Wall clock time and date at job start Tue Mar 31 2020 05:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 C 1.53001 * 109.47049 * 185.00237 * 4 2 1 6 6 C 1.53002 * 109.46964 * 180.02562 * 5 4 2 7 7 C 1.53004 * 117.49484 * 243.74556 * 6 5 4 8 8 C 1.52999 * 117.49835 * 175.08740 * 6 5 4 9 9 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 10 10 C 1.34770 * 120.00256 * 84.99846 * 9 2 1 11 11 O 1.21592 * 120.00149 * 359.97438 * 10 9 2 12 12 N 1.34777 * 119.99883 * 180.02562 * 10 9 2 13 13 C 1.46507 * 120.00051 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47438 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46685 * 299.99813 * 14 13 12 16 16 C 1.53003 * 109.47203 * 59.99352 * 14 13 12 17 17 C 1.50699 * 109.47393 * 179.97438 * 14 13 12 18 18 H 1.08003 * 119.99695 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00268 * 179.97438 * 17 14 13 20 20 N 1.31519 * 119.99639 * 0.02562 * 19 17 14 21 21 Si 1.86792 * 120.00236 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47009 * 90.00278 * 21 19 17 23 23 H 1.48498 * 109.47242 * 210.00685 * 21 19 17 24 24 H 1.48505 * 109.46935 * 330.00246 * 21 19 17 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 29 29 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 30 30 H 1.08998 * 109.47250 * 300.00119 * 5 4 2 31 31 H 1.08998 * 109.47252 * 60.00195 * 5 4 2 32 32 H 1.08992 * 115.55236 * 29.41320 * 6 5 4 33 33 H 1.08994 * 117.49854 * 359.97438 * 7 6 5 34 34 H 1.09000 * 117.49523 * 145.02430 * 7 6 5 35 35 H 1.08994 * 117.49800 * 214.97505 * 8 6 5 36 36 H 1.09007 * 117.49686 * 359.97438 * 8 6 5 37 37 H 0.97005 * 119.99374 * 264.99912 * 9 2 1 38 38 H 0.96997 * 120.00470 * 359.97438 * 12 10 9 39 39 H 1.09005 * 109.46503 * 299.99994 * 13 12 10 40 40 H 1.09001 * 109.46970 * 59.98747 * 13 12 10 41 41 H 1.08995 * 109.47467 * 60.00035 * 15 14 13 42 42 H 1.09004 * 109.46886 * 179.97438 * 15 14 13 43 43 H 1.08999 * 109.47337 * 299.99670 * 15 14 13 44 44 H 1.08999 * 109.46469 * 60.00484 * 16 14 13 45 45 H 1.08997 * 109.46991 * 180.02562 * 16 14 13 46 46 H 1.08995 * 109.47315 * 300.00188 * 16 14 13 47 47 H 0.96997 * 119.99716 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 6 4.0749 -1.3351 2.5626 7 6 4.7742 -0.4911 3.6302 8 6 5.5899 -1.4401 2.7486 9 7 2.0184 -0.6905 -1.1962 10 6 2.1471 -0.0181 -2.3571 11 8 1.8575 1.1616 -2.4118 12 7 2.5959 -0.6535 -3.4577 13 6 2.7364 0.0776 -4.7195 14 6 3.2607 -0.8686 -5.8015 15 6 4.6229 -1.4221 -5.3784 16 6 2.2763 -2.0248 -5.9887 17 6 3.4046 -0.1167 -7.0996 18 1 3.1481 0.9313 -7.1479 19 6 3.8646 -0.7665 -8.2253 20 7 4.1774 -2.0426 -8.1663 21 14 4.0436 0.1656 -9.8342 22 1 5.4059 0.7506 -9.9183 23 1 3.8335 -0.7655 -10.9717 24 1 3.0336 1.2528 -9.8914 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6054 -0.2618 2.1369 29 1 1.7517 -1.7715 1.2055 30 1 3.9995 -1.0727 0.4259 31 1 3.8532 0.4370 1.3574 32 1 3.4668 -2.1734 2.9023 33 1 4.8713 0.5782 3.4425 34 1 4.6265 -0.7746 4.6722 35 1 5.9785 -2.3474 3.2111 36 1 6.2233 -0.9953 1.9809 37 1 2.2491 -1.6317 -1.1527 38 1 2.8267 -1.5946 -3.4143 39 1 1.7660 0.4723 -5.0206 40 1 3.4380 0.9010 -4.5862 41 1 4.5185 -1.9660 -4.4397 42 1 4.9963 -2.0965 -6.1491 43 1 5.3243 -0.5985 -5.2451 44 1 1.3058 -1.6304 -6.2901 45 1 2.6500 -2.6990 -6.7592 46 1 2.1718 -2.5687 -5.0500 47 1 4.5013 -2.4996 -8.9582 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458641749.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:52 Heat of formation + Delta-G solvation = -33.858842 kcal Electronic energy + Delta-G solvation = -22634.058166 eV Core-core repulsion = 19430.755822 eV Total energy + Delta-G solvation = -3203.302345 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.72699 -38.06298 -36.70900 -35.60739 -33.23991 -31.89036 -30.65043 -29.51849 -25.69260 -25.56203 -24.91267 -24.29280 -22.61177 -21.25845 -20.63399 -20.33556 -18.73486 -18.07271 -16.23639 -15.85283 -15.75221 -14.93557 -14.82822 -14.56846 -14.38230 -14.01568 -13.58532 -13.39985 -13.06981 -12.83998 -12.59289 -12.19456 -12.09797 -11.85049 -11.74633 -11.51893 -11.40148 -11.28906 -11.16820 -10.89910 -10.82253 -10.66877 -10.35558 -10.33956 -10.18255 -10.08381 -9.69176 -9.59610 -9.26952 -8.89077 -8.76010 -8.38685 -8.13314 -5.99812 -4.09546 3.18049 3.30019 3.36884 3.41630 3.55476 3.72226 4.29724 4.40967 4.66649 4.69317 4.76521 4.86118 4.94580 5.09922 5.26989 5.29303 5.39343 5.41104 5.53262 5.59871 5.69673 5.71543 5.81842 5.86729 5.93764 6.05654 6.16789 6.26205 6.27735 6.40858 6.54568 6.79973 6.84512 6.86178 6.95455 7.06674 7.15693 7.36542 7.48252 7.59130 7.72467 8.04257 8.15743 8.41608 8.56542 8.90601 9.13155 9.56105 11.01639 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023552 B = 0.003197 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.579231 B = 8756.842297 C = 9392.756646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.161 3.839 3 H 0.086 0.914 4 C -0.122 4.122 5 C -0.090 4.090 6 C -0.151 4.151 7 C -0.183 4.183 8 C -0.183 4.183 9 N -0.748 5.748 10 C 0.698 3.302 11 O -0.601 6.601 12 N -0.734 5.734 13 C 0.151 3.849 14 C 0.056 3.944 15 C -0.129 4.129 16 C -0.130 4.130 17 C -0.505 4.505 18 H 0.057 0.943 19 C 0.066 3.934 20 N -0.887 5.887 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.392 0.608 38 H 0.393 0.607 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.005 0.995 42 H 0.084 0.916 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.084 0.916 46 H 0.005 0.995 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.788 -2.221 20.256 20.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.055 3.945 3 H 0.104 0.896 4 C -0.160 4.160 5 C -0.128 4.128 6 C -0.169 4.169 7 C -0.220 4.220 8 C -0.220 4.220 9 N -0.405 5.405 10 C 0.397 3.603 11 O -0.480 6.480 12 N -0.389 5.389 13 C 0.028 3.972 14 C 0.056 3.944 15 C -0.187 4.187 16 C -0.187 4.187 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.225 0.775 38 H 0.227 0.773 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.024 0.976 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.103 0.897 46 H 0.024 0.976 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.985 -1.250 20.043 20.180 hybrid contribution 0.352 -0.468 -0.815 1.004 sum -1.633 -1.719 19.228 19.374 Atomic orbital electron populations 1.22202 0.95825 1.01819 1.02383 1.20732 0.93473 0.97308 0.82990 0.89635 1.21873 0.95611 1.01089 0.97397 1.21196 0.95223 1.00209 0.96122 1.22373 0.94761 1.01772 0.98018 1.23046 1.05074 0.97672 0.96218 1.22981 0.94096 1.01685 1.03282 1.45243 1.72711 1.13370 1.09150 1.16097 0.78557 0.85188 0.80418 1.90872 1.57772 1.14608 1.84769 1.45512 1.69642 1.13947 1.09768 1.21554 0.99919 0.94914 0.80814 1.18354 0.92121 0.92132 0.91836 1.21813 0.98657 1.00068 0.98159 1.21816 0.98184 0.99772 0.98961 1.21001 1.43730 0.96245 0.93355 0.92429 1.24878 0.95058 0.94878 0.98727 1.69809 1.44792 1.08877 1.29061 0.86573 0.78478 0.79705 0.83131 1.20731 1.21297 1.19899 0.92764 0.92102 0.91847 0.90466 0.91443 0.91169 0.91690 0.87929 0.88824 0.89121 0.88996 0.88734 0.77517 0.77292 0.93067 0.93082 0.97561 0.89695 0.95503 0.95477 0.89686 0.97558 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.48 37.16 0.35 -1.43 16 2 C 0.16 1.82 2.57 -67.93 -0.17 1.64 16 3 H 0.09 1.16 7.58 -51.93 -0.39 0.76 16 4 C -0.12 -1.00 4.71 -26.73 -0.13 -1.13 16 5 C -0.09 -0.80 5.38 -26.73 -0.14 -0.95 16 6 C -0.15 -1.21 5.73 -90.62 -0.52 -1.73 16 7 C -0.18 -1.40 10.18 -26.69 -0.27 -1.67 16 8 C -0.18 -1.48 10.25 -26.69 -0.27 -1.75 16 9 N -0.75 -9.70 4.53 -58.67 -0.27 -9.96 16 10 C 0.70 12.48 8.53 -86.92 -0.74 11.74 16 11 O -0.60 -13.14 16.01 5.29 0.08 -13.06 16 12 N -0.73 -13.36 4.96 -65.22 -0.32 -13.68 16 13 C 0.15 3.29 4.50 -4.04 -0.02 3.28 16 14 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 15 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 16 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 17 C -0.50 -13.36 8.01 -34.44 -0.28 -13.64 16 18 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 19 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 20 N -0.89 -23.76 9.35 55.43 0.52 -23.24 16 21 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.70 7.75 -51.93 -0.40 0.30 16 31 H 0.06 0.64 7.88 -51.93 -0.41 0.23 16 32 H 0.10 0.75 8.07 -51.93 -0.42 0.33 16 33 H 0.09 0.72 8.03 -51.93 -0.42 0.30 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.39 4.13 8.62 -40.82 -0.35 3.77 16 38 H 0.39 6.41 6.18 -40.82 -0.25 6.16 16 39 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 42 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 46 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 47 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 370.61 15.07 5.59 5.59 Total: -1.00 -29.14 370.61 -9.79 -38.92 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -8.60 Total: 7.61 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -1.76 Total: -8.03 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.07 Total: -46.88 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.08 Total: -13.06 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.14 -9.79 -38.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458641749.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.065 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds