Wall clock time and date at job start Tue Mar 31 2020 05:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47454 * 2 1 4 4 C 1.53005 * 109.47214 * 119.99840 * 2 1 3 5 5 C 1.50698 * 109.47192 * 183.71506 * 4 2 1 6 6 H 1.08006 * 120.00043 * 5.07703 * 5 4 2 7 7 C 1.37875 * 120.00492 * 185.07431 * 5 4 2 8 8 N 1.31515 * 119.99402 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00364 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47030 * 90.00233 * 9 7 5 11 11 H 1.48500 * 109.47031 * 209.99938 * 9 7 5 12 12 H 1.48500 * 109.47065 * 330.00172 * 9 7 5 13 13 N 1.46906 * 109.47063 * 239.99647 * 2 1 3 14 14 C 1.46951 * 110.99934 * 308.52947 * 13 2 1 15 15 C 1.53055 * 109.36281 * 183.19060 * 14 13 2 16 16 N 1.46962 * 109.35713 * 301.59542 * 15 14 13 17 17 C 1.46906 * 110.99403 * 183.19027 * 16 15 14 18 18 C 1.52999 * 109.47033 * 170.00133 * 17 16 15 19 19 H 1.09005 * 110.75546 * 57.01656 * 18 17 16 20 20 C 1.55303 * 110.84964 * 180.71161 * 18 17 16 21 21 C 1.54948 * 100.94405 * 152.32259 * 20 18 17 22 22 O 1.43648 * 105.13577 * 323.55793 * 21 20 18 23 23 C 1.43237 * 109.96894 * 24.42887 * 22 21 20 24 24 C 1.46951 * 110.88227 * 59.32625 * 16 15 14 25 25 C 1.46960 * 110.99595 * 72.33025 * 13 2 1 26 26 H 1.09003 * 109.46775 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47262 * 299.99875 * 1 2 3 28 28 H 1.09000 * 109.47378 * 60.00215 * 1 2 3 29 29 H 1.08993 * 109.47075 * 303.71443 * 4 2 1 30 30 H 1.08995 * 109.47011 * 63.71841 * 4 2 1 31 31 H 0.97000 * 119.99619 * 180.02562 * 8 7 5 32 32 H 1.08992 * 109.49051 * 63.22336 * 14 13 2 33 33 H 1.09001 * 109.50915 * 303.16049 * 14 13 2 34 34 H 1.09001 * 109.49066 * 181.63498 * 15 14 13 35 35 H 1.08990 * 109.50948 * 61.56965 * 15 14 13 36 36 H 1.08999 * 109.46964 * 289.99699 * 17 16 15 37 37 H 1.09001 * 109.47652 * 50.00040 * 17 16 15 38 38 H 1.08997 * 111.12804 * 270.24086 * 20 18 17 39 39 H 1.09001 * 111.12409 * 34.40991 * 20 18 17 40 40 H 1.09001 * 110.31517 * 204.64496 * 21 20 18 41 41 H 1.09005 * 110.39110 * 82.51352 * 21 20 18 42 42 H 1.09009 * 109.82971 * 238.77195 * 23 22 21 43 43 H 1.08998 * 109.91024 * 117.84870 * 23 22 21 44 44 H 1.09000 * 109.49025 * 60.64417 * 24 16 15 45 45 H 1.09003 * 109.49167 * 180.71002 * 24 16 15 46 46 H 1.09003 * 109.48646 * 296.77285 * 25 13 2 47 47 H 1.09000 * 109.49281 * 56.84603 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5442 -0.6420 1.2962 6 1 4.0775 -0.0598 0.5592 7 6 4.2396 -1.3126 2.2799 8 7 3.5902 -2.0219 3.1770 9 14 6.1042 -1.2149 2.3375 10 1 6.5137 -0.0629 3.1804 11 1 6.6479 -2.4698 2.9164 12 1 6.6332 -1.0345 0.9617 13 7 2.0197 -0.6926 -1.1994 14 6 1.3895 -2.0127 -1.3394 15 6 1.9832 -2.7324 -2.5527 16 7 1.7660 -1.9179 -3.7566 17 6 2.2557 -2.6105 -4.9560 18 6 1.7940 -1.8563 -6.2046 19 1 2.1361 -0.8216 -6.1794 20 6 2.2801 -2.5723 -7.4942 21 6 1.1826 -2.1433 -8.5003 22 8 -0.0355 -2.1198 -7.7393 23 6 0.2587 -1.9239 -6.3512 24 6 2.3962 -0.5978 -3.6166 25 6 1.8025 0.1219 -2.4033 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6234 -0.2473 2.1380 30 1 1.7321 -1.7663 1.2166 31 1 4.0794 -2.4934 3.8693 32 1 0.3155 -1.8901 -1.4790 33 1 1.5746 -2.6016 -0.4410 34 1 1.4966 -3.7000 -2.6757 35 1 3.0525 -2.8795 -2.4014 36 1 3.3449 -2.6467 -4.9354 37 1 1.8587 -3.6255 -4.9772 38 1 3.2596 -2.2061 -7.8015 39 1 2.2908 -3.6543 -7.3624 40 1 1.1082 -2.8681 -9.3110 41 1 1.3991 -1.1520 -8.8986 42 1 -0.1319 -2.7587 -5.7690 43 1 -0.1872 -0.9915 -6.0052 44 1 3.4702 -0.7205 -3.4771 45 1 2.2107 -0.0092 -4.5151 46 1 0.7331 0.2687 -2.5550 47 1 2.2891 1.0895 -2.2804 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429691277.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:44 Heat of formation + Delta-G solvation = -40.159298 kcal Electronic energy + Delta-G solvation = -23449.216279 eV Core-core repulsion = 20245.640726 eV Total energy + Delta-G solvation = -3203.575553 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.88939 -38.89177 -36.31416 -33.33493 -32.41574 -30.85960 -30.47957 -29.28324 -27.30376 -26.42109 -23.97352 -23.46079 -22.85408 -22.33553 -20.65333 -19.84669 -18.55370 -16.98847 -16.19468 -16.10383 -15.91402 -15.06881 -14.78249 -14.55908 -14.52760 -14.26228 -13.97861 -13.87035 -13.35215 -13.02744 -12.89265 -12.30644 -12.05712 -11.95038 -11.76187 -11.66350 -11.59512 -11.30648 -11.14098 -11.05369 -10.97295 -10.81600 -10.58393 -10.53798 -10.37564 -10.13882 -9.89533 -9.65551 -9.15562 -8.96117 -8.25952 -8.23756 -7.42250 -5.88526 -3.85880 3.37852 3.44122 3.48754 3.71480 3.87557 4.34445 4.53637 4.55401 4.58143 4.73368 4.96216 5.01403 5.17620 5.24387 5.34512 5.43196 5.45097 5.48586 5.50145 5.62425 5.64920 5.67233 5.73135 5.79882 5.82642 5.85264 5.88838 5.99291 6.00863 6.05929 6.12978 6.24481 6.38915 6.47420 6.60537 6.71306 6.84384 7.01571 7.12137 7.18050 7.55705 7.69524 7.92800 8.04496 8.13108 8.58757 9.19273 9.75309 11.23507 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024972 B = 0.003769 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.003764 B = 7427.821094 C = 8026.006211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.087 3.913 3 H 0.067 0.933 4 C 0.031 3.969 5 C -0.487 4.487 6 H 0.058 0.942 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.510 5.510 14 C 0.059 3.941 15 C 0.059 3.941 16 N -0.539 5.539 17 C 0.066 3.934 18 C -0.118 4.118 19 H 0.085 0.915 20 C -0.152 4.152 21 C 0.052 3.948 22 O -0.391 6.391 23 C 0.067 3.933 24 C 0.058 3.942 25 C 0.055 3.945 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.039 0.961 29 H 0.014 0.986 30 H 0.022 0.978 31 H 0.257 0.743 32 H 0.034 0.966 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.042 0.958 45 H 0.070 0.930 46 H 0.033 0.967 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.493 -0.283 -19.684 20.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.021 4.021 3 H 0.085 0.915 4 C -0.007 4.007 5 C -0.525 4.525 6 H 0.076 0.924 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.234 5.234 14 C -0.069 4.069 15 C -0.069 4.069 16 N -0.264 5.264 17 C -0.063 4.063 18 C -0.137 4.137 19 H 0.103 0.897 20 C -0.191 4.191 21 C -0.024 4.024 22 O -0.311 6.311 23 C -0.009 4.009 24 C -0.070 4.070 25 C -0.074 4.074 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.088 0.912 46 H 0.051 0.949 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.656 -0.417 -19.599 20.149 hybrid contribution 1.350 0.047 0.255 1.375 sum -3.305 -0.370 -19.345 19.628 Atomic orbital electron populations 1.22503 0.99646 1.01414 1.00562 1.21894 0.90137 0.98121 0.91914 0.91499 1.19180 0.96268 0.95522 0.89687 1.21135 0.91629 1.28738 1.11026 0.92400 1.24991 0.97930 0.95901 0.96062 1.69963 1.35111 1.32938 1.16503 0.86652 0.86558 0.77108 0.77978 1.21021 1.21580 1.20043 1.62283 1.57552 1.02254 1.01324 1.22129 0.95741 0.91581 0.97432 1.22185 0.99940 0.95719 0.89024 1.62209 1.58003 1.03664 1.02518 1.22028 0.97757 0.97440 0.89044 1.22752 0.96002 1.00554 0.94351 0.89656 1.23300 0.99478 1.01531 0.94753 1.23316 0.83933 1.00597 0.94584 1.88392 1.29559 1.94407 1.18753 1.23068 0.94283 1.01870 0.81692 1.22183 0.97059 0.90044 0.97751 1.22120 0.98428 0.96572 0.90270 0.92728 0.92687 0.94149 0.96734 0.95976 0.93352 0.94758 0.89225 0.91026 0.93750 0.94413 0.90622 0.89994 0.90214 0.90016 0.92408 0.90795 0.91358 0.94007 0.91167 0.94892 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 8.39 37.16 0.31 -2.84 16 2 C 0.09 1.76 2.26 -67.71 -0.15 1.61 16 3 H 0.07 1.37 7.98 -51.93 -0.41 0.96 16 4 C 0.03 0.77 4.40 -27.88 -0.12 0.65 16 5 C -0.49 -13.55 8.80 -34.44 -0.30 -13.85 16 6 H 0.06 1.62 7.75 -52.48 -0.41 1.21 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 9 Si 0.89 22.01 29.54 -169.99 -5.02 16.98 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.51 -9.59 4.32 -226.48 -0.98 -10.57 16 14 C 0.06 1.04 4.70 -3.77 -0.02 1.02 16 15 C 0.06 0.89 5.61 -3.76 -0.02 0.86 16 16 N -0.54 -7.08 4.52 -234.46 -1.06 -8.14 16 17 C 0.07 0.70 4.28 -3.82 -0.02 0.69 16 18 C -0.12 -1.12 2.88 -88.68 -0.26 -1.37 16 19 H 0.09 0.82 6.46 -51.93 -0.34 0.49 16 20 C -0.15 -1.20 6.62 -24.48 -0.16 -1.36 16 21 C 0.05 0.45 7.78 38.19 0.30 0.74 16 22 O -0.39 -4.60 11.36 -35.23 -0.40 -5.00 16 23 C 0.07 0.73 7.23 37.88 0.27 1.00 16 24 C 0.06 0.78 5.42 -3.77 -0.02 0.76 16 25 C 0.05 0.85 5.36 -3.76 -0.02 0.83 16 26 H 0.05 0.94 6.39 -51.93 -0.33 0.61 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.04 0.63 6.85 -51.93 -0.36 0.27 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.02 0.59 6.42 -51.93 -0.33 0.26 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.03 0.58 6.41 -51.93 -0.33 0.25 16 33 H 0.09 1.80 6.37 -51.93 -0.33 1.47 16 34 H 0.07 0.95 8.07 -51.93 -0.42 0.53 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.04 0.42 8.12 -51.93 -0.42 0.00 16 37 H 0.08 0.78 7.96 -51.93 -0.41 0.37 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.61 8.04 -51.93 -0.42 0.19 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.84 7.76 -51.92 -0.40 0.43 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.82 6.31 -51.93 -0.33 0.49 16 46 H 0.03 0.51 6.85 -51.93 -0.36 0.15 16 47 H 0.07 1.09 8.05 -51.93 -0.42 0.67 16 LS Contribution 352.74 15.07 5.32 5.32 Total: -1.00 -30.12 352.74 -10.25 -40.37 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -8.53 Total: -2.65 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -0.31 Total: -9.91 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: -1.30 Total: -45.11 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.40 Total: -5.00 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.12 -10.25 -40.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429691277.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.211 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds