Wall clock time and date at job start Tue Mar 31 2020 06:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47175 * 2 1 4 4 C 1.46508 * 120.00062 * 269.99884 * 3 2 1 5 5 C 1.53000 * 109.47148 * 270.00018 * 4 3 2 6 6 C 1.34776 * 120.00287 * 90.00336 * 3 2 1 7 7 O 1.21283 * 119.99734 * 0.26939 * 6 3 2 8 8 C 1.50700 * 120.00451 * 180.02562 * 6 3 2 9 9 C 1.52998 * 109.47236 * 176.09504 * 8 6 3 10 10 H 1.09001 * 109.47462 * 54.50823 * 9 8 6 11 11 C 1.53003 * 109.47152 * 174.51236 * 9 8 6 12 12 N 1.46906 * 109.46861 * 294.50752 * 9 8 6 13 13 C 1.46897 * 110.99829 * 155.13511 * 12 9 8 14 14 C 1.52994 * 109.47368 * 175.23563 * 13 12 9 15 15 C 1.50709 * 115.55048 * 39.78978 * 14 13 12 16 16 H 1.07995 * 120.00037 * 268.08322 * 15 14 13 17 17 C 1.37879 * 119.99477 * 88.08049 * 15 14 13 18 18 N 1.31518 * 119.99500 * 179.60405 * 17 15 14 19 19 Si 1.86802 * 120.00336 * 359.60020 * 17 15 14 20 20 H 1.48504 * 109.47009 * 91.56368 * 19 17 15 21 21 H 1.48503 * 109.47220 * 211.56112 * 19 17 15 22 22 H 1.48496 * 109.47048 * 331.56068 * 19 17 15 23 23 C 1.52998 * 117.50106 * 254.09056 * 14 13 12 24 24 C 1.52998 * 117.50483 * 185.46473 * 14 13 12 25 25 H 1.09000 * 109.47371 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47116 * 300.00304 * 1 2 3 27 27 H 1.09000 * 109.47086 * 59.99878 * 1 2 3 28 28 H 1.09001 * 109.46545 * 240.00201 * 2 1 3 29 29 H 1.09000 * 109.47086 * 120.00121 * 2 1 3 30 30 H 1.08996 * 109.46883 * 30.00227 * 4 3 2 31 31 H 1.09006 * 109.46870 * 150.00063 * 4 3 2 32 32 H 1.08999 * 109.46992 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.47206 * 300.00229 * 5 4 3 34 34 H 1.09000 * 109.46772 * 60.00287 * 5 4 3 35 35 H 1.09009 * 109.46799 * 296.09240 * 8 6 3 36 36 H 1.08996 * 109.47066 * 56.09060 * 8 6 3 37 37 H 1.09001 * 109.47242 * 179.97438 * 11 9 8 38 38 H 1.08998 * 109.46543 * 299.99613 * 11 9 8 39 39 H 1.09001 * 109.47274 * 59.99471 * 11 9 8 40 40 H 1.00899 * 110.99613 * 31.17873 * 12 9 8 41 41 H 1.09008 * 109.46883 * 295.23393 * 13 12 9 42 42 H 1.08996 * 109.47607 * 55.23129 * 13 12 9 43 43 H 0.97008 * 119.99522 * 180.02562 * 18 17 15 44 44 H 1.09001 * 117.49319 * 359.97438 * 23 14 13 45 45 H 1.09001 * 117.50357 * 145.01838 * 23 14 13 46 46 H 1.09003 * 117.49979 * 214.97929 * 24 14 13 47 47 H 1.09009 * 117.49608 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.7075 1.8314 -1.7104 6 6 2.2430 2.0165 1.1672 7 8 2.0456 1.4431 2.2175 8 6 2.7448 3.4375 1.1672 9 6 2.8224 3.9510 2.6064 10 1 3.4280 3.2690 3.2034 11 6 3.4594 5.3420 2.6179 12 7 1.4690 4.0275 3.1725 13 6 1.5053 3.9329 4.6380 14 6 0.0956 4.1350 5.1972 15 6 -1.0144 3.4843 4.4126 16 1 -1.5253 4.0381 3.6389 17 6 -1.3775 2.1819 4.6825 18 7 -2.3514 1.6165 4.0031 19 14 -0.4862 1.2202 6.0130 20 1 -1.1967 1.3893 7.3061 21 1 -0.4574 -0.2191 5.6485 22 1 0.9040 1.7260 6.1422 23 6 -0.2094 5.4705 5.8786 24 6 -0.0586 4.2002 6.7180 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.5817 1.6877 -2.0284 31 1 2.0956 3.1411 -1.1384 32 1 3.8893 2.3456 -2.6542 33 1 4.3884 2.2154 -0.9507 34 1 3.8744 0.7621 -1.8408 35 1 3.7361 3.4728 0.7149 36 1 2.0615 4.0641 0.5942 37 1 3.5143 5.7080 3.6432 38 1 4.4636 5.2852 2.1979 39 1 2.8539 6.0240 2.0210 40 1 0.8717 3.3160 2.7789 41 1 1.8743 2.9495 4.9296 42 1 2.1676 4.7020 5.0355 43 1 -2.6071 0.7003 4.1932 44 1 0.5945 6.2050 5.9288 45 1 -1.2130 5.8788 5.7594 46 1 -0.9630 3.7728 7.1510 47 1 0.8444 4.0987 7.3202 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430739430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:57 Heat of formation + Delta-G solvation = -39.798285 kcal Electronic energy + Delta-G solvation = -24045.414255 eV Core-core repulsion = 20841.854356 eV Total energy + Delta-G solvation = -3203.559898 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.18306 -39.09244 -37.48614 -36.65357 -34.18280 -33.31088 -31.96696 -30.48600 -28.67934 -27.76641 -25.98165 -24.46951 -24.01702 -23.26465 -21.40450 -20.80832 -19.74387 -18.22538 -18.11336 -17.44673 -16.91102 -16.59123 -16.31460 -15.84355 -15.29154 -15.13566 -14.81918 -14.78522 -14.65385 -14.23673 -13.87189 -13.74529 -13.48155 -13.40936 -13.09780 -12.98145 -12.91149 -12.82533 -12.58944 -12.52185 -12.41887 -12.08240 -12.00022 -11.97836 -11.89335 -11.62395 -11.34234 -10.89435 -10.73323 -10.57883 -10.21505 -9.68529 -9.02425 -8.27050 -6.27350 1.25174 1.32428 1.43246 1.68396 2.07575 2.36168 3.09628 3.17300 3.57821 3.60463 3.88616 4.05217 4.13560 4.20316 4.21748 4.35036 4.43014 4.44380 4.45583 4.49335 4.57843 4.61600 4.69779 4.71590 4.76608 4.82656 4.86660 4.93389 4.95640 4.99728 5.03961 5.06490 5.12178 5.20888 5.26433 5.38651 5.40820 5.50973 5.52783 5.67318 5.77919 6.32010 6.42515 6.52716 6.68198 6.81936 7.26094 7.39795 8.88126 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015849 B = 0.006608 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.196526 B = 4236.267256 C = 5422.243397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.114 3.886 3 N -0.613 5.613 4 C 0.095 3.905 5 C -0.164 4.164 6 C 0.497 3.503 7 O -0.585 6.585 8 C -0.129 4.129 9 C 0.084 3.916 10 H 0.021 0.979 11 C -0.126 4.126 12 N -0.670 5.670 13 C 0.111 3.889 14 C -0.023 4.023 15 C -0.458 4.458 16 H 0.036 0.964 17 C 0.030 3.970 18 N -0.943 5.943 19 Si 0.929 3.071 20 H -0.270 1.270 21 H -0.311 1.311 22 H -0.248 1.248 23 C -0.153 4.153 24 C -0.206 4.206 25 H 0.074 0.926 26 H 0.013 0.987 27 H 0.071 0.929 28 H 0.112 0.888 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.132 0.868 36 H 0.112 0.888 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.339 0.661 41 H -0.006 1.006 42 H 0.069 0.931 43 H 0.259 0.741 44 H 0.103 0.897 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.126 2.767 -12.761 19.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.008 4.008 3 N -0.346 5.346 4 C -0.026 4.026 5 C -0.222 4.222 6 C 0.287 3.713 7 O -0.465 6.465 8 C -0.169 4.169 9 C -0.026 4.026 10 H 0.039 0.961 11 C -0.184 4.184 12 N -0.303 5.303 13 C -0.019 4.019 14 C -0.024 4.024 15 C -0.496 4.496 16 H 0.054 0.946 17 C -0.167 4.167 18 N -0.584 5.584 19 Si 0.757 3.243 20 H -0.195 1.195 21 H -0.239 1.239 22 H -0.172 1.172 23 C -0.190 4.190 24 C -0.243 4.243 25 H 0.093 0.907 26 H 0.032 0.968 27 H 0.090 0.910 28 H 0.130 0.870 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.150 0.850 36 H 0.130 0.870 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.159 0.841 41 H 0.012 0.988 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.122 0.878 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.916 2.995 -12.269 19.545 hybrid contribution -0.299 -2.082 0.973 2.318 sum 14.618 0.913 -11.296 18.496 Atomic orbital electron populations 1.22059 0.96609 1.02353 1.01003 1.21380 0.93679 0.82799 1.02968 1.48195 1.65307 1.14364 1.06759 1.21897 0.98363 0.98391 0.83962 1.22164 0.95107 1.02472 1.02437 1.21465 0.76743 0.89891 0.83216 1.90757 1.53461 1.69183 1.33104 1.21960 1.04924 0.91131 0.98874 1.21468 0.90496 0.97331 0.93322 0.96128 1.21719 1.00236 0.94396 1.02053 1.60668 1.09751 1.54808 1.05060 1.21399 0.94983 0.96604 0.88880 1.19403 0.93905 0.98735 0.90329 1.20253 1.15005 0.96726 1.17586 0.94598 1.25550 0.94992 0.98344 0.97804 1.70019 1.31010 1.13999 1.43334 0.86054 0.81352 0.76592 0.80296 1.19523 1.23941 1.17211 1.22817 1.01677 0.90456 1.04020 1.22981 1.01612 1.04451 0.95288 0.90727 0.96800 0.91022 0.86993 0.93009 0.88801 0.89085 0.89077 0.92809 0.92666 0.84994 0.86996 0.93411 0.90122 0.91575 0.84129 0.98827 0.91227 0.93223 0.87840 0.90569 0.91194 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 10.24 71.98 0.74 -4.24 16 2 C 0.11 3.09 6.13 86.38 0.53 3.62 16 3 N -0.61 -16.22 2.47 -821.80 -2.03 -18.25 16 4 C 0.10 1.53 5.96 86.38 0.51 2.04 16 5 C -0.16 -1.91 10.24 71.98 0.74 -1.17 16 6 C 0.50 16.95 7.06 87.66 0.62 17.57 16 7 O -0.59 -27.17 14.35 -3.04 -0.04 -27.21 16 8 C -0.13 -3.40 3.95 29.85 0.12 -3.28 16 9 C 0.08 2.75 2.20 44.91 0.10 2.85 16 10 H 0.02 0.76 7.59 -2.39 -0.02 0.75 16 11 C -0.13 -3.09 9.41 71.98 0.68 -2.41 16 12 N -0.67 -28.63 5.97 -491.57 -2.94 -31.57 16 13 C 0.11 5.02 5.41 86.30 0.47 5.49 16 14 C -0.02 -1.11 1.21 -52.93 -0.06 -1.18 16 15 C -0.46 -27.22 8.07 25.60 0.21 -27.02 16 16 H 0.04 2.38 8.06 -2.91 -0.02 2.35 16 17 C 0.03 1.88 5.47 84.65 0.46 2.34 16 18 N -0.94 -61.81 13.96 21.45 0.30 -61.52 16 19 Si 0.93 50.25 25.02 68.60 1.72 51.96 16 20 H -0.27 -13.77 7.11 99.48 0.71 -13.06 16 21 H -0.31 -17.34 7.11 99.48 0.71 -16.63 16 22 H -0.25 -12.95 5.39 99.48 0.54 -12.41 16 23 C -0.15 -6.37 9.88 30.59 0.30 -6.07 16 24 C -0.21 -9.09 7.51 30.59 0.23 -8.86 16 25 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.11 2.05 8.07 -2.39 -0.02 2.03 16 29 H 0.05 1.70 7.42 -2.39 -0.02 1.68 16 30 H 0.09 1.23 8.07 -2.39 -0.02 1.21 16 31 H 0.09 1.31 6.33 -2.38 -0.02 1.29 16 32 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 0.69 7.34 -2.39 -0.02 0.67 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.13 2.36 7.34 -2.38 -0.02 2.34 16 36 H 0.11 2.68 7.19 -2.39 -0.02 2.66 16 37 H 0.05 1.24 7.38 -2.39 -0.02 1.22 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.34 17.17 5.63 -89.69 -0.50 16.67 16 41 H -0.01 -0.32 6.51 -2.38 -0.02 -0.34 16 42 H 0.07 2.73 7.13 -2.39 -0.02 2.71 16 43 H 0.26 16.24 8.31 -92.70 -0.77 15.47 16 44 H 0.10 3.63 8.08 -2.39 -0.02 3.61 16 45 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 46 H 0.07 3.29 7.09 -2.39 -0.02 3.27 16 47 H 0.09 3.67 8.14 -2.38 -0.02 3.66 16 Total: -1.00 -78.73 364.93 2.89 -75.85 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: 0.25 Total: 31.06 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: 5.64 Total: -20.32 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -4.67 Total: -111.33 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.04 Total: -27.21 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 1.72 Total: 51.96 kcal Total: -78.73 2.89 -75.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430739430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.047 kcal (2) G-P(sol) polarization free energy of solvation -78.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds