Wall clock time and date at job start Tue Mar 31 2020 05:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46900 * 109.47101 * 2 1 4 4 C 1.46843 * 111.00056 * 51.81900 * 3 2 1 5 5 C 1.53032 * 109.52510 * 185.84137 * 4 3 2 6 6 C 1.53124 * 109.27810 * 300.81704 * 5 4 3 7 7 C 1.53121 * 109.15870 * 57.65361 * 6 5 4 8 8 C 1.46849 * 111.00000 * 176.02532 * 3 2 1 9 9 H 1.08995 * 109.46231 * 294.17645 * 8 3 2 10 10 C 1.50701 * 109.46136 * 54.15737 * 8 3 2 11 11 O 1.21281 * 120.00096 * 34.02500 * 10 8 3 12 12 N 1.34783 * 119.99894 * 214.02654 * 10 8 3 13 13 C 1.46494 * 119.99969 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.47264 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.46917 * 300.00213 * 14 13 12 16 16 C 1.53001 * 109.46863 * 59.99735 * 14 13 12 17 17 C 1.50692 * 109.47051 * 179.97438 * 14 13 12 18 18 H 1.08003 * 120.00449 * 359.97438 * 17 14 13 19 19 C 1.37881 * 119.99842 * 180.02562 * 17 14 13 20 20 N 1.31520 * 120.00117 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 120.00066 * 179.97438 * 19 17 14 22 22 H 1.48494 * 109.47176 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47204 * 119.99726 * 21 19 17 24 24 H 1.48495 * 109.47209 * 239.99234 * 21 19 17 25 25 H 1.09001 * 109.47255 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46876 * 60.00636 * 1 2 3 27 27 H 1.08997 * 109.47418 * 300.00322 * 1 2 3 28 28 H 1.09001 * 109.47286 * 119.99713 * 2 1 3 29 29 H 1.08997 * 109.47418 * 239.99678 * 2 1 3 30 30 H 1.09010 * 109.45990 * 305.85249 * 4 3 2 31 31 H 1.08994 * 109.46768 * 65.82244 * 4 3 2 32 32 H 1.09002 * 109.50969 * 180.87568 * 5 4 3 33 33 H 1.09005 * 109.53906 * 60.77668 * 5 4 3 34 34 H 1.08992 * 109.52417 * 297.75059 * 6 5 4 35 35 H 1.09001 * 109.57411 * 177.58539 * 6 5 4 36 36 H 1.09000 * 109.50136 * 182.40542 * 7 6 5 37 37 H 1.09003 * 109.53884 * 62.30493 * 7 6 5 38 38 H 0.97001 * 119.99764 * 359.97438 * 12 10 8 39 39 H 1.09005 * 109.46978 * 300.00065 * 13 12 10 40 40 H 1.09001 * 109.47645 * 59.99647 * 13 12 10 41 41 H 1.08995 * 109.47411 * 59.99624 * 15 14 13 42 42 H 1.09002 * 109.47114 * 179.97438 * 15 14 13 43 43 H 1.09001 * 109.46626 * 299.99363 * 15 14 13 44 44 H 1.09005 * 109.46930 * 60.00058 * 16 14 13 45 45 H 1.08999 * 109.47016 * 179.97438 * 16 14 13 46 46 H 1.08995 * 109.47190 * 300.00207 * 16 14 13 47 47 H 0.96996 * 119.99877 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.3961 2.1636 1.0776 5 6 1.8163 3.6302 0.9580 6 6 3.3417 3.7281 1.0492 7 6 3.9671 2.8699 -0.0539 8 6 3.4845 1.4253 0.0950 9 1 3.7964 1.0363 1.0643 10 6 4.0821 0.5809 -1.0009 11 8 3.5338 0.5117 -2.0804 12 7 5.2260 -0.0973 -0.7812 13 6 5.8067 -0.9185 -1.8464 14 6 7.0927 -1.5752 -1.3404 15 6 8.0915 -0.4912 -0.9301 16 6 6.7733 -2.4580 -0.1323 17 6 7.6897 -2.4204 -2.4359 18 1 7.2006 -2.4834 -3.3968 19 6 8.8598 -3.1143 -2.2112 20 7 9.4552 -3.0381 -1.0410 21 14 9.5994 -4.1626 -3.5689 22 1 8.7432 -4.0810 -4.7794 23 1 10.9615 -3.6664 -3.8911 24 1 9.6814 -5.5742 -3.1153 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 0.3114 2.0890 0.9987 31 1 1.7177 1.7712 2.0422 32 1 1.3658 4.2051 1.7671 33 1 1.4828 4.0280 -0.0005 34 1 3.6723 3.3672 2.0230 35 1 3.6493 4.7660 0.9216 36 1 5.0533 2.9014 0.0322 37 1 3.6681 3.2547 -1.0289 38 1 5.6647 -0.0416 0.0821 39 1 5.0949 -1.6904 -2.1390 40 1 6.0346 -0.2895 -2.7069 41 1 7.6595 0.1198 -0.1377 42 1 9.0075 -0.9590 -0.5693 43 1 8.3190 0.1377 -1.7909 44 1 6.0617 -3.2302 -0.4246 45 1 7.6894 -2.9262 0.2278 46 1 6.3413 -1.8470 0.6601 47 1 10.2785 -3.5259 -0.8831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457992176.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:29 Heat of formation + Delta-G solvation = -49.110934 kcal Electronic energy + Delta-G solvation = -23654.628791 eV Core-core repulsion = 20450.665066 eV Total energy + Delta-G solvation = -3203.963725 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.18307 -38.08659 -36.23038 -34.44087 -33.22665 -31.54239 -30.57124 -29.69045 -25.96754 -25.73765 -25.23991 -24.61250 -23.41243 -21.36267 -20.33919 -19.60103 -18.75447 -17.19155 -16.15685 -15.73415 -15.21983 -14.93168 -14.86196 -14.62437 -14.36966 -13.92182 -13.62393 -13.41956 -13.32298 -12.90859 -12.72579 -12.45098 -12.18125 -11.81257 -11.73983 -11.42876 -11.39033 -11.23902 -11.18892 -10.92960 -10.87224 -10.66997 -10.66497 -10.38886 -10.37481 -10.20337 -9.64051 -9.45467 -9.11755 -8.77814 -8.45044 -8.32564 -8.26135 -6.02766 -4.12655 3.03358 3.26821 3.35463 3.39835 3.52158 4.00176 4.39992 4.68062 4.74334 4.81461 5.03625 5.12055 5.14295 5.24135 5.25269 5.29429 5.40148 5.45578 5.52725 5.58741 5.76733 5.79475 5.84169 5.97256 6.02762 6.12520 6.13325 6.23117 6.27692 6.33129 6.50275 6.78212 6.81432 6.90447 6.99334 7.01055 7.05277 7.07585 7.35202 7.54740 7.69039 8.00009 8.07377 8.17097 8.38349 8.75580 8.88681 9.53276 10.98666 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028690 B = 0.003831 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.717048 B = 7307.811011 C = 7733.083391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 N -0.514 5.514 4 C 0.050 3.950 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.106 4.106 8 C 0.072 3.928 9 H 0.054 0.946 10 C 0.508 3.492 11 O -0.533 6.533 12 N -0.718 5.718 13 C 0.133 3.867 14 C 0.055 3.945 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.505 4.505 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.285 1.285 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.028 0.972 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.031 0.969 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.396 0.604 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.006 0.994 42 H 0.085 0.915 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.005 0.995 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.701 10.399 7.898 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 N -0.240 5.240 4 C -0.077 4.077 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.144 4.144 8 C -0.040 4.040 9 H 0.071 0.929 10 C 0.292 3.708 11 O -0.410 6.410 12 N -0.369 5.369 13 C 0.011 3.989 14 C 0.055 3.945 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.231 0.769 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.025 0.975 42 H 0.104 0.896 43 H 0.046 0.954 44 H 0.045 0.955 45 H 0.104 0.896 46 H 0.024 0.976 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.055 10.460 6.742 18.037 hybrid contribution 0.974 -1.017 0.527 1.504 sum -12.081 9.443 7.269 16.969 Atomic orbital electron populations 1.21855 0.94884 1.01737 1.02157 1.22206 0.95946 0.88705 1.01518 1.61742 1.03807 1.12694 1.45799 1.22222 0.99870 0.93773 0.91856 1.21610 0.95842 0.95673 1.02443 1.21576 0.95594 0.99975 0.98507 1.21518 1.00098 0.92225 1.00582 1.21616 0.88999 0.96834 0.96588 0.92861 1.20308 0.81266 0.80159 0.89079 1.90665 1.61132 1.63499 1.25686 1.46381 1.24743 1.48050 1.17738 1.21695 0.96059 0.92526 0.88642 1.18363 0.89023 0.92618 0.94540 1.21818 1.02571 0.96984 0.97382 1.21822 1.01658 0.98637 0.96635 1.21027 1.07778 1.27408 0.98109 0.92393 1.24882 0.96693 0.96407 0.95546 1.69814 1.18528 1.42440 1.21698 0.86521 0.79046 0.80073 0.82289 1.19743 1.21053 1.21077 0.92249 0.91666 0.92748 0.95358 0.89343 0.89878 0.95114 0.91612 0.90906 0.92132 0.91403 0.90928 0.90235 0.76909 0.92840 0.92760 0.97543 0.89632 0.95432 0.95498 0.89606 0.97611 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.41 37.16 0.35 -1.24 16 2 C 0.04 0.58 5.32 -3.83 -0.02 0.56 16 3 N -0.51 -6.87 4.38 -228.09 -1.00 -7.87 16 4 C 0.05 0.52 5.03 -3.84 -0.02 0.50 16 5 C -0.12 -1.08 6.09 -26.65 -0.16 -1.24 16 6 C -0.12 -1.12 6.00 -26.60 -0.16 -1.28 16 7 C -0.11 -1.28 5.35 -26.65 -0.14 -1.42 16 8 C 0.07 0.99 2.22 -68.87 -0.15 0.84 16 9 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 10 C 0.51 8.95 5.81 -10.98 -0.06 8.89 16 11 O -0.53 -11.35 15.53 5.56 0.09 -11.26 16 12 N -0.72 -12.88 4.96 -60.29 -0.30 -13.18 16 13 C 0.13 2.85 4.50 -4.04 -0.02 2.83 16 14 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 15 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 16 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 17 C -0.50 -13.22 8.01 -34.44 -0.28 -13.50 16 18 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 19 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 20 N -0.89 -23.55 9.35 55.43 0.52 -23.03 16 21 Si 0.89 20.73 29.54 -169.99 -5.02 15.70 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.49 6.19 -51.93 -0.32 0.17 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 1.45 6.30 -51.93 -0.33 1.13 16 30 H 0.08 0.77 5.84 -51.92 -0.30 0.47 16 31 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.40 6.47 6.15 -40.82 -0.25 6.22 16 39 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 42 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 46 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 47 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 353.14 15.07 5.32 5.32 Total: -1.00 -28.32 353.14 -9.06 -37.38 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -8.43 Total: 4.39 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -0.24 Total: -7.45 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: -0.78 Total: -44.08 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.32 -9.06 -37.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992176.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.732 kcal (2) G-P(sol) polarization free energy of solvation -28.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds