Wall clock time and date at job start Tue Mar 31 2020 05:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47068 * 2 1 4 4 C 1.52998 * 109.47144 * 119.99713 * 2 1 3 5 5 C 1.52996 * 109.47248 * 185.08995 * 4 2 1 6 6 C 1.53006 * 109.47143 * 185.85283 * 5 4 2 7 7 C 1.52996 * 109.46787 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.47249 * 60.00540 * 7 6 5 9 9 C 1.52997 * 109.46640 * 299.99486 * 8 7 6 10 10 C 1.52996 * 109.47236 * 60.00408 * 9 8 7 11 11 N 1.46498 * 109.46896 * 240.00031 * 2 1 3 12 12 C 1.34772 * 120.00329 * 85.00593 * 11 2 1 13 13 O 1.21586 * 119.99596 * 359.71670 * 12 11 2 14 14 N 1.34780 * 120.00270 * 180.02562 * 12 11 2 15 15 C 1.46493 * 120.00146 * 179.72289 * 14 12 11 16 16 C 1.53003 * 109.47057 * 179.97438 * 15 14 12 17 17 C 1.50701 * 109.47055 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99915 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00151 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99921 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00245 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47587 * 59.99899 * 21 19 17 23 23 H 1.48506 * 109.47312 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47291 * 299.99784 * 21 19 17 25 25 H 1.09002 * 109.47068 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47256 * 300.00471 * 1 2 3 27 27 H 1.08998 * 109.47116 * 60.00024 * 1 2 3 28 28 H 1.09002 * 109.47391 * 305.09766 * 4 2 1 29 29 H 1.09001 * 109.46870 * 65.09351 * 4 2 1 30 30 H 1.08994 * 109.47295 * 305.85738 * 5 4 2 31 31 H 1.09003 * 109.47313 * 300.00349 * 6 5 4 32 32 H 1.08999 * 109.47069 * 60.00414 * 6 5 4 33 33 H 1.08992 * 109.47448 * 299.99742 * 7 6 5 34 34 H 1.09007 * 109.47080 * 180.02562 * 7 6 5 35 35 H 1.08997 * 109.46932 * 179.97438 * 8 7 6 36 36 H 1.08994 * 109.47140 * 59.99602 * 8 7 6 37 37 H 1.09003 * 109.47365 * 299.99970 * 9 8 7 38 38 H 1.08999 * 109.46924 * 179.97438 * 9 8 7 39 39 H 1.08998 * 109.47566 * 179.97438 * 10 9 8 40 40 H 1.08994 * 109.47295 * 59.99425 * 10 9 8 41 41 H 0.97009 * 119.99672 * 264.99775 * 11 2 1 42 42 H 0.97002 * 119.99852 * 359.71053 * 14 12 11 43 43 H 1.08999 * 109.46853 * 299.99608 * 15 14 12 44 44 H 1.08999 * 109.47580 * 59.99388 * 15 14 12 45 45 H 1.08996 * 109.46741 * 299.99786 * 16 15 14 46 46 H 1.08994 * 109.47177 * 59.99943 * 16 15 14 47 47 H 0.97005 * 120.00333 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5646 -0.6113 1.3149 6 6 4.0869 -1.4533 2.4808 7 6 5.6115 -1.3429 2.5468 8 6 6.0083 0.1199 2.7562 9 6 5.4860 0.9618 1.5903 10 6 3.9615 0.8515 1.5243 11 7 2.0183 -0.6906 -1.1962 12 6 2.1471 -0.0183 -2.3571 13 8 1.8532 1.1602 -2.4129 14 7 2.5959 -0.6538 -3.4577 15 6 2.7301 0.0755 -4.7211 16 6 3.2557 -0.8705 -5.8027 17 6 3.3932 -0.1204 -7.1025 18 1 3.1323 0.9264 -7.1521 19 6 3.8521 -0.7705 -8.2284 20 7 4.1704 -2.0451 -8.1679 21 14 4.0233 0.1594 -9.8394 22 1 4.9751 1.2854 -9.6624 23 1 4.5321 -0.7591 -10.8895 24 1 2.6980 0.6910 -10.2473 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6041 -0.2628 2.1369 29 1 1.7531 -1.7718 1.2048 30 1 3.9956 -0.9751 0.3822 31 1 3.6559 -1.0894 3.4135 32 1 3.8039 -2.4953 2.3319 33 1 6.0428 -1.7065 1.6142 34 1 5.9836 -1.9431 3.3771 35 1 7.0944 0.1985 2.8036 36 1 5.5770 0.4835 3.6888 37 1 5.9174 0.5983 0.6577 38 1 5.7683 2.0040 1.7397 39 1 3.5893 1.4516 0.6940 40 1 3.5301 1.2150 2.4569 41 1 2.2490 -1.6318 -1.1526 42 1 2.8301 -1.5941 -3.4132 43 1 1.7574 0.4656 -5.0205 44 1 3.4286 0.9021 -4.5911 45 1 4.2285 -1.2602 -5.5030 46 1 2.5575 -1.6972 -5.9328 47 1 4.4936 -2.5025 -8.9600 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000446203628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:48 Heat of formation + Delta-G solvation = -83.221397 kcal Electronic energy + Delta-G solvation = -22559.979929 eV Core-core repulsion = 19354.537063 eV Total energy + Delta-G solvation = -3205.442866 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.90950 -38.79285 -36.08583 -34.59737 -32.88965 -32.24625 -30.95110 -30.48796 -28.98230 -26.30890 -24.68929 -23.00923 -22.12435 -21.19563 -20.61178 -20.34133 -19.78999 -17.96925 -16.39991 -15.95591 -15.75348 -15.01026 -14.78620 -14.46337 -14.42815 -14.29888 -14.11462 -13.57819 -13.46338 -13.16879 -12.93738 -12.50951 -12.36453 -12.31492 -12.16116 -11.89139 -11.48478 -11.27863 -11.16450 -11.08009 -11.05368 -10.97227 -10.62814 -10.60592 -10.27487 -10.18916 -10.02121 -9.85352 -9.51092 -9.24093 -8.91195 -8.45100 -8.18778 -6.06836 -4.09386 3.14562 3.33097 3.36657 3.40706 3.68406 4.36573 4.42071 4.48897 4.56243 4.73529 4.84555 4.94006 5.04442 5.13286 5.25788 5.30169 5.34222 5.35676 5.36612 5.44893 5.48885 5.54639 5.69144 5.71447 5.77708 5.83945 5.95675 5.96877 6.04492 6.05801 6.10901 6.22587 6.28035 6.34171 6.36924 6.44208 6.77080 6.83091 7.07103 7.33178 7.60737 7.66787 7.92583 8.29523 8.52124 8.95807 9.09095 9.55177 11.04825 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019979 B = 0.003088 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.120989 B = 9065.291265 C = 9769.917416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.159 3.841 3 H 0.089 0.911 4 C -0.122 4.122 5 C -0.088 4.088 6 C -0.113 4.113 7 C -0.120 4.120 8 C -0.119 4.119 9 C -0.121 4.121 10 C -0.116 4.116 11 N -0.747 5.747 12 C 0.699 3.301 13 O -0.599 6.599 14 N -0.740 5.740 15 C 0.141 3.859 16 C 0.014 3.986 17 C -0.521 4.521 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.391 0.609 42 H 0.392 0.608 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.969 -0.597 24.223 24.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.054 3.946 3 H 0.107 0.893 4 C -0.160 4.160 5 C -0.106 4.106 6 C -0.150 4.150 7 C -0.158 4.158 8 C -0.156 4.156 9 C -0.158 4.158 10 C -0.153 4.153 11 N -0.403 5.403 12 C 0.398 3.602 13 O -0.478 6.478 14 N -0.394 5.394 15 C 0.018 3.982 16 C -0.024 4.024 17 C -0.560 4.560 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.201 1.201 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.225 0.775 42 H 0.225 0.775 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.169 0.376 24.029 24.060 hybrid contribution 0.337 -0.541 -0.924 1.122 sum -0.832 -0.165 23.105 23.121 Atomic orbital electron populations 1.22212 0.95948 1.01796 1.02358 1.20786 0.93317 0.97549 0.82986 0.89307 1.21956 0.95650 1.00948 0.97424 1.21170 0.94714 0.95773 0.98948 1.21581 0.95491 0.99557 0.98414 1.21531 0.96047 0.96531 1.01679 1.21529 1.00210 0.95331 0.98534 1.21527 0.95969 0.99627 0.98697 1.21629 0.95661 0.96242 1.01806 1.45237 1.72589 1.13340 1.09133 1.16083 0.78502 0.85188 0.80377 1.90874 1.57543 1.14686 1.84732 1.45535 1.69968 1.13976 1.09890 1.21556 1.00295 0.95573 0.80776 1.19312 0.96519 0.94614 0.91949 1.21026 1.44270 0.96729 0.93936 0.92289 1.24990 0.95213 0.94916 0.99167 1.69947 1.44517 1.09249 1.29692 0.86574 0.78604 0.79587 0.82774 1.20098 1.21271 1.20117 0.92793 0.92129 0.91875 0.90593 0.91473 0.90745 0.92176 0.92154 0.91950 0.92325 0.92344 0.92267 0.91917 0.92199 0.91440 0.92238 0.77522 0.77518 0.92902 0.92904 0.96027 0.96030 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.48 37.16 0.35 -1.42 16 2 C 0.16 1.77 2.45 -67.93 -0.17 1.60 16 3 H 0.09 1.18 5.81 -51.93 -0.30 0.88 16 4 C -0.12 -0.98 4.21 -26.73 -0.11 -1.10 16 5 C -0.09 -0.76 2.14 -90.62 -0.19 -0.95 16 6 C -0.11 -0.85 5.20 -26.73 -0.14 -0.98 16 7 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 8 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 9 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 10 C -0.12 -1.09 4.98 -26.73 -0.13 -1.22 16 11 N -0.75 -9.44 4.44 -58.68 -0.26 -9.70 16 12 C 0.70 12.30 8.53 -86.92 -0.74 11.56 16 13 O -0.60 -12.95 16.01 5.29 0.08 -12.87 16 14 N -0.74 -13.31 5.56 -65.23 -0.36 -13.68 16 15 C 0.14 3.09 5.61 -4.04 -0.02 3.07 16 16 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 17 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 18 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 20 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 21 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.75 7.60 -51.93 -0.39 0.36 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.76 6.49 -51.93 -0.34 0.43 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.39 3.98 8.62 -40.82 -0.35 3.62 16 42 H 0.39 6.09 8.49 -40.82 -0.35 5.74 16 43 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 369.80 15.07 5.57 5.57 Total: -1.00 -31.70 369.80 -10.32 -42.02 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -8.88 Total: 3.80 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -2.18 Total: -6.09 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 0.11 Total: -48.98 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.08 Total: -12.87 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.70 -10.32 -42.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446203628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.200 kcal (2) G-P(sol) polarization free energy of solvation -31.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds