Wall clock time and date at job start Tue Mar 31 2020 05:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 2 7 7 C 1.52995 * 117.50322 * 243.62346 * 6 5 4 8 8 C 1.52999 * 60.00223 * 252.50829 * 7 6 5 9 9 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 10 10 C 1.34777 * 119.99688 * 274.99602 * 9 2 1 11 11 O 1.21587 * 120.00115 * 0.02562 * 10 9 2 12 12 N 1.34768 * 119.99883 * 180.02562 * 10 9 2 13 13 C 1.46503 * 120.00260 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47386 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47357 * 299.99558 * 14 13 12 16 16 C 1.53005 * 109.47146 * 59.99543 * 14 13 12 17 17 C 1.50700 * 109.47065 * 179.97438 * 14 13 12 18 18 H 1.07998 * 120.00297 * 359.97438 * 17 14 13 19 19 C 1.37885 * 119.99950 * 180.02562 * 17 14 13 20 20 N 1.31515 * 119.99773 * 359.97438 * 19 17 14 21 21 Si 1.86794 * 120.00024 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.46969 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47156 * 119.99598 * 21 19 17 24 24 H 1.48503 * 109.47360 * 240.00059 * 21 19 17 25 25 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 26 26 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 28 28 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 29 29 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 30 30 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 31 31 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 32 32 H 1.09005 * 115.54879 * 29.32806 * 6 5 4 33 33 H 1.09004 * 117.49787 * 359.97438 * 7 6 5 34 34 H 1.09002 * 117.50423 * 145.01738 * 7 6 5 35 35 H 1.09000 * 117.49408 * 252.50795 * 8 7 6 36 36 H 1.09001 * 117.50131 * 107.48609 * 8 7 6 37 37 H 0.96993 * 119.99992 * 94.99462 * 9 2 1 38 38 H 0.97003 * 120.00342 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.46814 * 299.99456 * 13 12 10 40 40 H 1.08996 * 109.47104 * 59.99412 * 13 12 10 41 41 H 1.09000 * 109.46836 * 59.99825 * 15 14 13 42 42 H 1.09001 * 109.47303 * 179.97438 * 15 14 13 43 43 H 1.08996 * 109.47092 * 300.00320 * 15 14 13 44 44 H 1.09010 * 109.46909 * 60.00223 * 16 14 13 45 45 H 1.08996 * 109.47382 * 179.97438 * 16 14 13 46 46 H 1.09000 * 109.47123 * 300.00221 * 16 14 13 47 47 H 0.97005 * 119.99507 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 6 4.0747 -1.3340 -2.5633 7 6 4.9763 -2.5528 -2.3575 8 6 5.5702 -1.2401 -2.8722 9 7 2.0184 -0.6907 1.1962 10 6 2.1471 -0.0184 2.3571 11 8 1.8576 1.1612 2.4119 12 7 2.5968 -0.6536 3.4574 13 6 2.7363 0.0770 4.7195 14 6 3.2608 -0.8693 5.8013 15 6 2.2769 -2.0260 5.9879 16 6 4.6235 -1.4219 5.3786 17 6 3.4048 -0.1175 7.0995 18 1 3.1484 0.9304 7.1480 19 6 3.8650 -0.7674 8.2251 20 7 4.1778 -2.0435 8.1659 21 14 4.0429 0.1642 9.8344 22 1 3.6280 1.5764 9.6372 23 1 3.1827 -0.4652 10.8684 24 1 5.4599 0.1223 10.2767 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7515 -1.7715 -1.2057 29 1 1.6053 -0.2617 -2.1370 30 1 3.8531 0.4369 -1.3574 31 1 3.9994 -1.0728 -0.4261 32 1 3.3865 -1.3537 -3.4084 33 1 5.2066 -2.8410 -1.3318 34 1 4.8814 -3.3747 -3.0671 35 1 5.8660 -1.1984 -3.9205 36 1 6.1909 -0.6648 -2.1852 37 1 2.2490 -1.6319 1.1525 38 1 2.8275 -1.5948 3.4138 39 1 3.4370 0.9013 4.5866 40 1 1.7655 0.4703 5.0208 41 1 2.1731 -2.5697 5.0488 42 1 2.6508 -2.7004 6.7583 43 1 1.3062 -1.6324 6.2890 44 1 5.3245 -0.5978 5.2458 45 1 4.9974 -2.0957 6.1495 46 1 4.5197 -1.9655 4.4396 47 1 4.5012 -2.5007 8.9580 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458641748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:50 Heat of formation + Delta-G solvation = -49.865199 kcal Electronic energy + Delta-G solvation = -22696.040221 eV Core-core repulsion = 19492.043789 eV Total energy + Delta-G solvation = -3203.996432 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.11148 -38.90499 -38.20363 -36.81673 -34.97653 -33.25678 -32.15451 -30.47723 -27.55337 -27.43784 -26.62126 -25.20653 -23.20388 -22.45122 -21.55951 -21.22207 -20.55461 -19.52897 -17.77776 -17.32321 -16.68858 -16.50905 -16.38217 -15.70113 -15.51599 -15.14765 -14.75262 -14.71660 -14.46610 -14.40853 -13.98200 -13.67782 -13.19004 -13.09834 -13.01229 -12.69090 -12.61378 -12.56290 -12.37917 -12.27038 -12.20434 -12.13542 -12.00666 -11.67901 -11.47402 -11.31447 -11.10527 -11.00905 -10.71199 -10.68846 -10.39957 -10.22092 -9.61462 -8.02009 -6.17448 1.41547 1.45580 1.55181 1.88561 2.27331 2.46894 2.94676 3.21585 3.46952 3.62339 4.01272 4.04689 4.13197 4.25260 4.36409 4.43523 4.47827 4.54800 4.66148 4.72279 4.80696 4.82718 4.85945 4.92542 4.99710 5.06086 5.07043 5.09715 5.12603 5.18353 5.21155 5.28312 5.30697 5.37269 5.41098 5.51526 5.65689 5.68019 5.68218 5.72855 6.14960 6.16160 6.23139 6.44749 6.87014 7.23310 7.50313 7.71312 8.97113 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022065 B = 0.003320 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.669565 B = 8431.000452 C = 9158.070602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.157 3.843 3 H 0.060 0.940 4 C -0.108 4.108 5 C -0.090 4.090 6 C -0.149 4.149 7 C -0.182 4.182 8 C -0.192 4.192 9 N -0.728 5.728 10 C 0.696 3.304 11 O -0.643 6.643 12 N -0.728 5.728 13 C 0.169 3.831 14 C 0.053 3.947 15 C -0.119 4.119 16 C -0.118 4.118 17 C -0.529 4.529 18 H 0.043 0.957 19 C 0.028 3.972 20 N -0.899 5.899 21 Si 0.945 3.055 22 H -0.276 1.276 23 H -0.281 1.281 24 H -0.281 1.281 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.028 0.972 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.407 0.593 38 H 0.404 0.596 39 H 0.032 0.968 40 H 0.032 0.968 41 H 0.036 0.964 42 H 0.062 0.938 43 H 0.017 0.983 44 H 0.016 0.984 45 H 0.062 0.938 46 H 0.036 0.964 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.103 -3.913 -21.882 22.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.052 3.948 3 H 0.079 0.921 4 C -0.146 4.146 5 C -0.127 4.127 6 C -0.167 4.167 7 C -0.219 4.219 8 C -0.229 4.229 9 N -0.384 5.384 10 C 0.395 3.605 11 O -0.526 6.526 12 N -0.383 5.383 13 C 0.044 3.956 14 C 0.052 3.948 15 C -0.177 4.177 16 C -0.176 4.176 17 C -0.567 4.567 18 H 0.062 0.938 19 C -0.171 4.171 20 N -0.538 5.538 21 Si 0.772 3.228 22 H -0.201 1.201 23 H -0.207 1.207 24 H -0.207 1.207 25 H 0.102 0.898 26 H 0.088 0.912 27 H 0.048 0.952 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.135 0.865 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.102 0.898 37 H 0.243 0.757 38 H 0.241 0.759 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.081 0.919 43 H 0.036 0.964 44 H 0.035 0.965 45 H 0.081 0.919 46 H 0.055 0.945 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.292 -2.990 -21.712 22.037 hybrid contribution 0.456 -0.083 1.357 1.434 sum -1.836 -3.072 -20.355 20.668 Atomic orbital electron populations 1.22154 0.95090 1.02630 1.01843 1.20915 0.94017 0.96444 0.83426 0.92128 1.21800 0.94835 1.01828 0.96118 1.21154 0.95832 0.99709 0.96015 1.22369 0.93131 1.01245 0.99973 1.23093 1.04377 0.91965 1.02497 1.23025 0.96314 1.01307 1.02282 1.45123 1.71313 1.13969 1.08011 1.16243 0.78183 0.84744 0.81286 1.90847 1.59487 1.16699 1.85532 1.45206 1.69975 1.14237 1.08895 1.21076 0.98217 0.94296 0.81971 1.18349 0.92861 0.92382 0.91226 1.21652 0.97153 0.99102 0.99763 1.21647 0.97710 0.99391 0.98845 1.21314 1.44179 0.96037 0.95215 0.93841 1.25448 0.94906 0.95666 1.01117 1.69917 1.44852 1.09494 1.29496 0.85705 0.77603 0.78948 0.80540 1.20076 1.20665 1.20672 0.89822 0.91205 0.95243 0.89652 0.88497 0.92766 0.92632 0.86514 0.89304 0.87917 0.87989 0.89761 0.75669 0.75920 0.94930 0.94918 0.94462 0.91884 0.96417 0.96474 0.91914 0.94483 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 9.48 71.98 0.68 -2.47 16 2 C 0.16 3.30 2.57 44.99 0.12 3.42 16 3 H 0.06 1.62 7.58 -2.39 -0.02 1.60 16 4 C -0.11 -1.46 4.71 30.59 0.14 -1.31 16 5 C -0.09 -1.43 5.38 30.59 0.16 -1.27 16 6 C -0.15 -2.02 5.74 -10.80 -0.06 -2.08 16 7 C -0.18 -2.50 10.18 30.59 0.31 -2.19 16 8 C -0.19 -2.78 10.25 30.59 0.31 -2.46 16 9 N -0.73 -17.76 4.53 -457.81 -2.08 -19.83 16 10 C 0.70 24.57 8.53 179.06 1.53 26.10 16 11 O -0.64 -28.63 16.01 -3.99 -0.06 -28.69 16 12 N -0.73 -25.87 4.96 -478.55 -2.37 -28.24 16 13 C 0.17 7.45 4.50 86.38 0.39 7.84 16 14 C 0.05 2.46 0.50 -52.93 -0.03 2.44 16 15 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 16 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 17 C -0.53 -28.42 8.01 25.60 0.21 -28.21 16 18 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 19 C 0.03 1.51 5.15 84.66 0.44 1.94 16 20 N -0.90 -48.11 9.35 21.45 0.20 -47.91 16 21 Si 0.95 43.00 29.54 68.60 2.03 45.03 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 1.02 7.49 -2.39 -0.02 1.00 16 32 H 0.12 1.27 8.08 -2.38 -0.02 1.25 16 33 H 0.09 1.32 8.03 -2.38 -0.02 1.31 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 35 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.41 7.53 8.62 -92.71 -0.80 6.73 16 38 H 0.40 12.33 6.18 -92.71 -0.57 11.76 16 39 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 42 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 43 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 46 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 47 H 0.26 13.36 8.31 -92.70 -0.77 12.59 16 Total: -1.00 -63.71 370.61 2.64 -61.06 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: -0.43 Total: 26.31 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 5.36 Total: -7.72 kcal Atomic # 7 Polarization: -91.74 SS G_CDS: -4.25 Total: -95.99 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.06 Total: -28.69 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -63.71 2.64 -61.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458641748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.197 kcal (2) G-P(sol) polarization free energy of solvation -63.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds