Wall clock time and date at job start Tue Mar 31 2020 05:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46573 * 2 1 4 4 C 1.53002 * 109.47307 * 119.99579 * 2 1 3 5 5 C 1.52994 * 109.47104 * 186.26564 * 4 2 1 6 6 C 1.53002 * 109.47235 * 55.22901 * 5 4 2 7 7 C 1.53005 * 109.46963 * 175.22685 * 5 4 2 8 8 C 1.53002 * 109.47233 * 295.22761 * 5 4 2 9 9 N 1.46498 * 109.47083 * 239.99903 * 2 1 3 10 10 C 1.34777 * 120.00112 * 85.00134 * 9 2 1 11 11 O 1.21590 * 120.00099 * 359.97438 * 10 9 2 12 12 N 1.34774 * 120.00249 * 179.97438 * 10 9 2 13 13 C 1.46504 * 120.00158 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47173 * 177.52765 * 13 12 10 15 15 C 1.50703 * 115.54963 * 296.31981 * 14 13 12 16 16 H 1.07993 * 120.00006 * 89.18275 * 15 14 13 17 17 C 1.37879 * 119.99529 * 268.90741 * 15 14 13 18 18 N 1.31509 * 120.00251 * 358.70940 * 17 15 14 19 19 Si 1.86803 * 119.99724 * 178.71458 * 17 15 14 20 20 H 1.48497 * 109.47185 * 89.99746 * 19 17 15 21 21 H 1.48501 * 109.47153 * 209.99946 * 19 17 15 22 22 H 1.48500 * 109.46977 * 330.00031 * 19 17 15 23 23 C 1.52999 * 117.51694 * 82.01688 * 14 13 12 24 24 C 1.52998 * 117.49780 * 150.64710 * 14 13 12 25 25 H 1.08999 * 109.47264 * 60.00104 * 1 2 3 26 26 H 1.09007 * 109.46798 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47227 * 299.99953 * 1 2 3 28 28 H 1.09001 * 109.46937 * 306.27050 * 4 2 1 29 29 H 1.09007 * 109.46567 * 66.26557 * 4 2 1 30 30 H 1.08998 * 109.46966 * 59.99819 * 6 5 4 31 31 H 1.09000 * 109.46676 * 179.97438 * 6 5 4 32 32 H 1.08993 * 109.46981 * 299.99836 * 6 5 4 33 33 H 1.08999 * 109.46761 * 60.00243 * 7 5 4 34 34 H 1.08997 * 109.46841 * 179.97438 * 7 5 4 35 35 H 1.08998 * 109.47308 * 300.00223 * 7 5 4 36 36 H 1.08994 * 109.47240 * 67.30998 * 8 5 4 37 37 H 1.08998 * 109.46791 * 187.31182 * 8 5 4 38 38 H 1.09004 * 109.46798 * 307.31397 * 8 5 4 39 39 H 0.96996 * 119.99885 * 264.99470 * 9 2 1 40 40 H 0.97000 * 119.99800 * 0.02562 * 12 10 9 41 41 H 1.09004 * 109.46450 * 57.52906 * 13 12 10 42 42 H 1.08998 * 109.46768 * 297.53284 * 13 12 10 43 43 H 0.97002 * 120.00308 * 185.13953 * 18 17 15 44 44 H 1.09000 * 117.49809 * 214.97297 * 23 14 13 45 45 H 1.09003 * 117.49520 * 359.97438 * 23 14 13 46 46 H 1.09003 * 117.49904 * 359.97438 * 24 14 13 47 47 H 1.09001 * 117.49579 * 144.97535 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5619 -0.5862 1.3304 6 6 3.9457 0.8942 1.2866 7 6 4.0596 -1.2036 2.6390 8 6 4.2023 -1.3144 0.1470 9 7 2.0183 -0.6906 -1.1961 10 6 2.1471 -0.0183 -2.3571 11 8 1.8575 1.1613 -2.4119 12 7 2.5968 -0.6535 -3.4574 13 6 2.7362 0.0772 -4.7196 14 6 3.3193 -0.8527 -5.7855 15 6 4.7134 -1.3575 -5.5155 16 1 4.8584 -2.2702 -4.9569 17 6 5.8035 -0.6568 -5.9866 18 7 5.6261 0.4381 -6.6932 19 14 7.5322 -1.2630 -5.6214 20 1 7.9717 -2.1848 -6.6995 21 1 8.4587 -0.1046 -5.5523 22 1 7.5405 -1.9817 -4.3218 23 6 2.3535 -1.7959 -6.5055 24 6 2.9339 -0.5869 -7.2421 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.5880 -0.2761 2.1357 29 1 1.7712 -1.7761 1.1950 30 1 3.4895 1.4129 2.1298 31 1 5.0299 0.9903 1.3449 32 1 3.5912 1.3340 0.3545 33 1 3.7861 -2.2583 2.6701 34 1 5.1438 -1.1079 2.6965 35 1 3.6033 -0.6849 3.4821 36 1 3.9516 -0.7950 -0.7779 37 1 5.2849 -1.3302 0.2729 38 1 3.8266 -2.3366 0.1029 39 1 2.2491 -1.6317 -1.1525 40 1 2.8275 -1.5947 -3.4139 41 1 3.4027 0.9276 -4.5752 42 1 1.7581 0.4330 -5.0433 43 1 6.3887 0.8897 -7.0875 44 1 2.7265 -2.7816 -6.7840 45 1 1.3025 -1.7544 -6.2196 46 1 2.2646 0.2501 -7.4410 47 1 3.6888 -0.7768 -8.0051 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454882736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:38 Heat of formation + Delta-G solvation = -25.724834 kcal Electronic energy + Delta-G solvation = -23581.232524 eV Core-core repulsion = 20378.282896 eV Total energy + Delta-G solvation = -3202.949628 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.94518 -38.02729 -36.63671 -34.35391 -33.25265 -31.91622 -30.75544 -27.35967 -27.19246 -26.60699 -26.13222 -25.01885 -21.58933 -21.05300 -20.11343 -19.35198 -18.93333 -17.59295 -16.26005 -15.89718 -15.26520 -14.70654 -14.61232 -14.48908 -14.11148 -13.97788 -13.69393 -13.32900 -12.89473 -12.65363 -12.57097 -12.47201 -12.27705 -11.86111 -11.68515 -11.66440 -11.56634 -11.47236 -11.19444 -10.99490 -10.88660 -10.67655 -10.53562 -10.50239 -10.26088 -10.19511 -9.64744 -9.42961 -9.01069 -8.60988 -8.43947 -8.21358 -7.92042 -6.04485 -4.14492 3.26386 3.29639 3.34737 3.35844 3.85433 4.36767 4.57165 4.74746 4.77248 4.90786 5.21905 5.22298 5.30735 5.33940 5.43143 5.53476 5.57303 5.60627 5.73041 5.77878 5.79557 5.83504 5.91370 6.05456 6.05686 6.09726 6.11702 6.23316 6.35340 6.38859 6.43166 6.50768 6.52061 6.60588 6.74115 6.87572 6.92645 7.16127 7.37544 7.45892 7.52304 7.67807 7.82742 8.36761 8.71598 8.86642 9.26749 9.52447 11.02393 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016235 B = 0.005063 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.227788 B = 5529.436156 C = 6668.069690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.157 3.843 3 H 0.092 0.908 4 C -0.115 4.115 5 C -0.067 4.067 6 C -0.146 4.146 7 C -0.140 4.140 8 C -0.158 4.158 9 N -0.745 5.745 10 C 0.697 3.303 11 O -0.604 6.604 12 N -0.722 5.722 13 C 0.183 3.817 14 C 0.022 3.978 15 C -0.495 4.495 16 H 0.058 0.942 17 C 0.073 3.927 18 N -0.875 5.875 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.213 4.213 24 C -0.137 4.137 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.393 0.607 40 H 0.395 0.605 41 H 0.065 0.935 42 H 0.033 0.967 43 H 0.261 0.739 44 H 0.077 0.923 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.096 -4.160 15.179 16.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.052 3.948 3 H 0.110 0.890 4 C -0.153 4.153 5 C -0.067 4.067 6 C -0.204 4.204 7 C -0.197 4.197 8 C -0.216 4.216 9 N -0.403 5.403 10 C 0.397 3.603 11 O -0.484 6.484 12 N -0.374 5.374 13 C 0.059 3.941 14 C 0.021 3.979 15 C -0.532 4.532 16 H 0.076 0.924 17 C -0.131 4.131 18 N -0.512 5.512 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.250 4.250 24 C -0.175 4.175 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.228 0.772 40 H 0.228 0.772 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.245 -2.853 15.051 16.543 hybrid contribution 1.250 -1.190 0.109 1.729 sum -4.995 -4.043 15.160 16.465 Atomic orbital electron populations 1.22217 0.96147 1.01641 1.02238 1.20825 0.93083 0.97840 0.83080 0.88999 1.21968 0.95160 1.00852 0.97360 1.20506 0.94617 0.96013 0.95545 1.21968 1.01203 0.95028 1.02161 1.21880 1.00957 1.00333 0.96571 1.22307 1.00164 0.99750 0.99352 1.45506 1.72291 1.13499 1.08995 1.16063 0.78719 0.85164 0.80359 1.90863 1.58148 1.14600 1.84752 1.45151 1.69004 1.13930 1.09332 1.20843 0.97491 0.94613 0.81135 1.19067 0.93362 0.95670 0.89808 1.20314 0.88292 1.08443 1.36198 0.92360 1.24971 0.98858 0.94336 0.94926 1.69997 1.30726 1.17243 1.33193 0.86647 0.84643 0.78271 0.78764 1.20742 1.21227 1.19857 1.23046 0.96954 0.95469 1.09555 1.22408 1.01215 0.96387 0.97522 0.91933 0.92916 0.92245 0.90720 0.91567 0.93009 0.92892 0.91614 0.92890 0.92780 0.92970 0.90048 0.93196 0.93151 0.77159 0.77215 0.91683 0.94832 0.92941 0.90487 0.91837 0.91890 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.48 37.16 0.35 -1.52 16 2 C 0.16 1.93 2.25 -67.93 -0.15 1.77 16 3 H 0.09 1.33 5.43 -51.93 -0.28 1.05 16 4 C -0.12 -1.10 3.97 -26.73 -0.11 -1.20 16 5 C -0.07 -0.69 0.80 -154.51 -0.12 -0.81 16 6 C -0.15 -1.68 8.00 37.16 0.30 -1.38 16 7 C -0.14 -1.24 8.47 37.16 0.31 -0.93 16 8 C -0.16 -1.88 7.02 37.16 0.26 -1.62 16 9 N -0.75 -10.32 2.78 -58.68 -0.16 -10.49 16 10 C 0.70 13.06 8.03 -86.92 -0.70 12.36 16 11 O -0.60 -13.68 16.01 5.29 0.08 -13.59 16 12 N -0.72 -13.95 5.45 -65.22 -0.36 -14.31 16 13 C 0.18 4.16 5.50 -4.04 -0.02 4.14 16 14 C 0.02 0.51 1.55 -155.66 -0.24 0.27 16 15 C -0.49 -12.70 8.66 -34.44 -0.30 -13.00 16 16 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 17 C 0.07 1.94 5.41 -17.82 -0.10 1.84 16 18 N -0.88 -24.36 12.27 55.43 0.68 -23.68 16 19 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 C -0.21 -4.45 9.96 -26.73 -0.27 -4.72 16 24 C -0.14 -3.17 8.94 -26.73 -0.24 -3.41 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.91 6.21 -51.93 -0.32 0.58 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 1.16 5.24 -51.93 -0.27 0.89 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.52 7.81 -51.93 -0.41 0.11 16 39 H 0.39 4.63 7.03 -40.82 -0.29 4.34 16 40 H 0.39 6.94 8.39 -40.82 -0.34 6.60 16 41 H 0.06 1.70 8.14 -51.93 -0.42 1.28 16 42 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 43 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 44 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 47 H 0.09 2.20 7.92 -51.93 -0.41 1.79 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -29.26 369.78 -8.85 -38.11 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -8.63 Total: 10.94 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -1.02 Total: -8.20 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.16 Total: -48.47 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.08 Total: -13.59 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.26 -8.85 -38.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454882736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.389 kcal (2) G-P(sol) polarization free energy of solvation -29.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds