Wall clock time and date at job start Tue Mar 31 2020 05:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47392 * 2 1 4 4 C 1.53008 * 109.46534 * 240.00193 * 2 1 3 5 5 C 1.50703 * 109.46694 * 175.00320 * 4 2 1 6 6 H 1.07995 * 120.00281 * 359.72203 * 5 4 2 7 7 C 1.37875 * 119.99710 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00201 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00055 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47259 * 89.99544 * 9 7 5 11 11 H 1.48500 * 109.47427 * 209.99951 * 9 7 5 12 12 H 1.48507 * 109.47203 * 329.99810 * 9 7 5 13 13 N 1.46900 * 109.47021 * 120.00494 * 2 1 3 14 14 C 1.46956 * 110.99924 * 58.79547 * 13 2 1 15 15 C 1.53057 * 109.36192 * 176.80939 * 14 13 2 16 16 N 1.46955 * 109.36411 * 58.40174 * 15 14 13 17 17 C 1.46892 * 111.00200 * 176.81053 * 16 15 14 18 18 C 1.53000 * 109.47208 * 189.92002 * 17 16 15 19 19 H 1.08998 * 110.80866 * 307.06862 * 18 17 16 20 20 C 1.54812 * 110.90790 * 183.44392 * 18 17 16 21 21 C 1.54100 * 104.18998 * 220.91943 * 20 18 17 22 22 O 1.43747 * 107.29426 * 357.97196 * 21 20 18 23 23 C 1.44385 * 106.96962 * 26.51387 * 22 21 20 24 24 C 1.46960 * 110.88169 * 300.68237 * 16 15 14 25 25 C 1.46955 * 111.00043 * 294.99480 * 13 2 1 26 26 H 1.08995 * 109.47392 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46780 * 300.00156 * 1 2 3 28 28 H 1.09001 * 109.47252 * 59.99399 * 1 2 3 29 29 H 1.08994 * 109.47356 * 55.00473 * 4 2 1 30 30 H 1.08997 * 109.46813 * 295.00020 * 4 2 1 31 31 H 0.96998 * 120.00272 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.49226 * 296.77349 * 14 13 2 33 33 H 1.09002 * 109.49217 * 56.84580 * 14 13 2 34 34 H 1.08998 * 109.49288 * 298.43458 * 15 14 13 35 35 H 1.09002 * 109.48686 * 178.36583 * 15 14 13 36 36 H 1.09002 * 109.47139 * 309.91534 * 17 16 15 37 37 H 1.08997 * 109.47406 * 69.91851 * 17 16 15 38 38 H 1.09000 * 110.48865 * 339.59753 * 20 18 17 39 39 H 1.09000 * 110.49059 * 102.11122 * 20 18 17 40 40 H 1.09008 * 109.88035 * 117.39548 * 21 20 18 41 41 H 1.08999 * 109.88284 * 238.39735 * 21 20 18 42 42 H 1.09001 * 110.60913 * 201.43907 * 23 22 21 43 43 H 1.08999 * 110.62290 * 78.44586 * 23 22 21 44 44 H 1.09007 * 109.48354 * 299.35158 * 24 16 15 45 45 H 1.09000 * 109.49072 * 179.29305 * 24 16 15 46 46 H 1.09002 * 109.48760 * 303.15486 * 25 13 2 47 47 H 1.09000 * 109.48854 * 63.19831 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2494 5 6 3.5418 -0.6150 -1.3128 6 1 4.0785 -0.0822 -0.5419 7 6 4.2301 -1.1927 -2.3585 8 7 3.5761 -1.8369 -3.3002 9 14 6.0919 -1.0617 -2.4369 10 1 6.6997 -2.2150 -1.7258 11 1 6.5294 -1.0687 -3.8560 12 1 6.5268 0.2029 -1.7911 13 7 2.0196 -0.6926 1.1994 14 6 1.5250 -2.0756 1.2477 15 6 2.1200 -2.7850 2.4664 16 7 1.7490 -2.0531 3.6855 17 6 2.2387 -2.7457 4.8849 18 6 1.6303 -2.0994 6.1311 19 1 1.8013 -1.0229 6.1317 20 6 2.1911 -2.7485 7.4198 21 6 0.9650 -2.8715 8.3452 22 8 -0.1541 -2.2959 7.6505 23 6 0.1176 -2.4200 6.2379 24 6 2.2436 -0.6701 3.6372 25 6 1.6486 0.0393 2.4185 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.6053 -0.2617 -2.1370 30 1 1.7514 -1.7715 -1.2057 31 1 4.0604 -2.2437 -4.0357 32 1 0.4378 -2.0705 1.3249 33 1 1.8231 -2.6004 0.3400 34 1 3.2059 -2.8142 2.3761 35 1 1.7318 -3.8021 2.5205 36 1 1.9490 -3.7956 4.8419 37 1 3.3251 -2.6701 4.9300 38 1 2.6050 -3.7331 7.2021 39 1 2.9492 -2.1083 7.8708 40 1 0.7672 -3.9216 8.5609 41 1 1.1458 -2.3303 9.2739 42 1 -0.4688 -1.6981 5.6696 43 1 -0.0848 -3.4349 5.8957 44 1 3.3309 -0.6752 3.5601 45 1 1.9456 -0.1454 4.5449 46 1 2.0368 1.0564 2.3644 47 1 0.5628 0.0688 2.5087 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429691276.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:42 Heat of formation + Delta-G solvation = -39.642443 kcal Electronic energy + Delta-G solvation = -23427.540303 eV Core-core repulsion = 20223.987162 eV Total energy + Delta-G solvation = -3203.553140 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.87474 -38.90056 -36.31992 -33.32357 -32.42524 -30.82132 -30.48742 -29.24009 -27.32602 -26.39290 -23.98882 -23.52376 -22.79693 -22.37865 -20.60198 -19.90664 -18.51105 -16.90212 -16.17204 -16.09677 -15.61826 -15.41675 -14.79107 -14.60565 -14.52610 -14.34357 -13.95566 -13.84597 -13.42395 -13.01998 -12.84993 -12.19440 -12.06607 -11.93243 -11.74142 -11.67927 -11.62475 -11.28523 -11.12506 -11.05645 -10.92306 -10.78558 -10.58708 -10.53889 -10.33954 -10.12576 -9.86179 -9.83808 -9.13547 -8.97807 -8.26711 -8.23100 -7.43693 -5.89855 -3.87689 3.37653 3.43783 3.47911 3.73053 3.95294 4.42520 4.52575 4.54681 4.58966 4.74988 4.84634 5.05586 5.19619 5.28153 5.34985 5.44463 5.46591 5.48532 5.50039 5.58780 5.64590 5.69256 5.73738 5.80909 5.82184 5.83981 5.88059 5.97562 6.00891 6.05562 6.14645 6.25186 6.40552 6.48896 6.64031 6.69767 6.73860 6.99440 7.12913 7.19087 7.55745 7.69999 7.92579 8.03432 8.12340 8.57505 9.18501 9.74077 11.22053 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025630 B = 0.003716 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.209846 B = 7533.704578 C = 8118.164159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.069 0.931 4 C 0.029 3.971 5 C -0.490 4.490 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.276 1.276 13 N -0.512 5.512 14 C 0.058 3.942 15 C 0.059 3.941 16 N -0.539 5.539 17 C 0.065 3.935 18 C -0.117 4.117 19 H 0.087 0.913 20 C -0.153 4.153 21 C 0.048 3.952 22 O -0.385 6.385 23 C 0.063 3.937 24 C 0.057 3.943 25 C 0.054 3.946 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.054 0.946 29 H 0.018 0.982 30 H 0.020 0.980 31 H 0.257 0.743 32 H 0.033 0.967 33 H 0.094 0.906 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.060 0.940 44 H 0.041 0.959 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.902 -1.793 19.506 20.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.087 0.913 4 C -0.008 4.008 5 C -0.529 4.529 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.718 3.282 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.201 1.201 13 N -0.236 5.236 14 C -0.070 4.070 15 C -0.068 4.068 16 N -0.264 5.264 17 C -0.063 4.063 18 C -0.136 4.136 19 H 0.105 0.895 20 C -0.191 4.191 21 C -0.029 4.029 22 O -0.304 6.304 23 C -0.013 4.013 24 C -0.071 4.071 25 C -0.075 4.075 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.112 0.888 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.115 0.885 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.043 -1.792 19.427 20.151 hybrid contribution 1.330 -0.128 -0.233 1.356 sum -3.714 -1.920 19.194 19.644 Atomic orbital electron populations 1.22504 0.99724 1.01330 1.00639 1.21894 0.90100 0.98353 0.91741 0.91320 1.19226 0.96319 0.95359 0.89932 1.21172 0.91833 1.32844 1.07004 0.92220 1.25003 0.97953 0.95957 0.95961 1.69960 1.35176 1.36976 1.12344 0.86641 0.86502 0.78299 0.76768 1.20991 1.21606 1.20057 1.62282 1.58887 1.01412 1.01017 1.22157 0.96674 0.90435 0.97741 1.22188 0.99157 0.96618 0.88877 1.62195 1.59637 1.02597 1.01973 1.22030 0.97157 0.97993 0.89121 1.22757 0.95992 1.01210 0.93665 0.89477 1.22976 0.98509 1.01922 0.95708 1.23098 0.85622 0.98225 0.95952 1.88866 1.41509 1.81582 1.18424 1.23521 0.94779 1.01518 0.81507 1.22192 0.97988 0.88925 0.97951 1.22127 0.97943 0.97265 0.90175 0.92904 0.94013 0.92672 0.96364 0.96212 0.93318 0.94900 0.88766 0.93812 0.91047 0.90733 0.94484 0.90568 0.90542 0.92630 0.90179 0.88527 0.92158 0.94102 0.91049 0.91088 0.94690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 8.49 37.16 0.32 -2.85 16 2 C 0.09 1.76 2.30 -67.71 -0.16 1.60 16 3 H 0.07 1.42 8.11 -51.93 -0.42 1.00 16 4 C 0.03 0.72 4.27 -27.88 -0.12 0.60 16 5 C -0.49 -13.60 8.84 -34.44 -0.30 -13.90 16 6 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 9 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.51 -9.57 4.41 -226.49 -1.00 -10.57 16 14 C 0.06 1.02 4.82 -3.76 -0.02 1.01 16 15 C 0.06 0.89 5.61 -3.76 -0.02 0.87 16 16 N -0.54 -7.05 4.62 -234.47 -1.08 -8.13 16 17 C 0.07 0.70 4.29 -3.83 -0.02 0.68 16 18 C -0.12 -1.13 3.06 -88.61 -0.27 -1.40 16 19 H 0.09 0.89 6.30 -51.93 -0.33 0.56 16 20 C -0.15 -1.21 6.60 -25.20 -0.17 -1.38 16 21 C 0.05 0.41 7.70 37.73 0.29 0.70 16 22 O -0.38 -4.47 11.52 -35.23 -0.41 -4.88 16 23 C 0.06 0.66 7.09 38.21 0.27 0.93 16 24 C 0.06 0.78 5.43 -3.77 -0.02 0.76 16 25 C 0.05 0.83 5.25 -3.77 -0.02 0.81 16 26 H 0.05 0.92 6.46 -51.93 -0.34 0.58 16 27 H 0.04 0.65 6.59 -51.93 -0.34 0.31 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.02 0.52 6.11 -51.93 -0.32 0.20 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.03 0.57 6.47 -51.93 -0.34 0.23 16 33 H 0.09 1.93 6.07 -51.93 -0.32 1.61 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.95 8.07 -51.93 -0.42 0.53 16 36 H 0.07 0.75 7.90 -51.93 -0.41 0.34 16 37 H 0.04 0.41 8.12 -51.93 -0.42 -0.01 16 38 H 0.08 0.55 7.86 -51.93 -0.41 0.14 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 0.61 7.95 -51.93 -0.41 0.20 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.83 6.24 -51.93 -0.32 0.51 16 46 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 47 H 0.03 0.54 6.60 -51.93 -0.34 0.19 16 LS Contribution 352.06 15.07 5.31 5.31 Total: -1.00 -29.87 352.06 -10.28 -40.15 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -8.48 Total: -2.29 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -0.33 Total: -10.23 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: -1.35 Total: -45.00 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.41 Total: -4.88 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.87 -10.28 -40.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429691276.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.509 kcal (2) G-P(sol) polarization free energy of solvation -29.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds