Wall clock time and date at job start Tue Mar 31 2020 05:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47114 * 2 1 4 4 C 1.52999 * 109.47503 * 239.99839 * 2 1 3 5 5 C 1.50693 * 109.47037 * 62.81116 * 4 2 1 6 6 H 1.07997 * 120.00285 * 5.58603 * 5 4 2 7 7 C 1.37880 * 119.99711 * 185.58252 * 5 4 2 8 8 N 1.31510 * 120.00437 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99874 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46938 * 90.00217 * 9 7 5 11 11 H 1.48502 * 109.47274 * 210.00274 * 9 7 5 12 12 H 1.48494 * 109.47514 * 330.00242 * 9 7 5 13 13 N 1.46899 * 109.47332 * 119.99279 * 2 1 3 14 14 C 1.46955 * 110.99973 * 176.43172 * 13 2 1 15 15 C 1.53059 * 109.36650 * 183.16889 * 14 13 2 16 16 N 1.46958 * 109.37891 * 301.63374 * 15 14 13 17 17 C 1.46904 * 110.99620 * 183.17437 * 16 15 14 18 18 C 1.53002 * 109.46614 * 170.00066 * 17 16 15 19 19 H 1.09002 * 110.75491 * 57.02228 * 18 17 16 20 20 C 1.55308 * 110.84365 * 180.71187 * 18 17 16 21 21 C 1.54947 * 100.93873 * 152.32448 * 20 18 17 22 22 O 1.43646 * 105.14029 * 323.55673 * 21 20 18 23 23 C 1.43238 * 109.96579 * 24.42594 * 22 21 20 24 24 C 1.46955 * 110.88141 * 59.30939 * 16 15 14 25 25 C 1.46961 * 111.00365 * 300.25792 * 13 2 1 26 26 H 1.08999 * 109.47071 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46795 * 300.00263 * 1 2 3 28 28 H 1.08992 * 109.47388 * 60.00766 * 1 2 3 29 29 H 1.09001 * 109.47161 * 182.81537 * 4 2 1 30 30 H 1.09005 * 109.46292 * 302.81274 * 4 2 1 31 31 H 0.96996 * 120.00512 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47066 * 63.21940 * 14 13 2 33 33 H 1.08997 * 109.51455 * 303.14431 * 14 13 2 34 34 H 1.08998 * 109.49007 * 181.66010 * 15 14 13 35 35 H 1.09002 * 109.48509 * 61.60879 * 15 14 13 36 36 H 1.08994 * 109.47230 * 289.99778 * 17 16 15 37 37 H 1.08999 * 109.47326 * 50.00262 * 17 16 15 38 38 H 1.08990 * 111.12957 * 270.24205 * 20 18 17 39 39 H 1.09006 * 111.12532 * 34.41044 * 20 18 17 40 40 H 1.09008 * 110.30732 * 204.64476 * 21 20 18 41 41 H 1.08998 * 110.39745 * 82.51901 * 21 20 18 42 42 H 1.09000 * 109.83161 * 238.77564 * 23 22 21 43 43 H 1.09000 * 109.90174 * 117.84942 * 23 22 21 44 44 H 1.09001 * 109.49186 * 60.64314 * 24 16 15 45 45 H 1.08999 * 109.49097 * 180.69085 * 24 16 15 46 46 H 1.08999 * 109.48760 * 56.83972 * 25 13 2 47 47 H 1.09005 * 109.48530 * 296.77495 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5955 0.0282 -2.4786 6 1 1.0863 0.9753 -2.3791 7 6 1.8389 -0.4954 -3.7307 8 7 2.4586 -1.6490 -3.8521 9 14 1.2872 0.4332 -5.2548 10 1 2.3717 1.3457 -5.6980 11 1 0.9795 -0.5335 -6.3392 12 1 0.0718 1.2257 -4.9387 13 7 2.0197 -0.6923 1.1995 14 6 3.4862 -0.7863 1.1915 15 6 3.9506 -1.5810 2.4144 16 7 3.4744 -0.9180 3.6364 17 6 3.9641 -1.6105 4.8359 18 6 3.6632 -0.7619 6.0730 19 1 2.5963 -0.5516 6.1470 20 6 4.1845 -1.4573 7.3602 21 6 4.4488 -0.2313 8.2702 22 8 4.9389 0.7915 7.3887 23 6 4.4812 0.5472 6.0536 24 6 2.0078 -0.8246 3.6441 25 6 1.5435 -0.0294 2.4216 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 3.1289 -0.7652 -1.2242 30 1 1.6361 -1.7334 -1.2746 31 1 2.6302 -2.0171 -4.7329 32 1 3.9146 0.2154 1.2248 33 1 3.8137 -1.2923 0.2833 34 1 5.0395 -1.6268 2.4263 35 1 3.5445 -2.5915 2.3670 36 1 3.4657 -2.5755 4.9273 37 1 5.0401 -1.7636 4.7532 38 1 3.4241 -2.1090 7.7902 39 1 5.1053 -2.0069 7.1644 40 1 5.1992 -0.4736 9.0228 41 1 3.5247 0.0927 8.7489 42 1 5.3345 0.4401 5.3839 43 1 3.8512 1.3720 5.7206 44 1 1.5794 -1.8263 3.6105 45 1 1.6804 -0.3193 4.5527 46 1 0.4546 0.0165 2.4097 47 1 1.9499 0.9809 2.4692 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429691278.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:47 Heat of formation + Delta-G solvation = -42.438389 kcal Electronic energy + Delta-G solvation = -23088.672633 eV Core-core repulsion = 19884.998252 eV Total energy + Delta-G solvation = -3203.674382 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.92903 -38.87452 -36.28998 -33.51912 -32.50511 -30.84941 -30.79995 -29.44133 -27.11492 -26.42427 -24.16688 -23.60825 -22.57483 -22.29722 -20.56592 -19.74604 -19.02072 -17.04544 -16.68765 -16.15785 -15.76868 -15.08012 -14.73251 -14.65748 -14.39644 -14.32020 -14.06050 -13.86890 -13.57489 -13.31769 -12.64412 -12.39378 -12.26710 -12.00893 -11.79584 -11.58891 -11.37408 -11.27157 -11.13937 -11.09356 -11.02545 -10.86317 -10.76678 -10.65562 -10.30288 -10.16034 -9.80150 -9.68272 -9.17931 -9.06256 -8.33769 -8.31997 -7.67074 -5.99537 -4.00851 3.31862 3.38384 3.41238 3.67511 3.80110 4.29255 4.37691 4.49497 4.54426 4.68918 4.91927 4.96064 5.10781 5.17348 5.28403 5.33932 5.36296 5.39581 5.44797 5.54447 5.57582 5.62452 5.65677 5.69041 5.79638 5.84623 5.90241 5.99666 6.05133 6.13666 6.20935 6.34410 6.37706 6.42961 6.71949 6.81563 6.92686 7.04234 7.09168 7.13793 7.55778 7.63166 7.82092 7.87759 8.08310 8.44654 9.05332 9.62188 11.11867 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041275 B = 0.002994 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.209113 B = 9350.303247 C = 9501.986961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.086 3.914 3 H 0.026 0.974 4 C 0.031 3.969 5 C -0.516 4.516 6 H 0.055 0.945 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.536 5.536 14 C 0.056 3.944 15 C 0.060 3.940 16 N -0.540 5.540 17 C 0.066 3.934 18 C -0.118 4.118 19 H 0.085 0.915 20 C -0.152 4.152 21 C 0.052 3.948 22 O -0.391 6.391 23 C 0.067 3.933 24 C 0.058 3.942 25 C 0.053 3.947 26 H 0.053 0.947 27 H 0.031 0.969 28 H 0.066 0.934 29 H 0.014 0.986 30 H 0.028 0.972 31 H 0.260 0.740 32 H 0.035 0.965 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.037 0.963 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.040 0.960 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.215 -0.271 21.628 21.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.021 4.021 3 H 0.044 0.956 4 C -0.006 4.006 5 C -0.555 4.555 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.261 5.261 14 C -0.072 4.072 15 C -0.068 4.068 16 N -0.265 5.265 17 C -0.062 4.062 18 C -0.137 4.137 19 H 0.103 0.897 20 C -0.190 4.190 21 C -0.025 4.025 22 O -0.311 6.311 23 C -0.010 4.010 24 C -0.070 4.070 25 C -0.075 4.075 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.032 0.968 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.058 0.942 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.394 -0.225 21.533 21.666 hybrid contribution -0.448 0.234 -1.008 1.128 sum 1.946 0.009 20.524 20.616 Atomic orbital electron populations 1.21749 0.95353 1.01515 1.00037 1.21813 0.94982 0.95197 0.90093 0.95624 1.19188 0.95883 0.96286 0.89244 1.21185 1.37540 1.05862 0.90887 0.92711 1.24983 0.95353 0.94952 0.99031 1.69960 1.41857 1.18092 1.23415 0.86627 0.79018 0.79614 0.82933 1.20748 1.21264 1.19913 1.62256 1.09262 1.52582 1.02034 1.22182 0.88364 0.99074 0.97591 1.22197 0.99331 0.96314 0.88940 1.62188 1.10438 1.52032 1.01818 1.22032 1.00509 0.94656 0.89019 1.22757 1.00932 0.95688 0.94332 0.89652 1.23301 1.02216 0.98215 0.95312 1.23318 0.99130 0.86836 0.93168 1.88399 1.74718 1.49238 1.18703 1.23072 0.98110 0.96332 0.83447 1.22198 0.87148 0.99562 0.98099 1.22154 1.00025 0.95596 0.89737 0.92769 0.95050 0.91486 0.96761 0.95379 0.93043 0.94717 0.88830 0.90756 0.94059 0.94449 0.90544 0.89996 0.90200 0.89987 0.92391 0.90759 0.91309 0.94197 0.91001 0.90361 0.94832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.74 37.16 0.32 -2.16 16 2 C 0.09 1.80 2.12 -67.71 -0.14 1.66 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C 0.03 0.80 4.22 -27.89 -0.12 0.68 16 5 C -0.52 -14.30 8.28 -34.44 -0.29 -14.58 16 6 H 0.05 1.48 7.13 -52.49 -0.37 1.11 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 9 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.54 -9.70 4.58 -226.48 -1.04 -10.74 16 14 C 0.06 0.97 5.24 -3.76 -0.02 0.95 16 15 C 0.06 0.83 5.61 -3.76 -0.02 0.81 16 16 N -0.54 -6.71 4.52 -234.46 -1.06 -7.78 16 17 C 0.07 0.66 4.28 -3.82 -0.02 0.64 16 18 C -0.12 -1.06 2.88 -88.67 -0.26 -1.31 16 19 H 0.09 0.77 6.45 -51.93 -0.34 0.43 16 20 C -0.15 -1.11 6.62 -24.48 -0.16 -1.27 16 21 C 0.05 0.42 7.78 38.19 0.30 0.72 16 22 O -0.39 -4.51 11.36 -35.23 -0.40 -4.91 16 23 C 0.07 0.71 7.22 37.88 0.27 0.98 16 24 C 0.06 0.73 5.42 -3.77 -0.02 0.71 16 25 C 0.05 0.81 5.31 -3.77 -0.02 0.79 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.03 0.51 6.33 -51.93 -0.33 0.18 16 28 H 0.07 1.36 6.92 -51.93 -0.36 1.00 16 29 H 0.01 0.38 6.12 -51.93 -0.32 0.06 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.80 6.01 -51.93 -0.31 1.49 16 34 H 0.07 0.92 8.07 -51.93 -0.42 0.51 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 37 H 0.08 0.73 7.96 -51.93 -0.41 0.32 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.56 8.04 -51.93 -0.42 0.14 16 40 H 0.08 0.56 8.14 -51.92 -0.42 0.13 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.82 7.76 -51.93 -0.40 0.42 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.78 6.31 -51.93 -0.33 0.45 16 46 H 0.08 1.13 6.13 -51.93 -0.32 0.81 16 47 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 353.00 15.07 5.32 5.32 Total: -1.00 -29.85 353.00 -10.26 -40.11 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -8.53 Total: -2.81 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -0.26 Total: -9.85 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: -1.36 Total: -44.39 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.40 Total: -4.91 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.85 -10.26 -40.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429691278.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.332 kcal (2) G-P(sol) polarization free energy of solvation -29.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds