Wall clock time and date at job start Tue Mar 31 2020 05:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47058 * 2 1 4 4 C 1.52998 * 109.47287 * 119.99960 * 2 1 3 5 5 C 1.50699 * 109.47224 * 183.71359 * 4 2 1 6 6 H 1.07999 * 119.99845 * 5.07565 * 5 4 2 7 7 C 1.37882 * 120.00045 * 185.07793 * 5 4 2 8 8 N 1.31513 * 119.99952 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99795 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47503 * 59.99623 * 9 7 5 11 11 H 1.48505 * 109.46967 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47372 * 299.99639 * 9 7 5 13 13 N 1.46901 * 109.46801 * 240.00121 * 2 1 3 14 14 C 1.46955 * 111.00019 * 308.52459 * 13 2 1 15 15 C 1.53056 * 109.38431 * 183.17904 * 14 13 2 16 16 N 1.46960 * 109.35965 * 301.63473 * 15 14 13 17 17 C 1.46898 * 110.99303 * 183.16607 * 16 15 14 18 18 C 1.53004 * 109.47368 * 66.17927 * 17 16 15 19 19 H 1.08998 * 110.80031 * 308.62656 * 18 17 16 20 20 C 1.54810 * 110.90578 * 184.99955 * 18 17 16 21 21 C 1.54105 * 104.18217 * 220.91842 * 20 18 17 22 22 O 1.43740 * 107.29709 * 357.97239 * 21 20 18 23 23 C 1.44376 * 106.97478 * 26.51258 * 22 21 20 24 24 C 1.46956 * 110.89787 * 59.28934 * 16 15 14 25 25 C 1.46955 * 111.00207 * 72.32680 * 13 2 1 26 26 H 1.08993 * 109.47162 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46671 * 300.00116 * 1 2 3 28 28 H 1.08993 * 109.46885 * 59.99594 * 1 2 3 29 29 H 1.08998 * 109.47238 * 303.71424 * 4 2 1 30 30 H 1.09004 * 109.46857 * 63.71488 * 4 2 1 31 31 H 0.96994 * 120.00345 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.49145 * 303.15887 * 14 13 2 33 33 H 1.09008 * 109.48856 * 63.20090 * 14 13 2 34 34 H 1.08997 * 109.48210 * 61.57824 * 15 14 13 35 35 H 1.08996 * 109.48675 * 181.64746 * 15 14 13 36 36 H 1.09002 * 109.47006 * 186.17695 * 17 16 15 37 37 H 1.09005 * 109.47652 * 306.17631 * 17 16 15 38 38 H 1.08991 * 110.49107 * 339.59547 * 20 18 17 39 39 H 1.08999 * 110.48944 * 102.11368 * 20 18 17 40 40 H 1.09002 * 109.87752 * 117.39774 * 21 20 18 41 41 H 1.09006 * 109.87820 * 238.39561 * 21 20 18 42 42 H 1.09003 * 110.61938 * 201.44044 * 23 22 21 43 43 H 1.09001 * 110.62145 * 78.43719 * 23 22 21 44 44 H 1.09000 * 109.48736 * 180.72008 * 24 16 15 45 45 H 1.09001 * 109.50718 * 60.66779 * 24 16 15 46 46 H 1.08999 * 109.49078 * 296.77777 * 25 13 2 47 47 H 1.09000 * 109.48541 * 56.82567 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5443 -0.6420 1.2961 6 1 4.0775 -0.0599 0.5591 7 6 4.2396 -1.3128 2.2798 8 7 3.5902 -2.0213 3.1775 9 14 6.1041 -1.2140 2.3382 10 1 6.5198 0.2017 2.5067 11 1 6.6067 -2.0165 3.4822 12 1 6.6681 -1.7481 1.0726 13 7 2.0196 -0.6925 -1.1995 14 6 1.3895 -2.0127 -1.3395 15 6 1.9827 -2.7326 -2.5530 16 7 1.7659 -1.9178 -3.7567 17 6 2.2555 -2.6104 -4.9561 18 6 1.4065 -3.8582 -5.2069 19 1 1.3390 -4.4680 -4.3059 20 6 1.9706 -4.6816 -6.3903 21 6 0.7186 -5.1318 -7.1679 22 8 -0.4280 -4.6458 -6.4500 23 6 -0.0037 -3.4734 -5.7221 24 6 2.3962 -0.5977 -3.6166 25 6 1.8025 0.1219 -2.4033 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.6235 -0.2473 2.1380 30 1 1.7321 -1.7663 1.2165 31 1 4.0793 -2.4928 3.8697 32 1 1.5749 -2.6013 -0.4410 33 1 0.3153 -1.8900 -1.4786 34 1 3.0520 -2.8798 -2.4015 35 1 1.4957 -3.7000 -2.6757 36 1 2.1839 -1.9435 -5.8154 37 1 3.2954 -2.9021 -4.8083 38 1 2.6070 -4.0591 -7.0192 39 1 2.5257 -5.5452 -6.0240 40 1 0.7340 -4.7084 -8.1722 41 1 0.6892 -6.2199 -7.2250 42 1 -0.6765 -3.2754 -4.8876 43 1 0.0523 -2.6096 -6.3846 44 1 2.2108 -0.0091 -4.5151 45 1 3.4703 -0.7201 -3.4773 46 1 0.7332 0.2688 -2.5550 47 1 2.2888 1.0896 -2.2802 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429691275.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:40 Heat of formation + Delta-G solvation = -39.839213 kcal Electronic energy + Delta-G solvation = -23473.501977 eV Core-core repulsion = 20269.940304 eV Total energy + Delta-G solvation = -3203.561673 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.85398 -38.88473 -36.30055 -33.34501 -32.39153 -30.77838 -30.46940 -29.30452 -27.29164 -26.36886 -23.94384 -23.46185 -22.96481 -22.35209 -20.40489 -19.99092 -18.54718 -16.91440 -16.17048 -15.99979 -15.71401 -15.36513 -14.69897 -14.65696 -14.51598 -14.24647 -14.03690 -13.80894 -13.42616 -12.94384 -12.89778 -12.11637 -12.10937 -12.01301 -11.73097 -11.68292 -11.46876 -11.28703 -11.11075 -11.05615 -10.95708 -10.77417 -10.57475 -10.45618 -10.38736 -10.17634 -9.87246 -9.80657 -9.15305 -8.97001 -8.25104 -8.22711 -7.41835 -5.87906 -3.85376 3.40017 3.43960 3.47272 3.74700 3.96494 4.44694 4.54229 4.56899 4.59152 4.77035 4.86649 5.07342 5.21685 5.29223 5.35093 5.44287 5.49023 5.49713 5.51388 5.59771 5.64628 5.72363 5.73175 5.80224 5.83095 5.83834 5.89481 5.97821 6.00669 6.06110 6.15248 6.25240 6.39415 6.48300 6.60961 6.71690 6.72306 7.02012 7.13025 7.18722 7.56131 7.69950 7.93154 8.05002 8.13547 8.59223 9.19493 9.75711 11.24095 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020850 B = 0.003943 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.605425 B = 7098.721129 C = 7633.929248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.087 3.913 3 H 0.067 0.933 4 C 0.031 3.969 5 C -0.488 4.488 6 H 0.057 0.943 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.510 5.510 14 C 0.059 3.941 15 C 0.056 3.944 16 N -0.539 5.539 17 C 0.066 3.934 18 C -0.118 4.118 19 H 0.089 0.911 20 C -0.153 4.153 21 C 0.048 3.952 22 O -0.384 6.384 23 C 0.063 3.937 24 C 0.061 3.939 25 C 0.055 3.945 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.039 0.961 29 H 0.014 0.986 30 H 0.022 0.978 31 H 0.258 0.742 32 H 0.089 0.911 33 H 0.034 0.966 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.042 0.958 46 H 0.033 0.967 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.036 -2.173 -18.898 19.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.021 4.021 3 H 0.085 0.915 4 C -0.006 4.006 5 C -0.526 4.526 6 H 0.076 0.924 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.234 5.234 14 C -0.069 4.069 15 C -0.072 4.072 16 N -0.264 5.264 17 C -0.062 4.062 18 C -0.137 4.137 19 H 0.108 0.892 20 C -0.191 4.191 21 C -0.029 4.029 22 O -0.303 6.303 23 C -0.013 4.013 24 C -0.067 4.067 25 C -0.074 4.074 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.115 0.885 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.060 0.940 46 H 0.051 0.949 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.199 -2.363 -18.740 19.591 hybrid contribution 1.376 0.071 0.093 1.381 sum -3.823 -2.292 -18.647 19.173 Atomic orbital electron populations 1.22502 0.99652 1.01411 1.00560 1.21895 0.90135 0.98121 0.91915 0.91490 1.19174 0.96243 0.95511 0.89686 1.21100 0.91634 1.28845 1.11071 0.92448 1.24985 0.97907 0.95898 0.96027 1.69947 1.35206 1.32900 1.16458 0.86711 0.86538 0.77810 0.77166 1.20537 1.21651 1.20511 1.62279 1.57566 1.02254 1.01332 1.22133 0.95727 0.91575 0.97463 1.22250 0.99886 0.95950 0.89105 1.62195 1.58039 1.03559 1.02609 1.22023 0.96202 0.94396 0.93611 1.22769 0.95700 0.96523 0.98732 0.89241 1.22973 0.98281 1.00591 0.97254 1.23098 0.85053 0.99614 0.95124 1.88866 1.32779 1.44300 1.64376 1.23523 0.94897 0.87644 0.95266 1.22121 0.97113 0.89650 0.97847 1.22118 0.98445 0.96568 0.90245 0.92733 0.92690 0.94145 0.96738 0.95997 0.93287 0.89276 0.94781 0.93795 0.90895 0.90893 0.94453 0.90650 0.90463 0.92685 0.90140 0.88488 0.92301 0.91212 0.94007 0.94876 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 8.39 37.16 0.31 -2.84 16 2 C 0.09 1.76 2.26 -67.71 -0.15 1.61 16 3 H 0.07 1.38 7.98 -51.93 -0.41 0.96 16 4 C 0.03 0.78 4.40 -27.88 -0.12 0.66 16 5 C -0.49 -13.61 8.80 -34.44 -0.30 -13.91 16 6 H 0.06 1.60 7.75 -52.49 -0.41 1.19 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 9 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.51 -9.59 4.32 -226.48 -0.98 -10.57 16 14 C 0.06 1.04 4.70 -3.77 -0.02 1.02 16 15 C 0.06 0.84 5.43 -3.76 -0.02 0.82 16 16 N -0.54 -7.07 4.65 -234.46 -1.09 -8.16 16 17 C 0.07 0.71 4.30 -3.82 -0.02 0.69 16 18 C -0.12 -1.20 3.08 -88.61 -0.27 -1.47 16 19 H 0.09 1.00 6.25 -51.93 -0.32 0.68 16 20 C -0.15 -1.27 6.60 -25.20 -0.17 -1.44 16 21 C 0.05 0.43 7.70 37.73 0.29 0.72 16 22 O -0.38 -4.60 11.52 -35.23 -0.41 -5.00 16 23 C 0.06 0.68 7.11 38.21 0.27 0.95 16 24 C 0.06 0.82 5.61 -3.77 -0.02 0.80 16 25 C 0.06 0.85 5.36 -3.77 -0.02 0.83 16 26 H 0.05 0.94 6.39 -51.93 -0.33 0.61 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.04 0.63 6.85 -51.93 -0.36 0.27 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.02 0.59 6.42 -51.93 -0.33 0.25 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.09 1.80 6.37 -51.93 -0.33 1.47 16 33 H 0.03 0.58 6.40 -51.92 -0.33 0.25 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.99 6.22 -51.93 -0.32 0.67 16 36 H 0.07 0.70 7.86 -51.93 -0.41 0.30 16 37 H 0.04 0.42 8.12 -51.93 -0.42 0.00 16 38 H 0.07 0.55 7.86 -51.93 -0.41 0.14 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 0.59 7.93 -51.93 -0.41 0.18 16 44 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.03 0.51 6.85 -51.93 -0.36 0.15 16 47 H 0.07 1.09 8.05 -51.93 -0.42 0.67 16 LS Contribution 352.64 15.07 5.31 5.31 Total: -1.00 -30.11 352.64 -10.29 -40.40 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -8.51 Total: -2.37 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -0.34 Total: -10.19 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -1.33 Total: -45.18 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.41 Total: -5.00 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.11 -10.29 -40.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429691275.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.560 kcal (2) G-P(sol) polarization free energy of solvation -30.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds