 5.13333 5.25807 5.29925 5.34359 5.35830 5.36739 5.44949 5.48950 5.54480 5.69172 5.71525 5.77732 5.84073 5.95730 5.96842 6.04623 6.05941 6.11062 6.22632 6.28085 6.34192 6.36947 6.44112 6.77011 6.83043 7.07052 7.33217 7.60955 7.66565 7.92495 8.29397 8.52117 8.96112 9.09095 9.55094 11.04462 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019965 B = 0.003093 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.130698 B = 9051.797277 C = 9758.641168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.159 3.841 3 H 0.089 0.911 4 C -0.122 4.122 5 C -0.087 4.087 6 C -0.116 4.116 7 C -0.121 4.121 8 C -0.119 4.119 9 C -0.120 4.120 10 C -0.113 4.113 11 N -0.747 5.747 12 C 0.699 3.301 13 O -0.599 6.599 14 N -0.740 5.740 15 C 0.141 3.859 16 C 0.013 3.987 17 C -0.519 4.519 18 H 0.060 0.940 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.896 3.104 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.283 1.283 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.391 0.609 42 H 0.392 0.608 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.022 0.978 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.013 -0.570 -24.227 24.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.053 3.947 3 H 0.107 0.893 4 C -0.160 4.160 5 C -0.106 4.106 6 C -0.154 4.154 7 C -0.158 4.158 8 C -0.156 4.156 9 C -0.158 4.158 10 C -0.150 4.150 11 N -0.403 5.403 12 C 0.399 3.601 13 O -0.478 6.478 14 N -0.394 5.394 15 C 0.018 3.982 16 C -0.025 4.025 17 C -0.558 4.558 18 H 0.078 0.922 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.724 3.276 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.225 0.775 42 H 0.225 0.775 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.214 0.413 -24.037 24.072 hybrid contribution 0.345 -0.569 0.931 1.144 sum -0.869 -0.156 -23.107 23.124 Atomic orbital electron populations 1.22213 0.95954 1.01795 1.02356 1.20792 0.93311 0.97568 0.82987 0.89283 1.21954 0.95650 1.00946 0.97422 1.21169 0.94707 0.95845 0.98870 1.21631 0.95650 0.96219 1.01852 1.21527 0.95972 0.99712 0.98605 1.21531 1.00206 0.95374 0.98497 1.21531 0.96039 0.96537 1.01681 1.21581 0.95496 0.99631 0.98336 1.45238 1.72597 1.13351 1.09113 1.16081 0.78490 0.85196 0.80379 1.90873 1.57647 1.14574 1.84739 1.45538 1.69997 1.13859 1.09985 1.21554 1.00276 0.95544 0.80814 1.19323 0.96534 0.94628 0.91991 1.21101 1.44013 0.96676 0.93989 0.92185 1.25000 0.95249 0.94920 0.99186 1.69969 1.44719 1.09202 1.29498 0.86462 0.77709 0.80148 0.83287 1.19560 1.20967 1.20954 0.92132 0.92794 0.91875 0.90595 0.91474 0.90762 0.91410 0.92243 0.91921 0.92196 0.92261 0.92346 0.92325 0.91954 0.92169 0.92161 0.77522 0.77521 0.92900 0.92903 0.96023 0.96015 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.48 37.16 0.35 -1.42 16 2 C 0.16 1.76 2.44 -67.93 -0.17 1.60 16 3 H 0.09 1.18 5.78 -51.93 -0.30 0.88 16 4 C -0.12 -0.98 4.22 -26.73 -0.11 -1.10 16 5 C -0.09 -0.75 2.13 -90.62 -0.19 -0.95 16 6 C -0.12 -1.10 4.97 -26.73 -0.13 -1.23 16 7 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 8 C -0.12 -0.95 5.92 -26.73 -0.16 -1.10 16 9 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 10 C -0.11 -0.85 5.20 -26.73 -0.14 -0.98 16 11 N -0.75 -9.43 4.45 -58.67 -0.26 -9.69 16 12 C 0.70 12.30 8.53 -86.92 -0.74 11.55 16 13 O -0.60 -12.95 16.01 5.29 0.08 -12.86 16 14 N -0.74 -13.31 5.56 -65.23 -0.36 -13.67 16 15 C 0.14 3.09 5.61 -4.05 -0.02 3.07 16 16 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 17 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 18 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 21 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.75 7.62 -51.93 -0.40 0.35 16 31 H 0.07 0.77 6.46 -51.93 -0.34 0.44 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.39 3.97 8.62 -40.82 -0.35 3.62 16 42 H 0.39 6.08 8.49 -40.82 -0.35 5.74 16 43 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 LS Contribution 369.75 15.07 5.57 5.57 Total: -1.00 -31.73 369.75 -10.32 -42.04 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -8.88 Total: 3.74 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -2.18 Total: -6.09 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.11 Total: -48.93 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.08 Total: -12.86 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.73 -10.32 -42.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426259494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.171 kcal (2) G-P(sol) polarization free energy of solvation -31.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds