Wall clock time and date at job start Tue Mar 31 2020 05:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47281 * 2 1 4 4 C 1.53004 * 109.47205 * 239.99610 * 2 1 3 5 5 C 1.52999 * 109.47168 * 176.49683 * 4 2 1 6 6 C 1.52999 * 109.46888 * 65.83723 * 5 4 2 7 7 C 1.52999 * 109.46987 * 185.83446 * 5 4 2 8 8 C 1.53004 * 109.47044 * 305.83564 * 5 4 2 9 9 N 1.46504 * 109.46849 * 119.99952 * 2 1 3 10 10 C 1.34773 * 119.99674 * 275.27157 * 9 2 1 11 11 O 1.21589 * 120.00396 * 359.72926 * 10 9 2 12 12 N 1.34779 * 119.99503 * 179.72538 * 10 9 2 13 13 C 1.46509 * 119.99525 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46795 * 175.77193 * 13 12 10 15 15 C 1.50694 * 115.54904 * 65.52594 * 14 13 12 16 16 H 1.08004 * 120.00292 * 264.73952 * 15 14 13 17 17 C 1.37877 * 120.00052 * 84.74883 * 15 14 13 18 18 N 1.31515 * 119.99752 * 2.02213 * 17 15 14 19 19 Si 1.86796 * 120.00041 * 182.02877 * 17 15 14 20 20 H 1.48501 * 109.47360 * 59.99477 * 19 17 15 21 21 H 1.48500 * 109.47390 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47311 * 299.99741 * 19 17 15 23 23 C 1.52998 * 117.49570 * 279.85677 * 14 13 12 24 24 C 1.53001 * 117.49569 * 211.19474 * 14 13 12 25 25 H 1.09001 * 109.47696 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47525 * 300.00395 * 1 2 3 27 27 H 1.09008 * 109.46744 * 60.00251 * 1 2 3 28 28 H 1.08997 * 109.47251 * 296.50050 * 4 2 1 29 29 H 1.08997 * 109.46917 * 56.49958 * 4 2 1 30 30 H 1.08992 * 109.47333 * 51.73136 * 6 5 4 31 31 H 1.09007 * 109.46980 * 171.73399 * 6 5 4 32 32 H 1.09007 * 109.47118 * 291.72661 * 6 5 4 33 33 H 1.09000 * 109.47103 * 60.00242 * 7 5 4 34 34 H 1.09003 * 109.46715 * 179.97438 * 7 5 4 35 35 H 1.08996 * 109.47550 * 299.99729 * 7 5 4 36 36 H 1.08997 * 109.46915 * 59.99903 * 8 5 4 37 37 H 1.09005 * 109.46751 * 179.97438 * 8 5 4 38 38 H 1.09000 * 109.47273 * 299.99897 * 8 5 4 39 39 H 0.96998 * 119.99612 * 95.00213 * 9 2 1 40 40 H 0.96996 * 120.00408 * 0.02562 * 12 10 9 41 41 H 1.08994 * 109.46976 * 295.77113 * 13 12 10 42 42 H 1.09000 * 109.47117 * 55.77699 * 13 12 10 43 43 H 0.97004 * 119.99877 * 185.01793 * 18 17 15 44 44 H 1.09001 * 117.50219 * 359.97438 * 23 14 13 45 45 H 1.09003 * 117.49783 * 145.02522 * 23 14 13 46 46 H 1.08999 * 117.49809 * 214.97772 * 24 14 13 47 47 H 1.08996 * 117.49834 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5675 -0.6455 -1.2941 6 6 4.1520 -1.4388 -0.1237 7 6 4.0690 -1.2377 -2.6126 8 6 4.0087 0.8159 -1.1907 9 7 2.0183 -0.6906 1.1962 10 6 2.1417 -0.0196 2.3585 11 8 1.8526 1.1602 2.4131 12 7 2.5857 -0.6563 3.4603 13 6 2.7193 0.0730 4.7239 14 6 3.1373 -0.8971 5.8309 15 6 4.5050 -1.5102 5.6755 16 1 4.6126 -2.4805 5.2135 17 6 5.6192 -0.8327 6.1233 18 7 5.4848 0.3307 6.7218 19 14 7.3194 -1.5669 5.8798 20 1 7.5737 -1.7564 4.4290 21 1 8.3406 -0.6496 6.4463 22 1 7.3956 -2.8791 6.5711 23 6 2.0438 -1.7601 6.4637 24 6 2.6542 -0.5981 7.2515 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.7288 -1.7655 -1.2184 29 1 1.6263 -0.2451 -2.1381 30 1 3.7224 -2.4404 -0.1130 31 1 5.2340 -1.5087 -0.2365 32 1 3.9164 -0.9322 0.8124 33 1 3.6525 -0.6725 -3.4465 34 1 5.1572 -1.1832 -2.6447 35 1 3.7547 -2.2787 -2.6863 36 1 3.6514 1.2377 -0.2514 37 1 5.0970 0.8699 -1.2222 38 1 3.5923 1.3811 -2.0245 39 1 2.2489 -1.6318 1.1526 40 1 2.8167 -1.5974 3.4167 41 1 3.4763 0.8498 4.6166 42 1 1.7641 0.5297 4.9826 43 1 6.2709 0.8412 6.9716 44 1 1.0267 -1.6365 6.0917 45 1 2.3139 -2.7713 6.7681 46 1 3.3256 -0.8454 8.0738 47 1 2.0391 0.2898 7.3976 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454882735.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:36 Heat of formation + Delta-G solvation = -24.646598 kcal Electronic energy + Delta-G solvation = -23589.874454 eV Core-core repulsion = 20386.971582 eV Total energy + Delta-G solvation = -3202.902872 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.96669 -38.02877 -36.62891 -34.33557 -33.23878 -31.94930 -30.78092 -27.35887 -27.20991 -26.60705 -26.11633 -25.01672 -21.58490 -21.07759 -20.10518 -19.35022 -18.95123 -17.58598 -16.25888 -15.91340 -15.25889 -14.71898 -14.60961 -14.49432 -14.11713 -13.95717 -13.67670 -13.36890 -12.88751 -12.62927 -12.59045 -12.47262 -12.27485 -11.84037 -11.68806 -11.65841 -11.57895 -11.47772 -11.21202 -10.95483 -10.92345 -10.68261 -10.54307 -10.50934 -10.26156 -10.22366 -9.65956 -9.42093 -9.02057 -8.60512 -8.45354 -8.20124 -7.91851 -6.06063 -4.15035 3.27588 3.30021 3.33752 3.34819 3.85543 4.36693 4.57176 4.74384 4.76893 4.90752 5.21407 5.23252 5.30601 5.33906 5.40483 5.53382 5.56996 5.60175 5.72479 5.77566 5.79587 5.83225 5.90418 6.04589 6.05556 6.08745 6.11359 6.23258 6.35230 6.37474 6.42316 6.49383 6.51299 6.63149 6.72925 6.89244 6.92713 7.13878 7.37822 7.46165 7.49188 7.66793 7.82255 8.36205 8.72129 8.86119 9.27085 9.51957 11.02051 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016338 B = 0.005033 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.402467 B = 5562.182978 C = 6682.455773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.158 3.842 3 H 0.092 0.908 4 C -0.116 4.116 5 C -0.066 4.066 6 C -0.161 4.161 7 C -0.140 4.140 8 C -0.146 4.146 9 N -0.745 5.745 10 C 0.696 3.304 11 O -0.604 6.604 12 N -0.722 5.722 13 C 0.183 3.817 14 C 0.026 3.974 15 C -0.498 4.498 16 H 0.058 0.942 17 C 0.074 3.926 18 N -0.875 5.875 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.211 4.211 24 C -0.143 4.143 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.394 0.606 40 H 0.395 0.605 41 H 0.065 0.935 42 H 0.036 0.964 43 H 0.262 0.738 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.683 -3.805 -15.527 16.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.052 3.948 3 H 0.109 0.891 4 C -0.154 4.154 5 C -0.066 4.066 6 C -0.218 4.218 7 C -0.198 4.198 8 C -0.203 4.203 9 N -0.404 5.404 10 C 0.396 3.604 11 O -0.484 6.484 12 N -0.375 5.375 13 C 0.060 3.940 14 C 0.025 3.975 15 C -0.535 4.535 16 H 0.076 0.924 17 C -0.130 4.130 18 N -0.511 5.511 19 Si 0.716 3.284 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.248 4.248 24 C -0.182 4.182 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.230 0.770 40 H 0.228 0.772 41 H 0.083 0.917 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.095 0.905 46 H 0.104 0.896 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.829 -2.565 -15.285 16.558 hybrid contribution 1.231 -1.218 -0.127 1.737 sum -4.598 -3.783 -15.411 16.522 Atomic orbital electron populations 1.22217 0.96150 1.01654 1.02246 1.20811 0.93077 0.97793 0.83100 0.89053 1.21971 0.95098 1.00918 0.97373 1.20496 0.94576 0.96057 0.95495 1.22366 1.00421 0.99413 0.99635 1.21882 1.00950 1.00405 0.96514 1.21965 1.01046 0.95133 1.02198 1.45575 1.72295 1.13608 1.08903 1.16072 0.78732 0.85191 0.80375 1.90861 1.58140 1.14606 1.84803 1.45177 1.69190 1.13999 1.09113 1.20813 0.98241 0.94109 0.80870 1.19048 0.92620 0.95659 0.90162 1.20297 0.89070 1.03990 1.40159 0.92379 1.24964 0.98868 0.95188 0.93961 1.69984 1.29723 1.12673 1.38704 0.86726 0.84158 0.79024 0.78465 1.20255 1.21293 1.20272 1.23006 0.96954 0.96051 1.08814 1.22474 1.01889 0.96496 0.97307 0.92910 0.91920 0.92247 0.91569 0.90718 0.93115 0.93158 0.89917 0.92969 0.92782 0.92887 0.91591 0.92919 0.93017 0.77020 0.77152 0.91695 0.94589 0.92845 0.91738 0.90494 0.89644 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.48 37.16 0.35 -1.53 16 2 C 0.16 1.93 2.19 -67.93 -0.15 1.78 16 3 H 0.09 1.32 5.57 -51.93 -0.29 1.03 16 4 C -0.12 -1.09 4.00 -26.73 -0.11 -1.20 16 5 C -0.07 -0.68 0.80 -154.51 -0.12 -0.80 16 6 C -0.16 -1.87 6.99 37.16 0.26 -1.61 16 7 C -0.14 -1.23 8.47 37.16 0.31 -0.92 16 8 C -0.15 -1.68 7.96 37.16 0.30 -1.38 16 9 N -0.75 -10.33 2.81 -58.67 -0.16 -10.49 16 10 C 0.70 13.04 8.09 -86.92 -0.70 12.34 16 11 O -0.60 -13.66 16.01 5.29 0.08 -13.58 16 12 N -0.72 -14.01 5.49 -65.22 -0.36 -14.36 16 13 C 0.18 4.19 5.50 -4.03 -0.02 4.17 16 14 C 0.03 0.61 1.44 -155.66 -0.22 0.39 16 15 C -0.50 -12.73 8.62 -34.44 -0.30 -13.02 16 16 H 0.06 1.45 7.81 -52.48 -0.41 1.04 16 17 C 0.07 1.96 5.43 -17.82 -0.10 1.87 16 18 N -0.87 -24.30 12.72 55.43 0.70 -23.60 16 19 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 C -0.21 -4.41 9.96 -26.69 -0.27 -4.68 16 24 C -0.14 -3.31 9.22 -26.69 -0.25 -3.55 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 28 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.51 7.79 -51.93 -0.40 0.11 16 31 H 0.05 0.60 8.13 -51.93 -0.42 0.18 16 32 H 0.08 1.15 5.15 -51.93 -0.27 0.88 16 33 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.92 6.26 -51.93 -0.32 0.59 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.39 4.65 6.73 -40.82 -0.27 4.38 16 40 H 0.40 7.00 8.36 -40.82 -0.34 6.66 16 41 H 0.06 1.70 8.14 -51.93 -0.42 1.28 16 42 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 43 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 45 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 46 H 0.09 2.11 8.14 -51.93 -0.42 1.68 16 47 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 370.33 15.07 5.58 5.58 Total: -1.00 -29.13 370.33 -8.82 -37.95 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -8.63 Total: 11.12 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -1.01 Total: -8.16 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.18 Total: -48.45 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.08 Total: -13.58 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.13 -8.82 -37.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454882735.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.299 kcal (2) G-P(sol) polarization free energy of solvation -29.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds