Wall clock time and date at job start Tue Mar 31 2020 05:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47281 * 2 1 4 4 C 1.53004 * 109.47205 * 239.99610 * 2 1 3 5 5 C 1.52999 * 109.47168 * 176.49683 * 4 2 1 6 6 C 1.52999 * 109.46888 * 65.83723 * 5 4 2 7 7 C 1.52999 * 109.46987 * 185.83446 * 5 4 2 8 8 C 1.53004 * 109.47044 * 305.83564 * 5 4 2 9 9 N 1.46504 * 109.46849 * 119.99952 * 2 1 3 10 10 C 1.34773 * 119.99674 * 275.27157 * 9 2 1 11 11 O 1.21589 * 120.00396 * 359.72926 * 10 9 2 12 12 N 1.34779 * 119.99503 * 179.72538 * 10 9 2 13 13 C 1.46509 * 119.99525 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46795 * 175.77193 * 13 12 10 15 15 C 1.50694 * 115.54904 * 65.52594 * 14 13 12 16 16 H 1.08004 * 120.00292 * 264.73952 * 15 14 13 17 17 C 1.37877 * 120.00052 * 84.74883 * 15 14 13 18 18 N 1.31515 * 119.99752 * 2.02213 * 17 15 14 19 19 Si 1.86796 * 120.00041 * 182.02877 * 17 15 14 20 20 H 1.48501 * 109.47360 * 59.99477 * 19 17 15 21 21 H 1.48500 * 109.47390 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47311 * 299.99741 * 19 17 15 23 23 C 1.52998 * 117.49570 * 279.85677 * 14 13 12 24 24 C 1.53001 * 117.49569 * 211.19474 * 14 13 12 25 25 H 1.09001 * 109.47696 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47525 * 300.00395 * 1 2 3 27 27 H 1.09008 * 109.46744 * 60.00251 * 1 2 3 28 28 H 1.08997 * 109.47251 * 296.50050 * 4 2 1 29 29 H 1.08997 * 109.46917 * 56.49958 * 4 2 1 30 30 H 1.08992 * 109.47333 * 51.73136 * 6 5 4 31 31 H 1.09007 * 109.46980 * 171.73399 * 6 5 4 32 32 H 1.09007 * 109.47118 * 291.72661 * 6 5 4 33 33 H 1.09000 * 109.47103 * 60.00242 * 7 5 4 34 34 H 1.09003 * 109.46715 * 179.97438 * 7 5 4 35 35 H 1.08996 * 109.47550 * 299.99729 * 7 5 4 36 36 H 1.08997 * 109.46915 * 59.99903 * 8 5 4 37 37 H 1.09005 * 109.46751 * 179.97438 * 8 5 4 38 38 H 1.09000 * 109.47273 * 299.99897 * 8 5 4 39 39 H 0.96998 * 119.99612 * 95.00213 * 9 2 1 40 40 H 0.96996 * 120.00408 * 0.02562 * 12 10 9 41 41 H 1.08994 * 109.46976 * 295.77113 * 13 12 10 42 42 H 1.09000 * 109.47117 * 55.77699 * 13 12 10 43 43 H 0.97004 * 119.99877 * 185.01793 * 18 17 15 44 44 H 1.09001 * 117.50219 * 359.97438 * 23 14 13 45 45 H 1.09003 * 117.49783 * 145.02522 * 23 14 13 46 46 H 1.08999 * 117.49809 * 214.97772 * 24 14 13 47 47 H 1.08996 * 117.49834 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5675 -0.6455 -1.2941 6 6 4.1520 -1.4388 -0.1237 7 6 4.0690 -1.2377 -2.6126 8 6 4.0087 0.8159 -1.1907 9 7 2.0183 -0.6906 1.1962 10 6 2.1417 -0.0196 2.3585 11 8 1.8526 1.1602 2.4131 12 7 2.5857 -0.6563 3.4603 13 6 2.7193 0.0730 4.7239 14 6 3.1373 -0.8971 5.8309 15 6 4.5050 -1.5102 5.6755 16 1 4.6126 -2.4805 5.2135 17 6 5.6192 -0.8327 6.1233 18 7 5.4848 0.3307 6.7218 19 14 7.3194 -1.5669 5.8798 20 1 7.5737 -1.7564 4.4290 21 1 8.3406 -0.6496 6.4463 22 1 7.3956 -2.8791 6.5711 23 6 2.0438 -1.7601 6.4637 24 6 2.6542 -0.5981 7.2515 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.7288 -1.7655 -1.2184 29 1 1.6263 -0.2451 -2.1381 30 1 3.7224 -2.4404 -0.1130 31 1 5.2340 -1.5087 -0.2365 32 1 3.9164 -0.9322 0.8124 33 1 3.6525 -0.6725 -3.4465 34 1 5.1572 -1.1832 -2.6447 35 1 3.7547 -2.2787 -2.6863 36 1 3.6514 1.2377 -0.2514 37 1 5.0970 0.8699 -1.2222 38 1 3.5923 1.3811 -2.0245 39 1 2.2489 -1.6318 1.1526 40 1 2.8167 -1.5974 3.4167 41 1 3.4763 0.8498 4.6166 42 1 1.7641 0.5297 4.9826 43 1 6.2709 0.8412 6.9716 44 1 1.0267 -1.6365 6.0917 45 1 2.3139 -2.7713 6.7681 46 1 3.3256 -0.8454 8.0738 47 1 2.0391 0.2898 7.3976 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454882735.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:35 Heat of formation + Delta-G solvation = -40.959429 kcal Electronic energy + Delta-G solvation = -23590.581832 eV Core-core repulsion = 20386.971582 eV Total energy + Delta-G solvation = -3203.610249 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.28420 -39.27351 -38.32476 -35.45883 -34.91584 -33.94578 -31.95258 -28.22817 -28.18006 -27.84886 -27.46702 -26.87047 -23.02385 -22.58249 -21.50354 -21.17802 -19.90862 -19.05792 -17.98098 -17.24338 -16.73041 -16.45559 -15.82878 -15.79204 -15.57567 -15.11776 -14.98893 -14.76494 -14.38870 -13.86428 -13.79366 -13.47317 -13.44979 -13.32032 -13.10245 -12.91220 -12.78740 -12.58059 -12.53156 -12.40189 -12.37086 -12.18434 -12.01839 -11.53290 -11.42206 -11.35833 -11.18823 -11.14516 -10.93401 -10.41429 -10.08571 -9.98243 -9.43470 -8.08487 -6.21624 1.43699 1.44339 1.50892 1.92974 2.33667 2.43527 3.20574 3.38331 3.64964 3.75001 3.89926 3.98758 4.26508 4.32218 4.40124 4.41761 4.57915 4.67550 4.72212 4.72857 4.76437 4.82207 4.87379 4.88785 4.96671 4.99004 5.01450 5.03795 5.12915 5.16186 5.17273 5.25963 5.29849 5.36230 5.48065 5.49749 5.59194 5.59817 5.64398 5.73345 5.78411 5.81581 6.23624 6.38466 6.85559 7.31384 7.47907 7.77831 8.99335 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016338 B = 0.005033 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.402467 B = 5562.182978 C = 6682.455773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.153 3.847 3 H 0.065 0.935 4 C -0.105 4.105 5 C -0.065 4.065 6 C -0.162 4.162 7 C -0.135 4.135 8 C -0.145 4.145 9 N -0.723 5.723 10 C 0.695 3.305 11 O -0.647 6.647 12 N -0.718 5.718 13 C 0.202 3.798 14 C 0.005 3.995 15 C -0.500 4.500 16 H 0.064 0.936 17 C 0.025 3.975 18 N -0.909 5.909 19 Si 0.947 3.053 20 H -0.272 1.272 21 H -0.293 1.293 22 H -0.269 1.269 23 C -0.176 4.176 24 C -0.155 4.155 25 H 0.069 0.931 26 H 0.029 0.971 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.033 0.967 37 H 0.045 0.955 38 H 0.066 0.934 39 H 0.408 0.592 40 H 0.405 0.595 41 H 0.021 0.979 42 H 0.031 0.969 43 H 0.258 0.742 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.064 0.936 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.425 -6.200 -17.853 19.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.083 0.917 4 C -0.143 4.143 5 C -0.065 4.065 6 C -0.219 4.219 7 C -0.192 4.192 8 C -0.202 4.202 9 N -0.381 5.381 10 C 0.395 3.605 11 O -0.530 6.530 12 N -0.372 5.372 13 C 0.077 3.923 14 C 0.004 3.996 15 C -0.538 4.538 16 H 0.082 0.918 17 C -0.176 4.176 18 N -0.546 5.546 19 Si 0.773 3.227 20 H -0.198 1.198 21 H -0.219 1.219 22 H -0.194 1.194 23 C -0.213 4.213 24 C -0.194 4.194 25 H 0.088 0.912 26 H 0.048 0.952 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.115 0.885 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.246 0.754 40 H 0.240 0.760 41 H 0.039 0.961 42 H 0.049 0.951 43 H 0.067 0.933 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.083 0.917 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.576 -5.024 -17.655 19.498 hybrid contribution 1.442 -0.452 0.560 1.611 sum -5.135 -5.475 -17.095 18.670 Atomic orbital electron populations 1.22160 0.95116 1.02607 1.01782 1.21000 0.93844 0.96882 0.83460 0.91707 1.21938 0.94183 1.01912 0.96237 1.20501 0.95258 0.94767 0.95980 1.22355 1.00258 1.00406 0.98885 1.21824 1.00673 1.01181 0.95557 1.21946 1.00636 0.96508 1.01092 1.45438 1.70888 1.14039 1.07738 1.16214 0.78325 0.84721 0.81225 1.90831 1.59900 1.16676 1.85574 1.44935 1.69572 1.14201 1.08449 1.20337 0.96387 0.93252 0.82345 1.19067 0.93123 0.97001 0.90409 1.20618 0.90036 1.04003 1.39124 0.91818 1.25681 1.02284 0.95532 0.94066 1.70116 1.30233 1.14033 1.40238 0.85791 0.80097 0.78339 0.78449 1.19751 1.21861 1.19377 1.22983 0.97062 0.95449 1.05781 1.22398 1.02333 0.98079 0.96561 0.91154 0.95179 0.89961 0.89465 0.88536 0.91085 0.93971 0.92699 0.91732 0.93316 0.91621 0.94766 0.93559 0.91496 0.75419 0.75991 0.96082 0.95054 0.93322 0.89509 0.89599 0.91732 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 9.48 71.98 0.68 -2.64 16 2 C 0.15 3.53 2.19 44.99 0.10 3.63 16 3 H 0.06 1.90 5.57 -2.39 -0.01 1.88 16 4 C -0.11 -1.64 4.00 30.60 0.12 -1.51 16 5 C -0.07 -1.19 0.80 -52.18 -0.04 -1.23 16 6 C -0.16 -3.49 6.99 71.98 0.50 -2.99 16 7 C -0.14 -1.93 8.47 71.98 0.61 -1.32 16 8 C -0.14 -3.24 7.96 71.98 0.57 -2.67 16 9 N -0.72 -19.40 2.81 -457.81 -1.29 -20.69 16 10 C 0.70 26.41 8.09 179.05 1.45 27.86 16 11 O -0.65 -30.39 16.01 -4.00 -0.06 -30.45 16 12 N -0.72 -28.02 5.49 -478.51 -2.63 -30.65 16 13 C 0.20 9.48 5.50 86.38 0.48 9.96 16 14 C 0.00 0.23 1.44 -52.93 -0.08 0.15 16 15 C -0.50 -25.53 8.62 25.60 0.22 -25.31 16 16 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 17 C 0.02 1.32 5.43 84.65 0.46 1.78 16 18 N -0.91 -51.89 12.72 21.45 0.27 -51.61 16 19 Si 0.95 42.41 29.54 68.60 2.03 44.44 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 21 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 C -0.18 -7.06 9.96 30.62 0.30 -6.76 16 24 C -0.16 -7.21 9.22 30.62 0.28 -6.93 16 25 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.09 1.07 8.12 -2.39 -0.02 1.05 16 29 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.22 7.79 -2.39 -0.02 1.20 16 31 H 0.04 0.96 8.13 -2.38 -0.02 0.94 16 32 H 0.05 1.50 5.15 -2.38 -0.01 1.48 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.03 0.98 6.26 -2.39 -0.01 0.96 16 37 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.41 8.80 6.73 -92.71 -0.62 8.18 16 40 H 0.40 14.02 8.36 -92.71 -0.78 13.25 16 41 H 0.02 1.15 8.14 -2.39 -0.02 1.14 16 42 H 0.03 1.48 8.09 -2.39 -0.02 1.46 16 43 H 0.26 14.30 8.32 -92.71 -0.77 13.53 16 44 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 45 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 46 H 0.06 3.24 8.14 -2.39 -0.02 3.22 16 47 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -65.19 370.33 3.52 -61.66 By element: Atomic # 1 Polarization: 35.74 SS G_CDS: -0.46 Total: 35.27 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 5.66 Total: -7.98 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -3.64 Total: -102.95 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.06 Total: -30.45 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -65.19 3.52 -61.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454882735.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.703 kcal (2) G-P(sol) polarization free energy of solvation -65.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds