Wall clock time and date at job start Tue Mar 31 2020 05:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 2 7 7 C 1.52995 * 117.50322 * 243.62346 * 6 5 4 8 8 C 1.52999 * 60.00223 * 252.50829 * 7 6 5 9 9 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 10 10 C 1.34777 * 119.99688 * 274.99602 * 9 2 1 11 11 O 1.21587 * 120.00115 * 0.02562 * 10 9 2 12 12 N 1.34768 * 119.99883 * 180.02562 * 10 9 2 13 13 C 1.46503 * 120.00260 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47386 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47357 * 299.99558 * 14 13 12 16 16 C 1.53005 * 109.47146 * 59.99543 * 14 13 12 17 17 C 1.50700 * 109.47065 * 179.97438 * 14 13 12 18 18 H 1.07998 * 120.00297 * 359.97438 * 17 14 13 19 19 C 1.37885 * 119.99950 * 180.02562 * 17 14 13 20 20 N 1.31515 * 119.99773 * 359.97438 * 19 17 14 21 21 Si 1.86794 * 120.00024 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.46969 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47156 * 119.99598 * 21 19 17 24 24 H 1.48503 * 109.47360 * 240.00059 * 21 19 17 25 25 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 26 26 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 28 28 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 29 29 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 30 30 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 31 31 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 32 32 H 1.09005 * 115.54879 * 29.32806 * 6 5 4 33 33 H 1.09004 * 117.49787 * 359.97438 * 7 6 5 34 34 H 1.09002 * 117.50423 * 145.01738 * 7 6 5 35 35 H 1.09000 * 117.49408 * 252.50795 * 8 7 6 36 36 H 1.09001 * 117.50131 * 107.48609 * 8 7 6 37 37 H 0.96993 * 119.99992 * 94.99462 * 9 2 1 38 38 H 0.97003 * 120.00342 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.46814 * 299.99456 * 13 12 10 40 40 H 1.08996 * 109.47104 * 59.99412 * 13 12 10 41 41 H 1.09000 * 109.46836 * 59.99825 * 15 14 13 42 42 H 1.09001 * 109.47303 * 179.97438 * 15 14 13 43 43 H 1.08996 * 109.47092 * 300.00320 * 15 14 13 44 44 H 1.09010 * 109.46909 * 60.00223 * 16 14 13 45 45 H 1.08996 * 109.47382 * 179.97438 * 16 14 13 46 46 H 1.09000 * 109.47123 * 300.00221 * 16 14 13 47 47 H 0.97005 * 119.99507 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 6 4.0747 -1.3340 -2.5633 7 6 4.9763 -2.5528 -2.3575 8 6 5.5702 -1.2401 -2.8722 9 7 2.0184 -0.6907 1.1962 10 6 2.1471 -0.0184 2.3571 11 8 1.8576 1.1612 2.4119 12 7 2.5968 -0.6536 3.4574 13 6 2.7363 0.0770 4.7195 14 6 3.2608 -0.8693 5.8013 15 6 2.2769 -2.0260 5.9879 16 6 4.6235 -1.4219 5.3786 17 6 3.4048 -0.1175 7.0995 18 1 3.1484 0.9304 7.1480 19 6 3.8650 -0.7674 8.2251 20 7 4.1778 -2.0435 8.1659 21 14 4.0429 0.1642 9.8344 22 1 3.6280 1.5764 9.6372 23 1 3.1827 -0.4652 10.8684 24 1 5.4599 0.1223 10.2767 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7515 -1.7715 -1.2057 29 1 1.6053 -0.2617 -2.1370 30 1 3.8531 0.4369 -1.3574 31 1 3.9994 -1.0728 -0.4261 32 1 3.3865 -1.3537 -3.4084 33 1 5.2066 -2.8410 -1.3318 34 1 4.8814 -3.3747 -3.0671 35 1 5.8660 -1.1984 -3.9205 36 1 6.1909 -0.6648 -2.1852 37 1 2.2490 -1.6319 1.1525 38 1 2.8275 -1.5948 3.4138 39 1 3.4370 0.9013 4.5866 40 1 1.7655 0.4703 5.0208 41 1 2.1731 -2.5697 5.0488 42 1 2.6508 -2.7004 6.7583 43 1 1.3062 -1.6324 6.2890 44 1 5.3245 -0.5978 5.2458 45 1 4.9974 -2.0957 6.1495 46 1 4.5197 -1.9655 4.4396 47 1 4.5012 -2.5007 8.9580 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458641748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:50 Heat of formation + Delta-G solvation = -33.901148 kcal Electronic energy + Delta-G solvation = -22695.347968 eV Core-core repulsion = 19492.043789 eV Total energy + Delta-G solvation = -3203.304179 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.72968 -38.06078 -36.70727 -35.60558 -33.24271 -31.89899 -30.65339 -29.51177 -25.69584 -25.56545 -24.91768 -24.28673 -22.59972 -21.25936 -20.59367 -20.36376 -18.73781 -18.07955 -16.20121 -15.87198 -15.77042 -15.01345 -14.81266 -14.53845 -14.36497 -13.87210 -13.69219 -13.37367 -13.09703 -12.84377 -12.59029 -12.19263 -12.09998 -11.88860 -11.74599 -11.50777 -11.36416 -11.28379 -11.17808 -10.90457 -10.83650 -10.63620 -10.36107 -10.33586 -10.18515 -10.07212 -9.69230 -9.60048 -9.27215 -8.89437 -8.75369 -8.39324 -8.13579 -6.00177 -4.09795 3.17948 3.28641 3.37238 3.42676 3.56234 3.72142 4.30915 4.40870 4.67463 4.70067 4.77042 4.83355 5.00034 5.07813 5.26691 5.26884 5.41254 5.43297 5.53361 5.61184 5.71535 5.72368 5.82801 5.86669 5.90039 6.07909 6.17318 6.26151 6.27614 6.40661 6.54255 6.79876 6.84274 6.85793 6.95160 7.06357 7.15448 7.36268 7.48079 7.58792 7.72366 8.03947 8.15514 8.41365 8.56308 8.90617 9.12998 9.55906 11.01268 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022065 B = 0.003320 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.669565 B = 8431.000452 C = 9158.070602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.161 3.839 3 H 0.086 0.914 4 C -0.122 4.122 5 C -0.090 4.090 6 C -0.152 4.152 7 C -0.182 4.182 8 C -0.184 4.184 9 N -0.748 5.748 10 C 0.698 3.302 11 O -0.601 6.601 12 N -0.734 5.734 13 C 0.151 3.849 14 C 0.056 3.944 15 C -0.129 4.129 16 C -0.129 4.129 17 C -0.504 4.504 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.391 0.609 38 H 0.392 0.608 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.005 0.995 42 H 0.084 0.916 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.084 0.916 46 H 0.005 0.995 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 -2.620 -20.005 20.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.055 3.945 3 H 0.104 0.896 4 C -0.160 4.160 5 C -0.128 4.128 6 C -0.170 4.170 7 C -0.219 4.219 8 C -0.221 4.221 9 N -0.405 5.405 10 C 0.397 3.603 11 O -0.480 6.480 12 N -0.389 5.389 13 C 0.028 3.972 14 C 0.055 3.945 15 C -0.187 4.187 16 C -0.187 4.187 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.136 4.136 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.225 0.775 38 H 0.227 0.773 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.024 0.976 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.103 0.897 46 H 0.024 0.976 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.945 -1.644 -19.794 19.957 hybrid contribution 0.345 -0.497 0.826 1.024 sum -1.600 -2.141 -18.968 19.156 Atomic orbital electron populations 1.22202 0.95830 1.01819 1.02380 1.20734 0.93471 0.97306 0.82995 0.89605 1.21874 0.95577 1.01150 0.97375 1.21196 0.95254 1.00449 0.95867 1.22369 0.93004 1.01473 1.00142 1.23043 1.04620 0.91708 1.02508 1.22964 0.96202 1.01136 1.01811 1.45244 1.72720 1.13356 1.09154 1.16096 0.78559 0.85192 0.80419 1.90871 1.57770 1.14600 1.84759 1.45511 1.69620 1.13958 1.09781 1.21552 0.99930 0.94922 0.80798 1.18361 0.92128 0.92138 0.91865 1.21813 0.98177 0.99768 0.98950 1.21812 0.98651 1.00067 0.98140 1.21043 1.43609 0.96286 0.93339 0.92366 1.24884 0.95053 0.94889 0.98744 1.69821 1.44888 1.08886 1.28918 0.86520 0.77623 0.80202 0.83574 1.19738 1.21090 1.21090 0.92104 0.92767 0.91848 0.91372 0.90539 0.91467 0.91388 0.87974 0.88674 0.89099 0.89063 0.88774 0.77540 0.77305 0.93066 0.93072 0.97567 0.89690 0.95484 0.95506 0.89701 0.97576 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.48 37.16 0.35 -1.43 16 2 C 0.16 1.82 2.57 -67.93 -0.17 1.64 16 3 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 4 C -0.12 -1.00 4.71 -26.73 -0.13 -1.13 16 5 C -0.09 -0.81 5.38 -26.74 -0.14 -0.95 16 6 C -0.15 -1.21 5.74 -90.63 -0.52 -1.73 16 7 C -0.18 -1.44 10.18 -26.73 -0.27 -1.72 16 8 C -0.18 -1.48 10.25 -26.73 -0.27 -1.75 16 9 N -0.75 -9.71 4.53 -58.68 -0.27 -9.97 16 10 C 0.70 12.47 8.53 -86.93 -0.74 11.73 16 11 O -0.60 -13.14 16.01 5.29 0.08 -13.05 16 12 N -0.73 -13.35 4.96 -65.23 -0.32 -13.67 16 13 C 0.15 3.29 4.50 -4.04 -0.02 3.27 16 14 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 15 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 16 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 17 C -0.50 -13.34 8.01 -34.44 -0.28 -13.61 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 19 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 20 N -0.89 -23.72 9.35 55.43 0.52 -23.20 16 21 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.68 7.49 -51.93 -0.39 0.29 16 32 H 0.10 0.73 8.08 -51.93 -0.42 0.32 16 33 H 0.09 0.79 8.03 -51.93 -0.42 0.37 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.39 4.14 8.62 -40.82 -0.35 3.79 16 38 H 0.39 6.40 6.18 -40.82 -0.25 6.15 16 39 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 42 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 45 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 46 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 47 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 370.61 15.07 5.58 5.58 Total: -1.00 -29.12 370.61 -9.79 -38.91 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -8.60 Total: 7.64 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -1.76 Total: -8.07 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -0.07 Total: -46.85 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.08 Total: -13.05 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.12 -9.79 -38.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458641748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.007 kcal (2) G-P(sol) polarization free energy of solvation -29.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds